RNA–Protein interactions for RNA: ENST00000612273.1

COL6A1-207, Transcript of collagen type VI alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL6A1, Length 3,251 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-207ENST00000612273 RAET1EQ8TD07 263 aa13.56□□□□□ -0.24
COL6A1-207ENST00000612273 CAPSLQ8WWF8 208 aa13.56□□□□□ -0.24
COL6A1-207ENST00000612273 TSEN34Q9BSV6 310 aaKnown RBP13.56□□□□□ -0.24
COL6A1-207ENST00000612273 SORBS1Q9BX66 1292 aaKnown RBP13.56□□□□□ -0.24
COL6A1-207ENST00000612273 SLC29A3Q9BZD2 475 aa13.56□□□□□ -0.24
COL6A1-207ENST00000612273 CWH43Q9H720 699 aa13.56□□□□□ -0.24
COL6A1-207ENST00000612273 QPCTLQ9NXS2 382 aa13.56□□□□□ -0.24
COL6A1-207ENST00000612273 DUSP12Q9UNI6 340 aa13.56□□□□□ -0.24
COL6A1-207ENST00000612273 PCDHGA4Q9Y5G9 962 aa13.56□□□□□ -0.24
COL6A1-207ENST00000612273 MICAL3Q7RTP6 2002 aa13.56□□□□□ -0.24
COL6A1-207ENST00000612273 CA12O43570 354 aa13.55□□□□□ -0.24
COL6A1-207ENST00000612273 ZNF821O75541 412 aaPredicted RBP13.55□□□□□ -0.24
COL6A1-207ENST00000612273 ITGAMP11215 1152 aa13.55□□□□□ -0.24
COL6A1-207ENST00000612273 SRCP12931 536 aa13.55□□□□□ -0.24
COL6A1-207ENST00000612273 MAGEA8P43361 318 aa13.55□□□□□ -0.24
COL6A1-207ENST00000612273 PCYT1AP49585 367 aa13.55□□□□□ -0.24
COL6A1-207ENST00000612273 CRYBA2P53672 197 aa13.55□□□□□ -0.24
COL6A1-207ENST00000612273 PFN3P60673 137 aa13.55□□□□□ -0.24
COL6A1-207ENST00000612273 RPS13P62277 151 aaKnown RBP13.55□□□□□ -0.24
COL6A1-207ENST00000612273 KCNJ8Q15842 424 aa13.55□□□□□ -0.24
COL6A1-207ENST00000612273 LEXMQ3ZCV2 418 aa13.55□□□□□ -0.24
COL6A1-207ENST00000612273 SYT6Q5T7P8 510 aaPredicted RBP13.55□□□□□ -0.24
COL6A1-207ENST00000612273 STEAP3Q658P3 488 aa13.55□□□□□ -0.24
COL6A1-207ENST00000612273 CAPN13Q6MZZ7 669 aaPredicted RBP13.55□□□□□ -0.24
COL6A1-207ENST00000612273 TPRG1Q6ZUI0 275 aa13.55□□□□□ -0.24
COL6A1-207ENST00000612273 TSPYL5Q86VY4 417 aaPredicted RBP13.55□□□□□ -0.24
COL6A1-207ENST00000612273 OR10G2Q8NGC3 310 aa13.55□□□□□ -0.24
COL6A1-207ENST00000612273 NFKBIDQ8NI38 313 aa13.55□□□□□ -0.24
COL6A1-207ENST00000612273 CYB5D2Q8WUJ1 264 aa13.55□□□□□ -0.24
COL6A1-207ENST00000612273 S100ZQ8WXG8 99 aa13.55□□□□□ -0.24
COL6A1-207ENST00000612273 TMEM169Q96HH4 297 aa13.55□□□□□ -0.24
COL6A1-207ENST00000612273 SCHIP1Q9P0W5 487 aaPredicted RBP13.55□□□□□ -0.24
COL6A1-207ENST00000612273 TPST2O60704 377 aa13.55□□□□□ -0.24
COL6A1-207ENST00000612273 C6orf47O95873 294 aa13.55□□□□□ -0.24
COL6A1-207ENST00000612273 ATP1B2P14415 290 aaPredicted RBP13.55□□□□□ -0.24
COL6A1-207ENST00000612273 TGM1P22735 817 aa13.55□□□□□ -0.24
COL6A1-207ENST00000612273 HLA-FP30511 346 aa13.55□□□□□ -0.24
COL6A1-207ENST00000612273 CTSKP43235 329 aa13.55□□□□□ -0.24
COL6A1-207ENST00000612273 CTSCP53634 463 aa13.55□□□□□ -0.24
COL6A1-207ENST00000612273 ST3GAL4Q11206 333 aa13.55□□□□□ -0.24
COL6A1-207ENST00000612273 CDKN3Q16667 212 aa13.55□□□□□ -0.24
COL6A1-207ENST00000612273 ZNF404Q494X3 552 aa13.55□□□□□ -0.24
COL6A1-207ENST00000612273 GPR33Q49SQ1 333 aa13.55□□□□□ -0.24
COL6A1-207ENST00000612273 UBE2J2Q8N2K1 259 aa13.55□□□□□ -0.24
COL6A1-207ENST00000612273 SLC12A9Q9BXP2 914 aa13.55□□□□□ -0.24
COL6A1-207ENST00000612273 ITPAQ9BY32 194 aa13.55□□□□□ -0.24
COL6A1-207ENST00000612273 ADPRHL2Q9NX46 363 aa13.55□□□□□ -0.24
COL6A1-207ENST00000612273 ERVK13-1Q9NX77 482 aa13.55□□□□□ -0.24
COL6A1-207ENST00000612273 CHD7Q9P2D1 2997 aa13.54□□□□□ -0.24
COL6A1-207ENST00000612273 ARHGEF33A8MVX0 844 aa13.54□□□□□ -0.24
COL6A1-207ENST00000612273 NEDD8-MDP1E9PL57 170 aa13.54□□□□□ -0.24
COL6A1-207ENST00000612273 RFXAPO00287 272 aa13.54□□□□□ -0.24
COL6A1-207ENST00000612273 TSPAN6O43657 245 aa13.54□□□□□ -0.24
COL6A1-207ENST00000612273 C9P02748 559 aa13.54□□□□□ -0.24
COL6A1-207ENST00000612273 SLC10A3P09131 477 aa13.54□□□□□ -0.24
COL6A1-207ENST00000612273 HLA-EP13747 358 aa13.54□□□□□ -0.24
COL6A1-207ENST00000612273 PTGER1P34995 402 aa13.54□□□□□ -0.24
COL6A1-207ENST00000612273 EXOC3L2Q2M3D2 409 aa13.54□□□□□ -0.24
COL6A1-207ENST00000612273 EIF3MQ7L2H7 374 aaKnown RBP13.54□□□□□ -0.24
COL6A1-207ENST00000612273 BCDIN3DQ7Z5W3 292 aaKnown RBP13.54□□□□□ -0.24
COL6A1-207ENST00000612273 LGI4Q8N135 537 aa13.54□□□□□ -0.24
COL6A1-207ENST00000612273 OTUB1Q96FW1 271 aaPredicted RBP13.54□□□□□ -0.24
COL6A1-207ENST00000612273 PKP4Q99569 1192 aa13.54□□□□□ -0.24
COL6A1-207ENST00000612273 RIOK2Q9BVS4 552 aaKnown RBP13.54□□□□□ -0.24
COL6A1-207ENST00000612273 NECTIN3Q9NQS3 549 aa13.54□□□□□ -0.24
COL6A1-207ENST00000612273 MAN2B2Q9Y2E5 1009 aa13.54□□□□□ -0.24
COL6A1-207ENST00000612273 GPC6Q9Y625 555 aaPredicted RBP13.54□□□□□ -0.24
COL6A1-207ENST00000612273 M0R082 166 aa13.54□□□□□ -0.24
COL6A1-207ENST00000612273 PCDH17O14917 1159 aa13.54□□□□□ -0.24
COL6A1-207ENST00000612273 SNPHO15079 494 aa13.54□□□□□ -0.24
COL6A1-207ENST00000612273 IGFBP1P08833 259 aaPredicted RBP13.54□□□□□ -0.24
COL6A1-207ENST00000612273 CKMT1AP12532 417 aa13.54□□□□□ -0.24
COL6A1-207ENST00000612273 HOXD12P35452 270 aa13.54□□□□□ -0.24
COL6A1-207ENST00000612273 TGFBR2P37173 567 aa13.54□□□□□ -0.24
COL6A1-207ENST00000612273 MAGEA2P43356 314 aa13.54□□□□□ -0.24
COL6A1-207ENST00000612273 CSNK1DP48730 415 aa13.54□□□□□ -0.24
COL6A1-207ENST00000612273 TGM4P49221 684 aa13.54□□□□□ -0.24
COL6A1-207ENST00000612273 SMARCB1Q12824 385 aa13.54□□□□□ -0.24
COL6A1-207ENST00000612273 PPIGQ13427 754 aaKnown RBP eCLIP13.54□□□□□ -0.247e-7■■■■□ 19.6
COL6A1-207ENST00000612273 ARMCX4Q5H9R4 360 aa13.54□□□□□ -0.24
COL6A1-207ENST00000612273 ZNF605Q86T29 641 aa13.54□□□□□ -0.24
COL6A1-207ENST00000612273 PLPP6Q8IY26 295 aa13.54□□□□□ -0.24
COL6A1-207ENST00000612273 SCRN2Q96FV2 425 aa13.54□□□□□ -0.24
COL6A1-207ENST00000612273 OR5M11Q96RB7 305 aa13.54□□□□□ -0.24
COL6A1-207ENST00000612273 CTPS2Q9NRF8 586 aa13.54□□□□□ -0.24
COL6A1-207ENST00000612273 C5AR2Q9P296 337 aa13.54□□□□□ -0.24
COL6A1-207ENST00000612273 LSM7Q9UK45 103 aaKnown RBP13.54□□□□□ -0.24
COL6A1-207ENST00000612273 CCL26Q9Y258 94 aa13.54□□□□□ -0.24
COL6A1-207ENST00000612273 ITM2BQ9Y287 266 aa13.54□□□□□ -0.24
COL6A1-207ENST00000612273 KCNE1BA0A087WTH5 132 aa13.54□□□□□ -0.24
COL6A1-207ENST00000612273 TRBV5-4A0A0C4DH59 114 aa13.54□□□□□ -0.24
COL6A1-207ENST00000612273 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP13.54□□□□□ -0.24
COL6A1-207ENST00000612273 OR2A25A4D2G3 310 aa13.54□□□□□ -0.24
COL6A1-207ENST00000612273 HTR3EA5X5Y0 456 aa13.54□□□□□ -0.24
COL6A1-207ENST00000612273 CTDSP2O14595 271 aa13.54□□□□□ -0.24
COL6A1-207ENST00000612273 SCN2BO60939 215 aa13.54□□□□□ -0.24
COL6A1-207ENST00000612273 OXSR1O95747 527 aaPredicted RBP13.54□□□□□ -0.24
COL6A1-207ENST00000612273 C1SP09871 688 aa13.54□□□□□ -0.24
COL6A1-207ENST00000612273 TRPC1P48995 793 aa13.54□□□□□ -0.24
COL6A1-207ENST00000612273 SNRPD1P62314 119 aaKnown RBP13.54□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms