RNA–Protein interactions for RNA: ENST00000339997.8

RTN3-202, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,886 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-202ENST00000339997 IER5LQ5T953 404 aa8.43□□□□□ -1.06
RTN3-202ENST00000339997 GPC2Q8N158 579 aa8.43□□□□□ -1.06
RTN3-202ENST00000339997 SCAMP4Q969E2 229 aa8.43□□□□□ -1.06
RTN3-202ENST00000339997 FBXL18Q96ME1 805 aa8.43□□□□□ -1.06
RTN3-202ENST00000339997 ACBD6Q9BR61 282 aa8.43□□□□□ -1.06
RTN3-202ENST00000339997 GPR83Q9NYM4 423 aa8.43□□□□□ -1.06
RTN3-202ENST00000339997 SLC27A6Q9Y2P4 619 aa8.43□□□□□ -1.06
RTN3-202ENST00000339997 COL4A1P02462 1669 aa8.43□□□□□ -1.06
RTN3-202ENST00000339997 CACNA1FO60840 1977 aa8.43□□□□□ -1.06
RTN3-202ENST00000339997 M0R036 132 aa8.43□□□□□ -1.06
RTN3-202ENST00000339997 QSOX1O00391 747 aa8.43□□□□□ -1.06
RTN3-202ENST00000339997 OR2B3O76000 313 aa8.43□□□□□ -1.06
RTN3-202ENST00000339997 H1F0P07305 194 aaKnown RBP8.43□□□□□ -1.06
RTN3-202ENST00000339997 ACP5P13686 325 aa8.43□□□□□ -1.06
RTN3-202ENST00000339997 PRPS1L1P21108 318 aa8.43□□□□□ -1.06
RTN3-202ENST00000339997 GLDCP23378 1020 aa8.43□□□□□ -1.06
RTN3-202ENST00000339997 EDNRAP25101 427 aa8.43□□□□□ -1.06
RTN3-202ENST00000339997 ARSJQ5FYB0 599 aaPredicted RBP8.43□□□□□ -1.06
RTN3-202ENST00000339997 ZNF782Q6ZMW2 699 aaPredicted RBP8.43□□□□□ -1.06
RTN3-202ENST00000339997 Q6ZVU0 165 aa8.43□□□□□ -1.06
RTN3-202ENST00000339997 SIAH1Q8IUQ4 282 aa8.43□□□□□ -1.06
RTN3-202ENST00000339997 CCDC36Q8IYA8 594 aa8.43□□□□□ -1.06
RTN3-202ENST00000339997 COX18Q8N8Q8 333 aa8.43□□□□□ -1.06
RTN3-202ENST00000339997 DBF4BQ8NFT6 615 aa8.43□□□□□ -1.06
RTN3-202ENST00000339997 GATAD2BQ8WXI9 593 aa8.43□□□□□ -1.06
RTN3-202ENST00000339997 NUSAP1Q9BXS6 441 aaKnown RBP8.43□□□□□ -1.06
RTN3-202ENST00000339997 SMG9Q9H0W8 520 aaKnown RBP8.43□□□□□ -1.06
RTN3-202ENST00000339997 ZNF318Q5VUA4 2279 aa8.43□□□□□ -1.06
RTN3-202ENST00000339997 NFAT5O94916 1531 aa8.43□□□□□ -1.06
RTN3-202ENST00000339997 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP8.42□□□□□ -1.06
RTN3-202ENST00000339997 SMIM35A0A1B0GVV1 85 aa8.42□□□□□ -1.06
RTN3-202ENST00000339997 EEF1E1O43324 174 aaKnown RBP8.42□□□□□ -1.06
RTN3-202ENST00000339997 KIAA0513O60268 411 aa8.42□□□□□ -1.06
RTN3-202ENST00000339997 FPR1P21462 350 aa8.42□□□□□ -1.06
RTN3-202ENST00000339997 CDH4P55283 916 aa8.42□□□□□ -1.06
RTN3-202ENST00000339997 TUBA4AP68366 448 aa8.42□□□□□ -1.06
RTN3-202ENST00000339997 FGFBP1Q14512 234 aa8.42□□□□□ -1.06
RTN3-202ENST00000339997 TAF1AQ15573 450 aaPredicted RBP8.42□□□□□ -1.06
RTN3-202ENST00000339997 C1orf220Q5T0J3 134 aa8.42□□□□□ -1.06
RTN3-202ENST00000339997 LYPLAL1Q5VWZ2 237 aa8.42□□□□□ -1.06
RTN3-202ENST00000339997 FUT10Q6P4F1 479 aa8.42□□□□□ -1.06
RTN3-202ENST00000339997 C15orf52Q6ZUT6 534 aaKnown RBP8.42□□□□□ -1.06
RTN3-202ENST00000339997 MARVELD2Q8N4S9 558 aa8.42□□□□□ -1.06
RTN3-202ENST00000339997 JAGN1Q8N5M9 183 aa8.42□□□□□ -1.06
RTN3-202ENST00000339997 SETD6Q8TBK2 473 aa8.42□□□□□ -1.06
RTN3-202ENST00000339997 LRCH3Q96II8 777 aa8.42□□□□□ -1.06
RTN3-202ENST00000339997 RIOK2Q9BVS4 552 aaKnown RBP8.42□□□□□ -1.06
RTN3-202ENST00000339997 MAGEH1Q9H213 219 aa8.42□□□□□ -1.06
RTN3-202ENST00000339997 MMP28Q9H239 520 aa8.42□□□□□ -1.06
RTN3-202ENST00000339997 TOGARAM1Q9Y4F4 1720 aa8.42□□□□□ -1.06
RTN3-202ENST00000339997 A0A1W2PRU2 124 aa8.42□□□□□ -1.06
RTN3-202ENST00000339997 A6NL46 340 aa8.42□□□□□ -1.06
RTN3-202ENST00000339997 ANKRD66B4E2M5 251 aa8.42□□□□□ -1.06
RTN3-202ENST00000339997 C1QTNF3-AMACRE9PGA6 284 aa8.42□□□□□ -1.06
RTN3-202ENST00000339997 PITPNM1O00562 1244 aa8.42□□□□□ -1.06
RTN3-202ENST00000339997 ERI3O43414 337 aaKnown RBP8.42□□□□□ -1.06
RTN3-202ENST00000339997 APOC1P02654 83 aa8.42□□□□□ -1.06
RTN3-202ENST00000339997 CDK4P11802 303 aa8.42□□□□□ -1.06
RTN3-202ENST00000339997 ARCN1P48444 511 aaKnown RBP8.42□□□□□ -1.06
RTN3-202ENST00000339997 SEC13P55735 322 aa8.42□□□□□ -1.06
RTN3-202ENST00000339997 RFTN2Q52LD8 501 aaPredicted RBP8.42□□□□□ -1.06
RTN3-202ENST00000339997 CYBRD1Q53TN4 286 aa8.42□□□□□ -1.06
RTN3-202ENST00000339997 ATAT1Q5SQI0 421 aa8.42□□□□□ -1.06
RTN3-202ENST00000339997 SLC22A15Q8IZD6 547 aa8.42□□□□□ -1.06
RTN3-202ENST00000339997 RASGEF1AQ8N9B8 481 aa8.42□□□□□ -1.06
RTN3-202ENST00000339997 Q8N9G6 341 aaPredicted RBP8.42□□□□□ -1.06
RTN3-202ENST00000339997 GALNT11Q8NCW6 608 aa8.42□□□□□ -1.06
RTN3-202ENST00000339997 ABHD11Q8NFV4 315 aa8.42□□□□□ -1.06
RTN3-202ENST00000339997 LCN9Q8WX39 176 aa8.42□□□□□ -1.06
RTN3-202ENST00000339997 SCLYQ96I15 445 aa8.42□□□□□ -1.06
RTN3-202ENST00000339997 SMOQ99835 787 aa8.42□□□□□ -1.06
RTN3-202ENST00000339997 TLE6Q9H808 572 aa8.42□□□□□ -1.06
RTN3-202ENST00000339997 MED11Q9P086 117 aa8.42□□□□□ -1.06
RTN3-202ENST00000339997 SPATA7Q9P0W8 599 aa8.42□□□□□ -1.06
RTN3-202ENST00000339997 EXTL2Q9UBQ6 330 aa8.42□□□□□ -1.06
RTN3-202ENST00000339997 TAC3Q9UHF0 121 aa8.42□□□□□ -1.06
RTN3-202ENST00000339997 NUFIP1Q9UHK0 495 aaKnown RBP8.42□□□□□ -1.06
RTN3-202ENST00000339997 NWD2Q9ULI1 1742 aa8.42□□□□□ -1.06
RTN3-202ENST00000339997 DNAH14Q0VDD8 3507 aa8.42□□□□□ -1.06
RTN3-202ENST00000339997 EIF1AYO14602 144 aaKnown RBP8.42□□□□□ -1.06
RTN3-202ENST00000339997 PROM1O43490 865 aa8.42□□□□□ -1.06
RTN3-202ENST00000339997 FMO6PO60774 539 aa8.42□□□□□ -1.06
RTN3-202ENST00000339997 HAPLN1P10915 354 aaPredicted RBP8.42□□□□□ -1.06
RTN3-202ENST00000339997 GRK5P34947 590 aa8.42□□□□□ -1.06
RTN3-202ENST00000339997 ACVR1BP36896 505 aa8.42□□□□□ -1.06
RTN3-202ENST00000339997 CAV3P56539 151 aa8.42□□□□□ -1.06
RTN3-202ENST00000339997 DSTNP60981 165 aa8.42□□□□□ -1.06
RTN3-202ENST00000339997 RPS13P62277 151 aaKnown RBP8.42□□□□□ -1.06
RTN3-202ENST00000339997 RELAQ04206 551 aa8.42□□□□□ -1.06
RTN3-202ENST00000339997 ARFRP1Q13795 201 aa8.42□□□□□ -1.06
RTN3-202ENST00000339997 SLC36A3Q495N2 470 aa8.42□□□□□ -1.06
RTN3-202ENST00000339997 KLHL26Q53HC5 615 aa8.42□□□□□ -1.06
RTN3-202ENST00000339997 LRRC66Q68CR7 880 aa8.42□□□□□ -1.06
RTN3-202ENST00000339997 SPNS2Q8IVW8 549 aa8.42□□□□□ -1.06
RTN3-202ENST00000339997 CCDC28AQ8IWP9 274 aa8.42□□□□□ -1.06
RTN3-202ENST00000339997 CMTM8Q8IZV2 173 aa8.42□□□□□ -1.06
RTN3-202ENST00000339997 OR51A7Q8NH64 312 aa8.42□□□□□ -1.06
RTN3-202ENST00000339997 FCGR1BQ92637 280 aa8.42□□□□□ -1.06
RTN3-202ENST00000339997 BORCS6Q96GS4 357 aa8.42□□□□□ -1.06
RTN3-202ENST00000339997 ZNF347Q96SE7 839 aa8.42□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 57.2 ms