RNA–Protein interactions for RNA: ENST00000552783.5

LIMA1-214, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-214ENST00000552783 PCBP2Q15366 365 aaKnown RBP eCLIP4.69□□□□□ -1.66
LIMA1-214ENST00000552783 ZNF800Q2TB10 664 aaPredicted RBP eCLIP4.69□□□□□ -1.66
LIMA1-214ENST00000552783 TRIM60Q495X7 471 aa4.69□□□□□ -1.66
LIMA1-214ENST00000552783 ARMC4Q5T2S8 1044 aa4.69□□□□□ -1.66
LIMA1-214ENST00000552783 LRIF1Q5T3J3 769 aa4.69□□□□□ -1.66
LIMA1-214ENST00000552783 PRAMEF9Q5VWM5 478 aa4.69□□□□□ -1.66
LIMA1-214ENST00000552783 ZNF467Q7Z7K2 595 aaPredicted RBP4.69□□□□□ -1.66
LIMA1-214ENST00000552783 C11orf74Q86VG3 221 aa4.69□□□□□ -1.66
LIMA1-214ENST00000552783 RAB43Q86YS6 212 aa4.69□□□□□ -1.66
LIMA1-214ENST00000552783 NKAPQ8N5F7 415 aaKnown RBP4.69□□□□□ -1.66
LIMA1-214ENST00000552783 YIPF7Q8N8F6 280 aa4.69□□□□□ -1.66
LIMA1-214ENST00000552783 SIMC1Q8NDZ2 872 aa4.69□□□□□ -1.66
LIMA1-214ENST00000552783 ASIC4Q96FT7 647 aa4.69□□□□□ -1.66
LIMA1-214ENST00000552783 APIPQ96GX9 242 aa4.69□□□□□ -1.66
LIMA1-214ENST00000552783 SLC39A13Q96H72 371 aa4.69□□□□□ -1.66
LIMA1-214ENST00000552783 HDHD5Q9BXW7 423 aa4.69□□□□□ -1.66
LIMA1-214ENST00000552783 ZNF717Q9BY31 904 aaPredicted RBP4.69□□□□□ -1.66
LIMA1-214ENST00000552783 CCNB1IP1Q9NPC3 277 aa4.69□□□□□ -1.66
LIMA1-214ENST00000552783 GKN1Q9NS71 199 aa4.69□□□□□ -1.66
LIMA1-214ENST00000552783 TMEM248Q9NWD8 314 aa4.69□□□□□ -1.66
LIMA1-214ENST00000552783 CCDC59Q9P031 241 aaKnown RBP4.69□□□□□ -1.66
LIMA1-214ENST00000552783 CRNNQ9UBG3 495 aaPredicted RBP4.69□□□□□ -1.66
LIMA1-214ENST00000552783 HCSTQ9UBK5 93 aa4.69□□□□□ -1.66
LIMA1-214ENST00000552783 ERVW-1Q9UQF0 538 aa4.69□□□□□ -1.66
LIMA1-214ENST00000552783 PCDHB9Q9Y5E1 797 aa4.69□□□□□ -1.66
LIMA1-214ENST00000552783 PEX16Q9Y5Y5 336 aa4.69□□□□□ -1.66
LIMA1-214ENST00000552783 HSPE1-MOB4S4R3N1 261 aa4.69□□□□□ -1.66
LIMA1-214ENST00000552783 NLRC5Q86WI3 1866 aa4.69□□□□□ -1.66
LIMA1-214ENST00000552783 PNMA8CA0A1B0GUJ8 204 aa4.68□□□□□ -1.66
LIMA1-214ENST00000552783 B4DXG7 233 aa4.68□□□□□ -1.66
LIMA1-214ENST00000552783 MANBAO00462 879 aa4.68□□□□□ -1.66
LIMA1-214ENST00000552783 PLA2G10O15496 165 aa4.68□□□□□ -1.66
LIMA1-214ENST00000552783 ULK1O75385 1050 aa4.68□□□□□ -1.66
LIMA1-214ENST00000552783 SLITRK5O94991 958 aa4.68□□□□□ -1.66
LIMA1-214ENST00000552783 ESR1P03372 595 aa4.68□□□□□ -1.66
LIMA1-214ENST00000552783 FGF1P05230 155 aa4.68□□□□□ -1.66
LIMA1-214ENST00000552783 C1SP09871 688 aa4.68□□□□□ -1.66
LIMA1-214ENST00000552783 SDC1P18827 310 aa4.68□□□□□ -1.66
LIMA1-214ENST00000552783 PRKACBP22694 351 aa4.68□□□□□ -1.66
LIMA1-214ENST00000552783 UQCRC1P31930 480 aa4.68□□□□□ -1.66
LIMA1-214ENST00000552783 GATMP50440 423 aa4.68□□□□□ -1.66
LIMA1-214ENST00000552783 CAV3P56539 151 aa4.68□□□□□ -1.66
LIMA1-214ENST00000552783 DEFA1P59665 94 aa4.68□□□□□ -1.66
LIMA1-214ENST00000552783 DEFA3P59666 94 aa4.68□□□□□ -1.66
LIMA1-214ENST00000552783 DUSP7Q16829 419 aa4.68□□□□□ -1.66
LIMA1-214ENST00000552783 C10orf62Q5T681 223 aaPredicted RBP4.68□□□□□ -1.66
LIMA1-214ENST00000552783 ADNP2Q6IQ32 1131 aa4.68□□□□□ -1.66
LIMA1-214ENST00000552783 PRSS55Q6UWB4 352 aaPredicted RBP4.68□□□□□ -1.66
LIMA1-214ENST00000552783 DEFB128Q7Z7B8 93 aa4.68□□□□□ -1.66
LIMA1-214ENST00000552783 ZSWIM9Q86XI8 627 aa4.68□□□□□ -1.66
LIMA1-214ENST00000552783 PHF6Q8IWS0 365 aaKnown RBP eCLIP4.68□□□□□ -1.66
LIMA1-214ENST00000552783 IPCEF1Q8WWN9 437 aaPredicted RBP4.68□□□□□ -1.66
LIMA1-214ENST00000552783 PIK3R3Q92569 461 aa4.68□□□□□ -1.66
LIMA1-214ENST00000552783 CCDC120Q96HB5 630 aa4.68□□□□□ -1.66
LIMA1-214ENST00000552783 ZBTB18Q99592 522 aa4.68□□□□□ -1.66
LIMA1-214ENST00000552783 MGLLQ99685 303 aa4.68□□□□□ -1.66
LIMA1-214ENST00000552783 TMEM121BQ9BXQ6 578 aaPredicted RBP4.68□□□□□ -1.66
LIMA1-214ENST00000552783 UCK2Q9BZX2 261 aa4.68□□□□□ -1.66
LIMA1-214ENST00000552783 CIPCQ9C0C6 399 aa4.68□□□□□ -1.66
LIMA1-214ENST00000552783 SRRQ9GZT4 340 aa4.68□□□□□ -1.66
LIMA1-214ENST00000552783 SMURF1Q9HCE7 757 aa4.68□□□□□ -1.66
LIMA1-214ENST00000552783 ANKHQ9HCJ1 492 aa4.68□□□□□ -1.66
LIMA1-214ENST00000552783 HHATLQ9HCP6 504 aa4.68□□□□□ -1.66
LIMA1-214ENST00000552783 EXOSC4Q9NPD3 245 aaKnown RBP4.68□□□□□ -1.66
LIMA1-214ENST00000552783 CREBZFQ9NS37 354 aa4.68□□□□□ -1.66
LIMA1-214ENST00000552783 RAPGEFL1Q9UHV5 662 aa4.68□□□□□ -1.66
LIMA1-214ENST00000552783 MBD1Q9UIS9 605 aaPredicted RBP4.68□□□□□ -1.66
LIMA1-214ENST00000552783 MKLN1Q9UL63 735 aa4.68□□□□□ -1.66
LIMA1-214ENST00000552783 YARS2Q9Y2Z4 477 aaKnown RBP4.68□□□□□ -1.66
LIMA1-214ENST00000552783 MYO16Q9Y6X6 1858 aa4.68□□□□□ -1.66
LIMA1-214ENST00000552783 HMX3A6NHT5 357 aa4.68□□□□□ -1.66
LIMA1-214ENST00000552783 WASH4PA8MWX3 477 aa4.68□□□□□ -1.66
LIMA1-214ENST00000552783 CLIC1O00299 241 aa4.68□□□□□ -1.66
LIMA1-214ENST00000552783 RFXANKO14593 260 aa4.68□□□□□ -1.66
LIMA1-214ENST00000552783 PRRG1O14668 218 aa4.68□□□□□ -1.66
LIMA1-214ENST00000552783 PLD2O14939 933 aa4.68□□□□□ -1.66
LIMA1-214ENST00000552783 DUSP11O75319 330 aaKnown RBP4.68□□□□□ -1.66
LIMA1-214ENST00000552783 SNX4O95219 450 aa4.68□□□□□ -1.66
LIMA1-214ENST00000552783 CCNDBP1O95273 360 aa4.68□□□□□ -1.66
LIMA1-214ENST00000552783 OTCP00480 354 aa4.68□□□□□ -1.66
LIMA1-214ENST00000552783 CSF3P09919 207 aa4.68□□□□□ -1.66
LIMA1-214ENST00000552783 CCNYL3P0C7X3 344 aa4.68□□□□□ -1.66
LIMA1-214ENST00000552783 CYP2A6P11509 494 aaPredicted RBP4.68□□□□□ -1.66
LIMA1-214ENST00000552783 RHOQP17081 205 aa4.68□□□□□ -1.66
LIMA1-214ENST00000552783 POLR2EP19388 210 aaKnown RBP4.68□□□□□ -1.66
LIMA1-214ENST00000552783 HLA-DPA1P20036 260 aa4.68□□□□□ -1.66
LIMA1-214ENST00000552783 HOXD9P28356 352 aaPredicted RBP4.68□□□□□ -1.66
LIMA1-214ENST00000552783 S100A3P33764 101 aa4.68□□□□□ -1.66
LIMA1-214ENST00000552783 GGT2P36268 569 aa4.68□□□□□ -1.66
LIMA1-214ENST00000552783 SLC11A2P49281 568 aa4.68□□□□□ -1.66
LIMA1-214ENST00000552783 RHOAP61586 193 aa4.68□□□□□ -1.66
LIMA1-214ENST00000552783 CDH18Q13634 790 aa4.68□□□□□ -1.66
LIMA1-214ENST00000552783 ARHGEF7Q14155 803 aa4.68□□□□□ -1.66
LIMA1-214ENST00000552783 VEPH1Q14D04 833 aa4.68□□□□□ -1.66
LIMA1-214ENST00000552783 VMACQ2NL98 169 aa4.68□□□□□ -1.66
LIMA1-214ENST00000552783 CDONQ4KMG0 1287 aa4.68□□□□□ -1.66
LIMA1-214ENST00000552783 FLYWCH1Q4VC44 716 aa4.68□□□□□ -1.66
LIMA1-214ENST00000552783 CACHD1Q5VU97 1274 aa4.68□□□□□ -1.66
LIMA1-214ENST00000552783 SDE2Q6IQ49 451 aa4.68□□□□□ -1.66
LIMA1-214ENST00000552783 C19orf48Q6RUI8 117 aa4.68□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms