RNA–Protein interactions for RNA: ENST00000373006.5

USP49-201, Transcript of ubiquitin specific peptidase 49, humanhuman

TSL 1 (best) BASIC

Gene USP49, Length 3,177 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP49-201ENST00000373006 DUSP4Q13115 394 aa13.21□□□□□ -0.3
USP49-201ENST00000373006 CDK10Q15131 360 aa13.21□□□□□ -0.3
USP49-201ENST00000373006 CACTIN-AS1Q8N1I8 211 aa13.21□□□□□ -0.3
USP49-201ENST00000373006 GPR151Q8TDV0 419 aa13.21□□□□□ -0.3
USP49-201ENST00000373006 POP5Q969H6 163 aaKnown RBP13.21□□□□□ -0.3
USP49-201ENST00000373006 PHOX2BQ99453 314 aa13.21□□□□□ -0.3
USP49-201ENST00000373006 MTERF1Q99551 399 aaKnown RBP13.21□□□□□ -0.3
USP49-201ENST00000373006 COPS8Q99627 209 aa13.21□□□□□ -0.3
USP49-201ENST00000373006 EPYCQ99645 322 aa13.21□□□□□ -0.3
USP49-201ENST00000373006 ATG10Q9H0Y0 220 aa13.21□□□□□ -0.3
USP49-201ENST00000373006 SLC22A14Q9Y267 594 aa13.21□□□□□ -0.3
USP49-201ENST00000373006 A8MUA0 341 aa13.2□□□□□ -0.3
USP49-201ENST00000373006 PRAMEF4O60810 478 aa13.2□□□□□ -0.3
USP49-201ENST00000373006 SCN2BO60939 215 aa13.2□□□□□ -0.3
USP49-201ENST00000373006 GPX5O75715 221 aa13.2□□□□□ -0.3
USP49-201ENST00000373006 KLKB1P03952 638 aa13.2□□□□□ -0.3
USP49-201ENST00000373006 RFX2P48378 723 aa13.2□□□□□ -0.3
USP49-201ENST00000373006 HSPA14Q0VDF9 509 aa13.2□□□□□ -0.3
USP49-201ENST00000373006 GPR50Q13585 617 aa13.2□□□□□ -0.3
USP49-201ENST00000373006 PRAMEF9Q5VWM5 478 aa13.2□□□□□ -0.3
USP49-201ENST00000373006 NCEH1Q6PIU2 408 aa13.2□□□□□ -0.3
USP49-201ENST00000373006 CHCHD4Q8N4Q1 142 aa13.2□□□□□ -0.3
USP49-201ENST00000373006 OR5H6Q8NGV6 325 aa13.2□□□□□ -0.3
USP49-201ENST00000373006 PIK3R3Q92569 461 aa13.2□□□□□ -0.3
USP49-201ENST00000373006 UROC1Q96N76 676 aa13.2□□□□□ -0.3
USP49-201ENST00000373006 FYTTD1Q96QD9 318 aaKnown RBP13.2□□□□□ -0.3
USP49-201ENST00000373006 SNX18Q96RF0 628 aa13.2□□□□□ -0.3
USP49-201ENST00000373006 SLC29A3Q9BZD2 475 aa13.2□□□□□ -0.3
USP49-201ENST00000373006 RERGLQ9H628 205 aa13.2□□□□□ -0.3
USP49-201ENST00000373006 NDUFAF4Q9P032 175 aa13.2□□□□□ -0.3
USP49-201ENST00000373006 CFAP20Q9Y6A4 193 aaKnown RBP13.2□□□□□ -0.3
USP49-201ENST00000373006 J3KTA2 159 aa13.2□□□□□ -0.3
USP49-201ENST00000373006 ARHGAP33O14559 1287 aa13.2□□□□□ -0.3
USP49-201ENST00000373006 SCO2O43819 266 aa13.2□□□□□ -0.3
USP49-201ENST00000373006 SNX4O95219 450 aa13.2□□□□□ -0.3
USP49-201ENST00000373006 POU1F1P28069 291 aa13.2□□□□□ -0.3
USP49-201ENST00000373006 RPS19P39019 145 aaKnown RBP13.2□□□□□ -0.3
USP49-201ENST00000373006 RHOAP61586 193 aa13.2□□□□□ -0.3
USP49-201ENST00000373006 GPLD1P80108 840 aa13.2□□□□□ -0.3
USP49-201ENST00000373006 SPIBQ01892 262 aa13.2□□□□□ -0.3
USP49-201ENST00000373006 CHRNA6Q15825 494 aa13.2□□□□□ -0.3
USP49-201ENST00000373006 PTCHD3Q3KNS1 767 aa13.2□□□□□ -0.3
USP49-201ENST00000373006 TTC23LQ6PF05 361 aa13.2□□□□□ -0.3
USP49-201ENST00000373006 TRIM48Q8IWZ4 208 aa13.2□□□□□ -0.3
USP49-201ENST00000373006 NAGSQ8N159 534 aa13.2□□□□□ -0.3
USP49-201ENST00000373006 FLCNQ8NFG4 579 aa13.2□□□□□ -0.3
USP49-201ENST00000373006 CHAC2Q8WUX2 184 aa13.2□□□□□ -0.3
USP49-201ENST00000373006 NACC2Q96BF6 587 aa13.2□□□□□ -0.3
USP49-201ENST00000373006 MCCC1Q96RQ3 725 aaPredicted RBP13.2□□□□□ -0.3
USP49-201ENST00000373006 ZFYVE1Q9HBF4 777 aa13.2□□□□□ -0.3
USP49-201ENST00000373006 FKBP14Q9NWM8 211 aa13.2□□□□□ -0.3
USP49-201ENST00000373006 PCDHGA2Q9Y5H1 932 aa13.2□□□□□ -0.3
USP49-201ENST00000373006 EFCAB10A6NFE3 127 aa13.2□□□□□ -0.3
USP49-201ENST00000373006 TMEM229AB2RXF0 380 aa13.2□□□□□ -0.3
USP49-201ENST00000373006 PCDH7O60245 1069 aa13.2□□□□□ -0.3
USP49-201ENST00000373006 SLC11A2P49281 568 aa13.2□□□□□ -0.3
USP49-201ENST00000373006 LIMK1P53667 647 aa13.2□□□□□ -0.3
USP49-201ENST00000373006 DSC3Q14574 896 aa13.2□□□□□ -0.3
USP49-201ENST00000373006 TAF1CQ15572 869 aaPredicted RBP13.2□□□□□ -0.3
USP49-201ENST00000373006 EXOC3L2Q2M3D2 409 aa13.2□□□□□ -0.3
USP49-201ENST00000373006 FBXO43Q4G163 708 aa13.2□□□□□ -0.3
USP49-201ENST00000373006 ARMC12Q5T9G4 340 aa13.2□□□□□ -0.3
USP49-201ENST00000373006 ERAP2Q6P179 960 aa13.2□□□□□ -0.3
USP49-201ENST00000373006 ERICH5Q6P6B1 374 aa13.2□□□□□ -0.3
USP49-201ENST00000373006 RAB43Q86YS6 212 aa13.2□□□□□ -0.3
USP49-201ENST00000373006 WDR36Q8NI36 951 aaKnown RBP13.2□□□□□ -0.3
USP49-201ENST00000373006 CMTM7Q96FZ5 175 aa13.2□□□□□ -0.3
USP49-201ENST00000373006 NMRK2Q9NPI5 230 aa13.2□□□□□ -0.3
USP49-201ENST00000373006 CFL2Q9Y281 166 aa13.2□□□□□ -0.3
USP49-201ENST00000373006 PIKFYVEQ9Y2I7 2098 aa13.19□□□□□ -0.3
USP49-201ENST00000373006 TDRD15B5MCY1 1934 aaKnown RBP13.19□□□□□ -0.3
USP49-201ENST00000373006 MEIOCA2RUB1 952 aa13.19□□□□□ -0.3
USP49-201ENST00000373006 CENPBD1B2RD01 187 aa13.19□□□□□ -0.3
USP49-201ENST00000373006 E9PQ18 207 aa13.19□□□□□ -0.3
USP49-201ENST00000373006 CAPN5O15484 640 aaPredicted RBP13.19□□□□□ -0.3
USP49-201ENST00000373006 CLDN11O75508 207 aa13.19□□□□□ -0.3
USP49-201ENST00000373006 SLITRK5O94991 958 aa13.19□□□□□ -0.3
USP49-201ENST00000373006 CKMT1AP12532 417 aa13.19□□□□□ -0.3
USP49-201ENST00000373006 HLA-EP13747 358 aa13.19□□□□□ -0.3
USP49-201ENST00000373006 PRPS1L1P21108 318 aa13.19□□□□□ -0.3
USP49-201ENST00000373006 SOX3P41225 446 aa13.19□□□□□ -0.3
USP49-201ENST00000373006 MXD1Q05195 221 aa13.19□□□□□ -0.3
USP49-201ENST00000373006 CSTF3Q12996 717 aaKnown RBP13.19□□□□□ -0.3
USP49-201ENST00000373006 RSPO2Q6UXX9 243 aaPredicted RBP13.19□□□□□ -0.3
USP49-201ENST00000373006 LAX1Q8IWV1 398 aa13.19□□□□□ -0.3
USP49-201ENST00000373006 LGI4Q8N135 537 aa13.19□□□□□ -0.3
USP49-201ENST00000373006 SYNPOQ8N3V7 929 aa13.19□□□□□ -0.3
USP49-201ENST00000373006 VPS35Q96QK1 796 aa13.19□□□□□ -0.3
USP49-201ENST00000373006 RANGRFQ9HD47 186 aaPredicted RBP13.19□□□□□ -0.3
USP49-201ENST00000373006 SNTG1Q9NSN8 517 aa13.19□□□□□ -0.3
USP49-201ENST00000373006 NUFIP1Q9UHK0 495 aaKnown RBP13.19□□□□□ -0.3
USP49-201ENST00000373006 KLHL20Q9Y2M5 609 aa13.19□□□□□ -0.3
USP49-201ENST00000373006 KLK4Q9Y5K2 254 aa13.19□□□□□ -0.3
USP49-201ENST00000373006 GOLGA4Q13439 2230 aaKnown RBP13.19□□□□□ -0.3
USP49-201ENST00000373006 NT5C1B-RDH14C9J2C7 533 aa13.19□□□□□ -0.3
USP49-201ENST00000373006 H3BUI4 141 aa13.19□□□□□ -0.3
USP49-201ENST00000373006 GCM2O75603 506 aaPredicted RBP13.19□□□□□ -0.3
USP49-201ENST00000373006 ATF4P18848 351 aaPredicted RBP13.19□□□□□ -0.3
USP49-201ENST00000373006 ITGALP20701 1170 aa13.19□□□□□ -0.3
USP49-201ENST00000373006 MAPK1P28482 360 aa13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms