RNA–Protein interactions for RNA: ENST00000324288.12

CIITA-201, Transcript of class II major histocompatibility complex transactivator, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CIITA, Length 11,952 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-201ENST00000324288 CFL2Q9Y281 166 aa7.68□□□□□ -1.18
CIITA-201ENST00000324288 PTCH2Q9Y6C5 1203 aa7.68□□□□□ -1.18
CIITA-201ENST00000324288 ERCC6L2Q5T890 1561 aa7.68□□□□□ -1.18
CIITA-201ENST00000324288 A0A1B0GVG6 124 aa7.68□□□□□ -1.18
CIITA-201ENST00000324288 H1F0P07305 194 aaKnown RBP7.68□□□□□ -1.18
CIITA-201ENST00000324288 GSK3BP49841 420 aa7.68□□□□□ -1.18
CIITA-201ENST00000324288 MYLK3Q32MK0 819 aa7.68□□□□□ -1.18
CIITA-201ENST00000324288 STK35Q8TDR2 534 aa7.68□□□□□ -1.18
CIITA-201ENST00000324288 GAS2L1Q99501 681 aaPredicted RBP7.68□□□□□ -1.18
CIITA-201ENST00000324288 OR10A4Q9H209 315 aa7.68□□□□□ -1.18
CIITA-201ENST00000324288 RANBP3Q9H6Z4 567 aaPredicted RBP7.68□□□□□ -1.18
CIITA-201ENST00000324288 ABCB8Q9NUT2 735 aa7.68□□□□□ -1.18
CIITA-201ENST00000324288 TNFRSF10DQ9UBN6 386 aa7.68□□□□□ -1.18
CIITA-201ENST00000324288 HERV-K104P61576 105 aa7.68□□□□□ -1.18
CIITA-201ENST00000324288 METTL3Q86U44 580 aaKnown RBP7.68□□□□□ -1.18
CIITA-201ENST00000324288 LDAHQ9H6V9 325 aa7.68□□□□□ -1.18
CIITA-201ENST00000324288 ABI3Q9P2A4 366 aa7.68□□□□□ -1.18
CIITA-201ENST00000324288 UBXN7O94888 489 aa7.68□□□□□ -1.18
CIITA-201ENST00000324288 TXNDC12O95881 172 aa7.68□□□□□ -1.18
CIITA-201ENST00000324288 SSTR4P31391 388 aa7.68□□□□□ -1.18
CIITA-201ENST00000324288 TEX44Q53QW1 395 aa7.68□□□□□ -1.18
CIITA-201ENST00000324288 FSTL5Q8N475 847 aaPredicted RBP7.68□□□□□ -1.18
CIITA-201ENST00000324288 ISOC1Q96CN7 298 aa7.68□□□□□ -1.18
CIITA-201ENST00000324288 YTHDF1Q9BYJ9 559 aaKnown RBP7.68□□□□□ -1.18
CIITA-201ENST00000324288 KCNMB3Q9NPA1 279 aa7.68□□□□□ -1.18
CIITA-201ENST00000324288 MS4A12Q9NXJ0 267 aa7.68□□□□□ -1.18
CIITA-201ENST00000324288 SEC14L4Q9UDX3 406 aa7.68□□□□□ -1.18
CIITA-201ENST00000324288 KERAO60938 352 aa7.68□□□□□ -1.18
CIITA-201ENST00000324288 RPL10P27635 214 aaKnown RBP7.68□□□□□ -1.18
CIITA-201ENST00000324288 CLCN4P51793 760 aa7.68□□□□□ -1.18
CIITA-201ENST00000324288 RAB5BP61020 215 aa7.68□□□□□ -1.18
CIITA-201ENST00000324288 KLHL22Q53GT1 634 aa7.68□□□□□ -1.18
CIITA-201ENST00000324288 SLC15A4Q8N697 577 aa7.68□□□□□ -1.18
CIITA-201ENST00000324288 DDX1Q92499 740 aaKnown RBP7.68□□□□□ -1.18
CIITA-201ENST00000324288 TIFAQ96CG3 184 aa7.68□□□□□ -1.18
CIITA-201ENST00000324288 TBCCD1Q9NVR7 557 aa7.68□□□□□ -1.18
CIITA-201ENST00000324288 EBF1Q9UH73 591 aa7.68□□□□□ -1.18
CIITA-201ENST00000324288 NFATC4Q14934 902 aa7.68□□□□□ -1.18
CIITA-201ENST00000324288 OR5T2Q8NGG2 359 aa7.68□□□□□ -1.18
CIITA-201ENST00000324288 DHX33Q9H6R0 707 aaKnown RBP7.68□□□□□ -1.18
CIITA-201ENST00000324288 USP29Q9HBJ7 922 aa7.68□□□□□ -1.18
CIITA-201ENST00000324288 CDH10Q9Y6N8 788 aa7.68□□□□□ -1.18
CIITA-201ENST00000324288 SCNN1AP37088 669 aa7.68□□□□□ -1.18
CIITA-201ENST00000324288 LSSP48449 732 aa7.68□□□□□ -1.18
CIITA-201ENST00000324288 SNU13P55769 128 aaKnown RBP7.68□□□□□ -1.18
CIITA-201ENST00000324288 SLC26A5P58743 744 aa7.68□□□□□ -1.18
CIITA-201ENST00000324288 ZNF829Q3KNS6 432 aaPredicted RBP7.68□□□□□ -1.18
CIITA-201ENST00000324288 CYBRD1Q53TN4 286 aa7.68□□□□□ -1.18
CIITA-201ENST00000324288 ARL14EPQ8N8R7 260 aaPredicted RBP7.68□□□□□ -1.18
CIITA-201ENST00000324288 OR9I1Q8NGQ6 314 aa7.68□□□□□ -1.18
CIITA-201ENST00000324288 NPLOC4Q8TAT6 608 aa7.68□□□□□ -1.18
CIITA-201ENST00000324288 ITPAQ9BY32 194 aa7.68□□□□□ -1.18
CIITA-201ENST00000324288 RBCK1Q9BYM8 510 aa7.68□□□□□ -1.18
CIITA-201ENST00000324288 ERVW-1Q9UQF0 538 aa7.68□□□□□ -1.18
CIITA-201ENST00000324288 SLIT1O75093 1534 aa7.68□□□□□ -1.18
CIITA-201ENST00000324288 IL33O95760 270 aa7.68□□□□□ -1.18
CIITA-201ENST00000324288 ENPP2Q13822 863 aa7.68□□□□□ -1.18
CIITA-201ENST00000324288 TAC4Q86UU9 113 aa7.68□□□□□ -1.18
CIITA-201ENST00000324288 KLRF1Q9NZS2 232 aa7.68□□□□□ -1.18
CIITA-201ENST00000324288 TBL1XR1Q9BZK7 514 aa7.67□□□□□ -1.18
CIITA-201ENST00000324288 RPF2Q9H7B2 306 aaKnown RBP7.67□□□□□ -1.18
CIITA-201ENST00000324288 GTF2IRD1Q9UHL9 959 aa7.67□□□□□ -1.18
CIITA-201ENST00000324288 PXDNQ92626 1479 aa7.67□□□□□ -1.18
CIITA-201ENST00000324288 SETBP1Q9Y6X0 1596 aa7.67□□□□□ -1.18
CIITA-201ENST00000324288 RBM47A0AV96 593 aaKnown RBP7.67□□□□□ -1.18
CIITA-201ENST00000324288 PCDH17O14917 1159 aa7.67□□□□□ -1.18
CIITA-201ENST00000324288 GBAP04062 536 aa7.67□□□□□ -1.18
CIITA-201ENST00000324288 ACRP10323 421 aa7.67□□□□□ -1.18
CIITA-201ENST00000324288 GTF2F2P13984 249 aa7.67□□□□□ -1.18
CIITA-201ENST00000324288 FLT3LGP49771 235 aa7.67□□□□□ -1.18
CIITA-201ENST00000324288 GAD2Q05329 585 aa7.67□□□□□ -1.18
CIITA-201ENST00000324288 PPP1R3AQ16821 1122 aa7.67□□□□□ -1.18
CIITA-201ENST00000324288 EIF5AL1Q6IS14 154 aaKnown RBP7.67□□□□□ -1.18
CIITA-201ENST00000324288 PNLDC1Q8NA58 520 aaKnown RBP7.67□□□□□ -1.18
CIITA-201ENST00000324288 UPF1Q92900 1129 aaKnown RBP eCLIP7.67□□□□□ -1.18
CIITA-201ENST00000324288 POP5Q969H6 163 aaKnown RBP7.67□□□□□ -1.18
CIITA-201ENST00000324288 NUS1Q96E22 293 aa7.67□□□□□ -1.18
CIITA-201ENST00000324288 SYT4Q9H2B2 425 aa7.67□□□□□ -1.18
CIITA-201ENST00000324288 C5orf60A6NFR6 353 aa7.67□□□□□ -1.18
CIITA-201ENST00000324288 INSIG1O15503 277 aa7.67□□□□□ -1.18
CIITA-201ENST00000324288 PRICKLE3O43900 615 aaPredicted RBP7.67□□□□□ -1.18
CIITA-201ENST00000324288 PRAMEF12O95522 483 aa7.67□□□□□ -1.18
CIITA-201ENST00000324288 GPX6P59796 221 aa7.67□□□□□ -1.18
CIITA-201ENST00000324288 EIPR1Q53HC9 387 aa7.67□□□□□ -1.18
CIITA-201ENST00000324288 NKAPLQ5M9Q1 402 aa7.67□□□□□ -1.18
CIITA-201ENST00000324288 LRRC57Q8N9N7 239 aa7.67□□□□□ -1.18
CIITA-201ENST00000324288 PYCR2Q96C36 320 aa7.67□□□□□ -1.18
CIITA-201ENST00000324288 ATG5Q9H1Y0 275 aa7.67□□□□□ -1.18
CIITA-201ENST00000324288 PDZD7Q9H5P4 517 aa7.67□□□□□ -1.18
CIITA-201ENST00000324288 CPQQ9Y646 472 aa7.67□□□□□ -1.18
CIITA-201ENST00000324288 TRBC2A0A5B9 178 aa7.67□□□□□ -1.18
CIITA-201ENST00000324288 OR6C75A6NL08 312 aa7.67□□□□□ -1.18
CIITA-201ENST00000324288 CLIC1O00299 241 aa7.67□□□□□ -1.18
CIITA-201ENST00000324288 HMGN1P05114 100 aa7.67□□□□□ -1.18
CIITA-201ENST00000324288 PBX3P40426 434 aa7.67□□□□□ -1.18
CIITA-201ENST00000324288 EEFSECP57772 596 aaKnown RBP7.67□□□□□ -1.18
CIITA-201ENST00000324288 ZDHHC24Q6UX98 284 aa7.67□□□□□ -1.18
CIITA-201ENST00000324288 CEACAM19Q7Z692 300 aa7.67□□□□□ -1.18
CIITA-201ENST00000324288 PPTC7Q8NI37 304 aa7.67□□□□□ -1.18
CIITA-201ENST00000324288 PCDHB1Q9Y5F3 818 aa7.67□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms