RNA–Protein interactions for RNA: ENST00000332345.10

LIMS1-201, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMS1, Length 1,235 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-201ENST00000332345 HPDP32754 393 aaPredicted RBP13.3□□□□□ -0.28
LIMS1-201ENST00000332345 CASP2P42575 452 aa13.3□□□□□ -0.28
LIMS1-201ENST00000332345 AGTR2P50052 363 aa13.3□□□□□ -0.28
LIMS1-201ENST00000332345 IRF8Q02556 426 aa13.3□□□□□ -0.28
LIMS1-201ENST00000332345 DOC2AQ14183 400 aa13.3□□□□□ -0.28
LIMS1-201ENST00000332345 SLBPQ14493 270 aaKnown RBP eCLIP13.3□□□□□ -0.28
LIMS1-201ENST00000332345 SETDB1Q15047 1291 aa13.3□□□□□ -0.28
LIMS1-201ENST00000332345 TBCCQ15814 346 aa13.3□□□□□ -0.28
LIMS1-201ENST00000332345 TECRLQ5HYJ1 363 aa13.3□□□□□ -0.28
LIMS1-201ENST00000332345 EMBQ6PCB8 327 aa13.3□□□□□ -0.28
LIMS1-201ENST00000332345 ABHD13Q7L211 337 aa13.3□□□□□ -0.28
LIMS1-201ENST00000332345 ANKRD53Q8N9V6 530 aa13.3□□□□□ -0.28
LIMS1-201ENST00000332345 OR9A4Q8NGU2 314 aa13.3□□□□□ -0.28
LIMS1-201ENST00000332345 UBE2E3Q969T4 207 aa13.3□□□□□ -0.28
LIMS1-201ENST00000332345 WDR34Q96EX3 536 aa13.3□□□□□ -0.28
LIMS1-201ENST00000332345 FER1L6-AS2Q96M78 137 aa13.3□□□□□ -0.28
LIMS1-201ENST00000332345 TGIF2Q9GZN2 237 aa13.3□□□□□ -0.28
LIMS1-201ENST00000332345 ING2Q9H160 280 aa13.3□□□□□ -0.28
LIMS1-201ENST00000332345 SPNS1Q9H2V7 528 aa13.3□□□□□ -0.28
LIMS1-201ENST00000332345 MRPL46Q9H2W6 279 aaKnown RBP13.3□□□□□ -0.28
LIMS1-201ENST00000332345 SOX17Q9H6I2 414 aaPredicted RBP13.3□□□□□ -0.28
LIMS1-201ENST00000332345 ACSS2Q9NR19 701 aa13.3□□□□□ -0.28
LIMS1-201ENST00000332345 SEMA3GQ9NS98 782 aa13.3□□□□□ -0.28
LIMS1-201ENST00000332345 C14orf105Q9NVL8 296 aa13.3□□□□□ -0.28
LIMS1-201ENST00000332345 CPSF2Q9P2I0 782 aaKnown RBP13.3□□□□□ -0.28
LIMS1-201ENST00000332345 COPG2Q9UBF2 871 aa13.3□□□□□ -0.28
LIMS1-201ENST00000332345 CTSFQ9UBX1 484 aa13.3□□□□□ -0.28
LIMS1-201ENST00000332345 PIEZO2Q9H5I5 2752 aa13.3□□□□□ -0.28
LIMS1-201ENST00000332345 ARGFXA6NJG6 315 aa13.29□□□□□ -0.28
LIMS1-201ENST00000332345 MKRN2OSH3BPM6 223 aa13.29□□□□□ -0.28
LIMS1-201ENST00000332345 SHBGP04278 402 aa13.29□□□□□ -0.28
LIMS1-201ENST00000332345 TUBBP07437 444 aa13.29□□□□□ -0.28
LIMS1-201ENST00000332345 ALOX12P18054 663 aa13.29□□□□□ -0.28
LIMS1-201ENST00000332345 HSD17B3P37058 310 aa13.29□□□□□ -0.28
LIMS1-201ENST00000332345 PIK3CGP48736 1102 aa13.29□□□□□ -0.28
LIMS1-201ENST00000332345 STXBP1P61764 594 aaKnown RBP13.29□□□□□ -0.28
LIMS1-201ENST00000332345 KLC1Q07866 573 aa13.29□□□□□ -0.28
LIMS1-201ENST00000332345 PCDH1Q08174 1060 aa13.29□□□□□ -0.28
LIMS1-201ENST00000332345 CHIT1Q13231 466 aa13.29□□□□□ -0.28
LIMS1-201ENST00000332345 KCNAB2Q13303 367 aa13.29□□□□□ -0.28
LIMS1-201ENST00000332345 NAA30Q147X3 362 aaPredicted RBP13.29□□□□□ -0.28
LIMS1-201ENST00000332345 PCBP2Q15366 365 aaKnown RBP eCLIP13.29□□□□□ -0.282e-8■■■■■ 28.8
LIMS1-201ENST00000332345 ERCC6LQ2NKX8 1250 aa13.29□□□□□ -0.28
LIMS1-201ENST00000332345 VWA2Q5GFL6 755 aa13.29□□□□□ -0.28
LIMS1-201ENST00000332345 SHISA6Q6ZSJ9 500 aa13.29□□□□□ -0.28
LIMS1-201ENST00000332345 TDRPQ86YL5 185 aa13.29□□□□□ -0.28
LIMS1-201ENST00000332345 TEX9Q8N6V9 391 aa13.29□□□□□ -0.28
LIMS1-201ENST00000332345 AMER3Q8N944 861 aa13.29□□□□□ -0.28
LIMS1-201ENST00000332345 ZCCHC10Q8TBK6 192 aa13.29□□□□□ -0.28
LIMS1-201ENST00000332345 MOCOSQ96EN8 888 aa13.29□□□□□ -0.28
LIMS1-201ENST00000332345 SPSB2Q99619 263 aa13.29□□□□□ -0.28
LIMS1-201ENST00000332345 CRB3Q9BUF7 120 aa13.29□□□□□ -0.28
LIMS1-201ENST00000332345 CLK4Q9HAZ1 481 aaKnown RBP13.29□□□□□ -0.28
LIMS1-201ENST00000332345 NOL12Q9UGY1 213 aaKnown RBP eCLIP13.29□□□□□ -0.28
LIMS1-201ENST00000332345 DCDC2Q9UHG0 476 aa13.29□□□□□ -0.28
LIMS1-201ENST00000332345 MRPS2Q9Y399 296 aaKnown RBP13.29□□□□□ -0.28
LIMS1-201ENST00000332345 NAALAD2Q9Y3Q0 740 aa13.29□□□□□ -0.28
LIMS1-201ENST00000332345 V9GYY5 206 aaPredicted RBP13.29□□□□□ -0.28
LIMS1-201ENST00000332345 MED13Q9UHV7 2174 aa13.29□□□□□ -0.28
LIMS1-201ENST00000332345 SGK494L7N484 410 aa13.28□□□□□ -0.28
LIMS1-201ENST00000332345 PCDH17O14917 1159 aa13.28□□□□□ -0.28
LIMS1-201ENST00000332345 CLEC3AO75596 197 aa13.28□□□□□ -0.28
LIMS1-201ENST00000332345 WFS1O76024 890 aa13.28□□□□□ -0.28
LIMS1-201ENST00000332345 KLHL18O94889 574 aa13.28□□□□□ -0.28
LIMS1-201ENST00000332345 HEXBP07686 556 aa13.28□□□□□ -0.28
LIMS1-201ENST00000332345 GSTA1P08263 222 aa13.28□□□□□ -0.28
LIMS1-201ENST00000332345 IL1RNP18510 177 aa13.28□□□□□ -0.28
LIMS1-201ENST00000332345 KRT15P19012 456 aa13.28□□□□□ -0.28
LIMS1-201ENST00000332345 TAC1P20366 129 aa13.28□□□□□ -0.28
LIMS1-201ENST00000332345 IL10P22301 178 aa13.28□□□□□ -0.28
LIMS1-201ENST00000332345 CCL11P51671 97 aa13.28□□□□□ -0.28
LIMS1-201ENST00000332345 EMP2P54851 167 aa13.28□□□□□ -0.28
LIMS1-201ENST00000332345 ATP1A4Q13733 1029 aa13.28□□□□□ -0.28
LIMS1-201ENST00000332345 RASA2Q15283 850 aa13.28□□□□□ -0.28
LIMS1-201ENST00000332345 MRGPREQ86SM8 312 aa13.28□□□□□ -0.28
LIMS1-201ENST00000332345 AFAP1L2Q8N4X5 818 aa13.28□□□□□ -0.28
LIMS1-201ENST00000332345 OR51Q1Q8NH59 317 aa13.28□□□□□ -0.28
LIMS1-201ENST00000332345 UTP15Q8TED0 518 aaKnown RBP13.28□□□□□ -0.28
LIMS1-201ENST00000332345 CREB3L4Q8TEY5 395 aa13.28□□□□□ -0.28
LIMS1-201ENST00000332345 CCT6BQ92526 530 aa13.28□□□□□ -0.28
LIMS1-201ENST00000332345 PHF21BQ96EK2 531 aa13.28□□□□□ -0.28
LIMS1-201ENST00000332345 PARD6BQ9BYG5 372 aa13.28□□□□□ -0.28
LIMS1-201ENST00000332345 SLC6A16Q9GZN6 736 aa13.28□□□□□ -0.28
LIMS1-201ENST00000332345 SLC25A18Q9H1K4 315 aa13.28□□□□□ -0.28
LIMS1-201ENST00000332345 RHBGQ9H310 441 aa13.28□□□□□ -0.28
LIMS1-201ENST00000332345 PRM3Q9NNZ6 103 aa13.28□□□□□ -0.28
LIMS1-201ENST00000332345 P4HTMQ9NXG6 502 aa13.28□□□□□ -0.28
LIMS1-201ENST00000332345 XPR1Q9UBH6 696 aa13.28□□□□□ -0.28
LIMS1-201ENST00000332345 C3orf18Q9UK00 162 aa13.28□□□□□ -0.28
LIMS1-201ENST00000332345 ZNF490Q9ULM2 529 aaPredicted RBP13.28□□□□□ -0.28
LIMS1-201ENST00000332345 G3BP2Q9UN86 482 aaKnown RBP13.28□□□□□ -0.28
LIMS1-201ENST00000332345 ASB1Q9Y576 335 aa13.28□□□□□ -0.28
LIMS1-201ENST00000332345 SMG1Q96Q15 3661 aaKnown RBP13.28□□□□□ -0.28
LIMS1-201ENST00000332345 STX16-NPEPL1H3BU86 382 aa13.27□□□□□ -0.29
LIMS1-201ENST00000332345 AGPSO00116 658 aa13.27□□□□□ -0.29
LIMS1-201ENST00000332345 STX16O14662 325 aa13.27□□□□□ -0.29
LIMS1-201ENST00000332345 GALR3O60755 368 aaPredicted RBP13.27□□□□□ -0.29
LIMS1-201ENST00000332345 PRAMEF4O60810 478 aa13.27□□□□□ -0.29
LIMS1-201ENST00000332345 CDH16O75309 829 aa13.27□□□□□ -0.29
LIMS1-201ENST00000332345 BMP10O95393 424 aa13.27□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms