RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 NDRG2Q9UN36 371 aaKnown RBP6.55□□□□□ -1.36
VPS39-202ENST00000348544 COMMD10Q9Y6G5 202 aa6.55□□□□□ -1.36
VPS39-202ENST00000348544 UTRNP46939 3433 aa6.55□□□□□ -1.36
VPS39-202ENST00000348544 ALPK3Q96L96 1907 aa6.54□□□□□ -1.36
VPS39-202ENST00000348544 A0A1W2PQL4 384 aaPredicted RBP6.54□□□□□ -1.36
VPS39-202ENST00000348544 PRAMEF25A6NGN4 478 aa6.54□□□□□ -1.36
VPS39-202ENST00000348544 UPK3BL1B0FP48 263 aa6.54□□□□□ -1.36
VPS39-202ENST00000348544 UPK3BL2E5RIL1 263 aa6.54□□□□□ -1.36
VPS39-202ENST00000348544 TNFRSF10BO14763 440 aa6.54□□□□□ -1.36
VPS39-202ENST00000348544 FPGTO14772 594 aa6.54□□□□□ -1.36
VPS39-202ENST00000348544 PLD2O14939 933 aa6.54□□□□□ -1.36
VPS39-202ENST00000348544 YY2O15391 372 aa6.54□□□□□ -1.36
VPS39-202ENST00000348544 TREHO43280 583 aa6.54□□□□□ -1.36
VPS39-202ENST00000348544 PRAMEF11O60813 436 aa6.54□□□□□ -1.36
VPS39-202ENST00000348544 RAMP2O60895 175 aa6.54□□□□□ -1.36
VPS39-202ENST00000348544 NBNO60934 754 aa6.54□□□□□ -1.36
VPS39-202ENST00000348544 SCN2BO60939 215 aa6.54□□□□□ -1.36
VPS39-202ENST00000348544 WDR47O94967 919 aa6.54□□□□□ -1.36
VPS39-202ENST00000348544 PDYNP01213 254 aa6.54□□□□□ -1.36
VPS39-202ENST00000348544 PDGFAP04085 211 aa6.54□□□□□ -1.36
VPS39-202ENST00000348544 MSL3P1P0C860 447 aa6.54□□□□□ -1.36
VPS39-202ENST00000348544 SRCP12931 536 aa6.54□□□□□ -1.36
VPS39-202ENST00000348544 EPORP19235 508 aa6.54□□□□□ -1.36
VPS39-202ENST00000348544 PCSK1P29120 753 aa6.54□□□□□ -1.36
VPS39-202ENST00000348544 EVI2BP34910 448 aa6.54□□□□□ -1.36
VPS39-202ENST00000348544 PTGS2P35354 604 aa6.54□□□□□ -1.36
VPS39-202ENST00000348544 TTPAP49638 278 aa6.54□□□□□ -1.36
VPS39-202ENST00000348544 MAPK12P53778 367 aa6.54□□□□□ -1.36
VPS39-202ENST00000348544 WNT3P56703 355 aa6.54□□□□□ -1.36
VPS39-202ENST00000348544 TAGLNQ01995 201 aaKnown RBP6.54□□□□□ -1.36
VPS39-202ENST00000348544 ALDH6A1Q02252 535 aaKnown RBP6.54□□□□□ -1.36
VPS39-202ENST00000348544 ZNF235Q14590 738 aa6.54□□□□□ -1.36
VPS39-202ENST00000348544 TAF1AQ15573 450 aaPredicted RBP6.54□□□□□ -1.36
VPS39-202ENST00000348544 PAN2Q504Q3 1202 aaKnown RBP6.54□□□□□ -1.36
VPS39-202ENST00000348544 ZRANB3Q5FWF4 1079 aa6.54□□□□□ -1.36
VPS39-202ENST00000348544 PLAG1Q6DJT9 500 aa6.54□□□□□ -1.36
VPS39-202ENST00000348544 CCSAPQ6IQ19 270 aaPredicted RBP6.54□□□□□ -1.36
VPS39-202ENST00000348544 FBXL22Q6P050 247 aa6.54□□□□□ -1.36
VPS39-202ENST00000348544 CLECL1Q8IZS7 167 aa6.54□□□□□ -1.36
VPS39-202ENST00000348544 SYNPOQ8N3V7 929 aa6.54□□□□□ -1.36
VPS39-202ENST00000348544 SDR16C5Q8N3Y7 309 aa6.54□□□□□ -1.36
VPS39-202ENST00000348544 C2orf69Q8N8R5 385 aa6.54□□□□□ -1.36
VPS39-202ENST00000348544 ENKURQ8TC29 256 aa6.54□□□□□ -1.36
VPS39-202ENST00000348544 LKAAEAR1Q8TD35 194 aa6.54□□□□□ -1.36
VPS39-202ENST00000348544 CREB3L4Q8TEY5 395 aa6.54□□□□□ -1.36
VPS39-202ENST00000348544 MAL2Q969L2 176 aa6.54□□□□□ -1.36
VPS39-202ENST00000348544 UPRTQ96BW1 309 aa6.54□□□□□ -1.36
VPS39-202ENST00000348544 ZBED6CLQ96FA7 236 aaPredicted RBP6.54□□□□□ -1.36
VPS39-202ENST00000348544 TMEM80Q96HE8 168 aa6.54□□□□□ -1.36
VPS39-202ENST00000348544 EXOC2Q96KP1 924 aa6.54□□□□□ -1.36
VPS39-202ENST00000348544 APOL5Q9BWW9 433 aa6.54□□□□□ -1.36
VPS39-202ENST00000348544 CD244Q9BZW8 370 aa6.54□□□□□ -1.36
VPS39-202ENST00000348544 P2RY12Q9H244 342 aa6.54□□□□□ -1.36
VPS39-202ENST00000348544 PDFQ9HBH1 243 aa6.54□□□□□ -1.36
VPS39-202ENST00000348544 IMPAD1Q9NX62 359 aa6.54□□□□□ -1.36
VPS39-202ENST00000348544 TRPS1Q9UHF7 1281 aa6.54□□□□□ -1.36
VPS39-202ENST00000348544 RABL2BQ9UNT1 228 aa6.54□□□□□ -1.36
VPS39-202ENST00000348544 PADI2Q9Y2J8 665 aa6.54□□□□□ -1.36
VPS39-202ENST00000348544 DHRS7Q9Y394 339 aa6.54□□□□□ -1.36
VPS39-202ENST00000348544 AUP1Q9Y679 476 aa6.54□□□□□ -1.36
VPS39-202ENST00000348544 CLCA3PQ9Y6N3 262 aa6.54□□□□□ -1.36
VPS39-202ENST00000348544 PTPRDP23468 1912 aa6.54□□□□□ -1.36
VPS39-202ENST00000348544 MYO16Q9Y6X6 1858 aa6.54□□□□□ -1.36
VPS39-202ENST00000348544 IGLV3-10A0A075B6K4 115 aa6.54□□□□□ -1.36
VPS39-202ENST00000348544 CIB4A0PJX0 185 aa6.54□□□□□ -1.36
VPS39-202ENST00000348544 SMIM30A4D0T7 59 aa6.54□□□□□ -1.36
VPS39-202ENST00000348544 LINC00862A6NCI5 91 aa6.54□□□□□ -1.36
VPS39-202ENST00000348544 FABP12A6NFH5 140 aa6.54□□□□□ -1.36
VPS39-202ENST00000348544 CASTOR2A6NHX0 329 aa6.54□□□□□ -1.36
VPS39-202ENST00000348544 ADM5C9JUS6 153 aa6.54□□□□□ -1.36
VPS39-202ENST00000348544 CSO75390 466 aaKnown RBP6.54□□□□□ -1.36
VPS39-202ENST00000348544 OR7A10O76100 309 aa6.54□□□□□ -1.36
VPS39-202ENST00000348544 CDRT1O95170 752 aa6.54□□□□□ -1.36
VPS39-202ENST00000348544 MMP3P08254 477 aa6.54□□□□□ -1.36
VPS39-202ENST00000348544 POU2F1P14859 743 aa6.54□□□□□ -1.36
VPS39-202ENST00000348544 ACPPP15309 386 aa6.54□□□□□ -1.36
VPS39-202ENST00000348544 ITGB7P26010 798 aa6.54□□□□□ -1.36
VPS39-202ENST00000348544 BRCC3P46736 316 aa6.54□□□□□ -1.36
VPS39-202ENST00000348544 SOX9P48436 509 aa6.54□□□□□ -1.36
VPS39-202ENST00000348544 MAN2A2P49641 1150 aa6.54□□□□□ -1.36
VPS39-202ENST00000348544 CLCN4P51793 760 aa6.54□□□□□ -1.36
VPS39-202ENST00000348544 DGKEP52429 567 aa6.54□□□□□ -1.36
VPS39-202ENST00000348544 SNTA1Q13424 505 aa6.54□□□□□ -1.36
VPS39-202ENST00000348544 CPSF6Q16630 551 aaKnown RBP eCLIP6.54□□□□□ -1.36
VPS39-202ENST00000348544 DUOXA1Q1HG43 343 aa6.54□□□□□ -1.36
VPS39-202ENST00000348544 EXOC3L2Q2M3D2 409 aa6.54□□□□□ -1.36
VPS39-202ENST00000348544 ZBTB37Q5TC79 503 aa6.54□□□□□ -1.36
VPS39-202ENST00000348544 ALG1LQ6GMV1 187 aa6.54□□□□□ -1.36
VPS39-202ENST00000348544 ERICH5Q6P6B1 374 aa6.54□□□□□ -1.36
VPS39-202ENST00000348544 TMEM65Q6PI78 240 aa6.54□□□□□ -1.36
VPS39-202ENST00000348544 LGI4Q8N135 537 aa6.54□□□□□ -1.36
VPS39-202ENST00000348544 CHCHD4Q8N4Q1 142 aa6.54□□□□□ -1.36
VPS39-202ENST00000348544 GDPD1Q8N9F7 314 aa6.54□□□□□ -1.36
VPS39-202ENST00000348544 CHTF18Q8WVB6 975 aa6.54□□□□□ -1.36
VPS39-202ENST00000348544 NELL1Q92832 810 aa6.54□□□□□ -1.36
VPS39-202ENST00000348544 SLC25A46Q96AG3 418 aa6.54□□□□□ -1.36
VPS39-202ENST00000348544 SH3KBP1Q96B97 665 aa6.54□□□□□ -1.36
VPS39-202ENST00000348544 DIRAS2Q96HU8 199 aa6.54□□□□□ -1.36
VPS39-202ENST00000348544 MSLNLQ96KJ4 702 aa6.54□□□□□ -1.36
VPS39-202ENST00000348544 PANX1Q96RD7 426 aa6.54□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms