RNA–Protein interactions for RNA: ENST00000520228.1

SDCBP-208, Transcript of syndecan binding protein, humanhuman

TSL 2

Gene SDCBP, Length 564 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-208ENST00000520228 ABCD3P28288 659 aa6.82□□□□□ -1.32
SDCBP-208ENST00000520228 OXTRP30559 389 aa6.82□□□□□ -1.32
SDCBP-208ENST00000520228 GGT5P36269 586 aa6.82□□□□□ -1.32
SDCBP-208ENST00000520228 SSR1P43307 286 aaKnown RBP6.82□□□□□ -1.32
SDCBP-208ENST00000520228 DHPSP49366 369 aaPredicted RBP6.82□□□□□ -1.32
SDCBP-208ENST00000520228 CENPAP49450 140 aa6.82□□□□□ -1.32
SDCBP-208ENST00000520228 RASSF2P50749 326 aa6.82□□□□□ -1.32
SDCBP-208ENST00000520228 TPI1P60174 286 aa6.82□□□□□ -1.32
SDCBP-208ENST00000520228 RPS14P62263 151 aaKnown RBP6.82□□□□□ -1.32
SDCBP-208ENST00000520228 CREB5Q02930 508 aa6.82□□□□□ -1.32
SDCBP-208ENST00000520228 SLC20A2Q08357 652 aa6.82□□□□□ -1.32
SDCBP-208ENST00000520228 DLG2Q15700 870 aa6.82□□□□□ -1.32
SDCBP-208ENST00000520228 CA9Q16790 459 aa6.82□□□□□ -1.32
SDCBP-208ENST00000520228 BOLA3Q53S33 107 aa6.82□□□□□ -1.32
SDCBP-208ENST00000520228 SPDYCQ5MJ68 293 aa6.82□□□□□ -1.32
SDCBP-208ENST00000520228 PMS2CLQ68D20 193 aa6.82□□□□□ -1.32
SDCBP-208ENST00000520228 ZNF776Q68DI1 518 aaPredicted RBP6.82□□□□□ -1.32
SDCBP-208ENST00000520228 LINGO4Q6UY18 593 aa6.82□□□□□ -1.32
SDCBP-208ENST00000520228 CACUL1Q86Y37 369 aa6.82□□□□□ -1.32
SDCBP-208ENST00000520228 MMAAQ8IVH4 418 aaKnown RBP6.82□□□□□ -1.32
SDCBP-208ENST00000520228 STK40Q8N2I9 435 aa6.82□□□□□ -1.32
SDCBP-208ENST00000520228 DEFB119Q8N690 84 aa6.82□□□□□ -1.32
SDCBP-208ENST00000520228 NIPA2Q8N8Q9 360 aa6.82□□□□□ -1.32
SDCBP-208ENST00000520228 RTL3Q8N8U3 475 aaKnown RBP6.82□□□□□ -1.32
SDCBP-208ENST00000520228 TC2NQ8N9U0 490 aa6.82□□□□□ -1.32
SDCBP-208ENST00000520228 DNAAF1Q8NEP3 725 aa6.82□□□□□ -1.32
SDCBP-208ENST00000520228 ZNF564Q8TBZ8 553 aaPredicted RBP6.82□□□□□ -1.32
SDCBP-208ENST00000520228 GANCQ8TET4 914 aa6.82□□□□□ -1.32
SDCBP-208ENST00000520228 PEBP4Q96S96 227 aa6.82□□□□□ -1.32
SDCBP-208ENST00000520228 PSMB7Q99436 277 aa6.82□□□□□ -1.32
SDCBP-208ENST00000520228 SNRNP25Q9BV90 132 aaKnown RBP6.82□□□□□ -1.32
SDCBP-208ENST00000520228 RSPH9Q9H1X1 276 aaPredicted RBP6.82□□□□□ -1.32
SDCBP-208ENST00000520228 ARRDC1-AS1Q9H2J1 176 aa6.82□□□□□ -1.32
SDCBP-208ENST00000520228 KLHL31Q9H511 634 aa6.82□□□□□ -1.32
SDCBP-208ENST00000520228 DHX35Q9H5Z1 703 aaKnown RBP6.82□□□□□ -1.32
SDCBP-208ENST00000520228 CATSPERBQ9H7T0 1116 aa6.82□□□□□ -1.32
SDCBP-208ENST00000520228 DONSONQ9NYP3 566 aa6.82□□□□□ -1.32
SDCBP-208ENST00000520228 UVRAGQ9P2Y5 699 aa6.82□□□□□ -1.32
SDCBP-208ENST00000520228 LCMT1Q9UIC8 334 aa6.82□□□□□ -1.32
SDCBP-208ENST00000520228 HPCAL4Q9UM19 191 aa6.82□□□□□ -1.32
SDCBP-208ENST00000520228 NEU3Q9UQ49 428 aa6.82□□□□□ -1.32
SDCBP-208ENST00000520228 HS3ST2Q9Y278 367 aa6.82□□□□□ -1.32
SDCBP-208ENST00000520228 PCDHGA5Q9Y5G8 931 aa6.82□□□□□ -1.32
SDCBP-208ENST00000520228 VPS13AQ96RL7 3174 aa6.82□□□□□ -1.32
SDCBP-208ENST00000520228 MYO15AQ9UKN7 3530 aa6.82□□□□□ -1.32
SDCBP-208ENST00000520228 ZNF292O60281 2723 aa6.82□□□□□ -1.32
SDCBP-208ENST00000520228 MYO16Q9Y6X6 1858 aa6.81□□□□□ -1.32
SDCBP-208ENST00000520228 MYH10P35580 1976 aa6.81□□□□□ -1.32
SDCBP-208ENST00000520228 DMDP11532 3685 aa6.81□□□□□ -1.32
SDCBP-208ENST00000520228 BCLAF3A2AJT9 711 aaKnown RBP6.81□□□□□ -1.32
SDCBP-208ENST00000520228 CBY3A6NI87 242 aa6.81□□□□□ -1.32
SDCBP-208ENST00000520228 J3KRW8 73 aa6.81□□□□□ -1.32
SDCBP-208ENST00000520228 K7ERQ8 282 aa6.81□□□□□ -1.32
SDCBP-208ENST00000520228 EEF2KO00418 725 aaKnown RBP6.81□□□□□ -1.32
SDCBP-208ENST00000520228 SMAD6O43541 496 aaKnown RBP6.81□□□□□ -1.32
SDCBP-208ENST00000520228 LRP3O75074 770 aa6.81□□□□□ -1.32
SDCBP-208ENST00000520228 ZMPSTE24O75844 475 aa6.81□□□□□ -1.32
SDCBP-208ENST00000520228 PROSCO94903 275 aa6.81□□□□□ -1.32
SDCBP-208ENST00000520228 IL1BP01584 269 aa6.81□□□□□ -1.32
SDCBP-208ENST00000520228 IGLV3-19P01714 112 aa6.81□□□□□ -1.32
SDCBP-208ENST00000520228 SRCP12931 536 aa6.81□□□□□ -1.32
SDCBP-208ENST00000520228 TCF4P15884 667 aa6.81□□□□□ -1.32
SDCBP-208ENST00000520228 PTGER1P34995 402 aa6.81□□□□□ -1.32
SDCBP-208ENST00000520228 PTGER3P43115 390 aa6.81□□□□□ -1.32
SDCBP-208ENST00000520228 PSMD8P48556 350 aa6.81□□□□□ -1.32
SDCBP-208ENST00000520228 POLD2P49005 469 aa6.81□□□□□ -1.32
SDCBP-208ENST00000520228 HCAR3P49019 387 aa6.81□□□□□ -1.32
SDCBP-208ENST00000520228 DNA2P51530 1060 aa6.81□□□□□ -1.32
SDCBP-208ENST00000520228 GEMIN4P57678 1058 aaKnown RBP6.81□□□□□ -1.32
SDCBP-208ENST00000520228 YBEYP58557 167 aaPredicted RBP6.81□□□□□ -1.32
SDCBP-208ENST00000520228 ELAVL3Q14576 367 aaKnown RBP6.81□□□□□ -1.32
SDCBP-208ENST00000520228 CST6Q15828 149 aa6.81□□□□□ -1.32
SDCBP-208ENST00000520228 CCDC6Q16204 474 aa6.81□□□□□ -1.32
SDCBP-208ENST00000520228 PARP15Q460N3 678 aa6.81□□□□□ -1.32
SDCBP-208ENST00000520228 TTC31Q49AM3 519 aaPredicted RBP6.81□□□□□ -1.32
SDCBP-208ENST00000520228 PPP6R3Q5H9R7 873 aaPredicted RBP6.81□□□□□ -1.32
SDCBP-208ENST00000520228 KCNT1Q5JUK3 1230 aa6.81□□□□□ -1.32
SDCBP-208ENST00000520228 DAB2IPQ5VWQ8 1189 aa6.81□□□□□ -1.32
SDCBP-208ENST00000520228 LYSMD4Q5XG99 296 aa6.81□□□□□ -1.32
SDCBP-208ENST00000520228 SLC22A25Q6T423 547 aa6.81□□□□□ -1.32
SDCBP-208ENST00000520228 FAM83HQ6ZRV2 1179 aaPredicted RBP6.81□□□□□ -1.32
SDCBP-208ENST00000520228 CYP4V2Q6ZWL3 525 aaPredicted RBP6.81□□□□□ -1.32
SDCBP-208ENST00000520228 DSG4Q86SJ6 1040 aa6.81□□□□□ -1.32
SDCBP-208ENST00000520228 KIAA2013Q8IYS2 634 aa6.81□□□□□ -1.32
SDCBP-208ENST00000520228 CCDC170Q8IYT3 715 aa6.81□□□□□ -1.32
SDCBP-208ENST00000520228 UMODL1-AS1Q8N2C9 162 aa6.81□□□□□ -1.32
SDCBP-208ENST00000520228 HORMAD2Q8N7B1 307 aa6.81□□□□□ -1.32
SDCBP-208ENST00000520228 OR8D1Q8WZ84 308 aa6.81□□□□□ -1.32
SDCBP-208ENST00000520228 ARHGEF2Q92974 986 aaKnown RBP6.81□□□□□ -1.32
SDCBP-208ENST00000520228 SLC25A28Q96A46 364 aa6.81□□□□□ -1.32
SDCBP-208ENST00000520228 CCDC114Q96M63 670 aa6.81□□□□□ -1.32
SDCBP-208ENST00000520228 PANX2Q96RD6 677 aa6.81□□□□□ -1.32
SDCBP-208ENST00000520228 ZWILCHQ9H900 591 aa6.81□□□□□ -1.32
SDCBP-208ENST00000520228 PREBQ9HCU5 417 aa6.81□□□□□ -1.32
SDCBP-208ENST00000520228 CD93Q9NPY3 652 aa6.81□□□□□ -1.32
SDCBP-208ENST00000520228 STAU2Q9NUL3 570 aaKnown RBP eCLIP6.81□□□□□ -1.32
SDCBP-208ENST00000520228 POT1Q9NUX5 634 aa6.81□□□□□ -1.32
SDCBP-208ENST00000520228 WSB2Q9NYS7 404 aaPredicted RBP6.81□□□□□ -1.32
SDCBP-208ENST00000520228 PEMTQ9UBM1 199 aa6.81□□□□□ -1.32
SDCBP-208ENST00000520228 SCML1Q9UN30 329 aa6.81□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms