RNA–Protein interactions for RNA: ENST00000486227.5

HDAC6-228, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 4,718 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-228ENST00000486227 DNASE1L3Q13609 305 aa10.68□□□□□ -0.7
HDAC6-228ENST00000486227 PTGR1Q14914 329 aa10.68□□□□□ -0.7
HDAC6-228ENST00000486227 USP43Q70EL4 1123 aa10.68□□□□□ -0.7
HDAC6-228ENST00000486227 TMEM173Q86WV6 379 aaPredicted RBP10.68□□□□□ -0.7
HDAC6-228ENST00000486227 GKN2Q86XP6 184 aa10.68□□□□□ -0.7
HDAC6-228ENST00000486227 DNAJB8Q8NHS0 232 aa10.68□□□□□ -0.7
HDAC6-228ENST00000486227 TRIM8Q9BZR9 551 aa10.68□□□□□ -0.7
HDAC6-228ENST00000486227 IL17CQ9P0M4 197 aa10.68□□□□□ -0.7
HDAC6-228ENST00000486227 CA14Q9ULX7 337 aa10.68□□□□□ -0.7
HDAC6-228ENST00000486227 HHLA1C9JL84 531 aa10.67□□□□□ -0.7
HDAC6-228ENST00000486227 LDB2O43679 373 aa10.67□□□□□ -0.7
HDAC6-228ENST00000486227 POU2F1P14859 743 aa10.67□□□□□ -0.7
HDAC6-228ENST00000486227 AVPR1BP47901 424 aa10.67□□□□□ -0.7
HDAC6-228ENST00000486227 PGM2L1Q6PCE3 622 aa10.67□□□□□ -0.7
HDAC6-228ENST00000486227 TMIGD1Q6UXZ0 262 aa10.67□□□□□ -0.7
HDAC6-228ENST00000486227 ZNF534Q76KX8 674 aa10.67□□□□□ -0.7
HDAC6-228ENST00000486227 PIANPQ8IYJ0 282 aa10.67□□□□□ -0.7
HDAC6-228ENST00000486227 GOLM1Q8NBJ4 401 aa10.67□□□□□ -0.7
HDAC6-228ENST00000486227 OR5AK3PQ8NH89 298 aa10.67□□□□□ -0.7
HDAC6-228ENST00000486227 NCSTNQ92542 709 aa10.67□□□□□ -0.7
HDAC6-228ENST00000486227 AP3S1Q92572 193 aa10.67□□□□□ -0.7
HDAC6-228ENST00000486227 TMBIM1Q969X1 311 aa10.67□□□□□ -0.7
HDAC6-228ENST00000486227 ZBED6CLQ96FA7 236 aaPredicted RBP10.67□□□□□ -0.7
HDAC6-228ENST00000486227 LRIG1Q96JA1 1093 aa10.67□□□□□ -0.7
HDAC6-228ENST00000486227 ZCCHC3Q9NUD5 404 aaKnown RBP10.67□□□□□ -0.7
HDAC6-228ENST00000486227 STOML2Q9UJZ1 356 aa10.67□□□□□ -0.7
HDAC6-228ENST00000486227 SSR3Q9UNL2 185 aa10.67□□□□□ -0.7
HDAC6-228ENST00000486227 PCDHGA4Q9Y5G9 962 aa10.67□□□□□ -0.7
HDAC6-228ENST00000486227 BTN3A3O00478 584 aa10.67□□□□□ -0.7
HDAC6-228ENST00000486227 HAT1O14929 419 aa10.67□□□□□ -0.7
HDAC6-228ENST00000486227 GJB3O75712 270 aa10.67□□□□□ -0.7
HDAC6-228ENST00000486227 SORBS2O94875 1100 aaKnown RBP10.67□□□□□ -0.7
HDAC6-228ENST00000486227 CD36P16671 472 aa10.67□□□□□ -0.7
HDAC6-228ENST00000486227 MYF6P23409 242 aa10.67□□□□□ -0.7
HDAC6-228ENST00000486227 MASP1P48740 699 aa10.67□□□□□ -0.7
HDAC6-228ENST00000486227 RPS13P62277 151 aaKnown RBP10.67□□□□□ -0.7
HDAC6-228ENST00000486227 SH3BP2P78314 561 aa10.67□□□□□ -0.7
HDAC6-228ENST00000486227 MEF2AQ02078 507 aaPredicted RBP10.67□□□□□ -0.7
HDAC6-228ENST00000486227 FBXO43Q4G163 708 aa10.67□□□□□ -0.7
HDAC6-228ENST00000486227 COLEC12Q5KU26 742 aa10.67□□□□□ -0.7
HDAC6-228ENST00000486227 RNF44Q7L0R7 432 aa10.67□□□□□ -0.7
HDAC6-228ENST00000486227 PRSS58Q8IYP2 241 aa10.67□□□□□ -0.7
HDAC6-228ENST00000486227 DEFB119Q8N690 84 aa10.67□□□□□ -0.7
HDAC6-228ENST00000486227 ACVR1CQ8NER5 493 aa10.67□□□□□ -0.7
HDAC6-228ENST00000486227 ARRDC2Q8TBH0 407 aa10.67□□□□□ -0.7
HDAC6-228ENST00000486227 IPCEF1Q8WWN9 437 aaPredicted RBP10.67□□□□□ -0.7
HDAC6-228ENST00000486227 SCRN2Q96FV2 425 aa10.67□□□□□ -0.7
HDAC6-228ENST00000486227 DPYSL5Q9BPU6 564 aa10.67□□□□□ -0.7
HDAC6-228ENST00000486227 SMOXQ9NWM0 555 aa10.67□□□□□ -0.7
HDAC6-228ENST00000486227 COL5A3P25940 1745 aaPredicted RBP10.67□□□□□ -0.7
HDAC6-228ENST00000486227 TCRBV21S2A2A0A5A6 115 aa10.67□□□□□ -0.7
HDAC6-228ENST00000486227 VILLO15195 856 aa10.67□□□□□ -0.7
HDAC6-228ENST00000486227 SCN2BO60939 215 aa10.67□□□□□ -0.7
HDAC6-228ENST00000486227 PRKAR1AP10644 381 aa10.67□□□□□ -0.7
HDAC6-228ENST00000486227 TCF3P15923 654 aa10.67□□□□□ -0.7
HDAC6-228ENST00000486227 ATP4BP51164 291 aa10.67□□□□□ -0.7
HDAC6-228ENST00000486227 CRTC1Q6UUV9 634 aa10.67□□□□□ -0.7
HDAC6-228ENST00000486227 ZNF248Q8NDW4 579 aa10.67□□□□□ -0.7
HDAC6-228ENST00000486227 PIK3C3Q8NEB9 887 aa10.67□□□□□ -0.7
HDAC6-228ENST00000486227 OR10Q1Q8NGQ4 319 aa10.67□□□□□ -0.7
HDAC6-228ENST00000486227 OR9A1PQ8NGU1 263 aa10.67□□□□□ -0.7
HDAC6-228ENST00000486227 TEX47Q8TBZ9 253 aa10.67□□□□□ -0.7
HDAC6-228ENST00000486227 STON2Q8WXE9 905 aa10.67□□□□□ -0.7
HDAC6-228ENST00000486227 HDAC2Q92769 488 aaKnown RBP10.67□□□□□ -0.7
HDAC6-228ENST00000486227 RAB7BQ96AH8 199 aa10.67□□□□□ -0.7
HDAC6-228ENST00000486227 RDH12Q96NR8 316 aa10.67□□□□□ -0.7
HDAC6-228ENST00000486227 IGSF5Q9NSI5 407 aa10.67□□□□□ -0.7
HDAC6-228ENST00000486227 CDH7Q9ULB5 785 aa10.67□□□□□ -0.7
HDAC6-228ENST00000486227 CYP8B1Q9UNU6 501 aa10.67□□□□□ -0.7
HDAC6-228ENST00000486227 PCDHB11Q9Y5F2 797 aa10.67□□□□□ -0.7
HDAC6-228ENST00000486227 DNAJC15Q9Y5T4 150 aa10.67□□□□□ -0.7
HDAC6-228ENST00000486227 C9J4A7 227 aa10.67□□□□□ -0.7
HDAC6-228ENST00000486227 AP1G1O43747 822 aa10.67□□□□□ -0.7
HDAC6-228ENST00000486227 RASAL1O95294 804 aa10.67□□□□□ -0.7
HDAC6-228ENST00000486227 RPLP0P05388 317 aaKnown RBP10.67□□□□□ -0.7
HDAC6-228ENST00000486227 SPINT3P49223 89 aa10.67□□□□□ -0.7
HDAC6-228ENST00000486227 RGS8P57771 180 aaPredicted RBP10.67□□□□□ -0.7
HDAC6-228ENST00000486227 MLLT1Q03111 559 aaPredicted RBP10.67□□□□□ -0.7
HDAC6-228ENST00000486227 PTSQ03393 145 aa10.67□□□□□ -0.7
HDAC6-228ENST00000486227 ELAVL3Q14576 367 aaKnown RBP10.67□□□□□ -0.7
HDAC6-228ENST00000486227 SLC9A5Q14940 896 aa10.67□□□□□ -0.7
HDAC6-228ENST00000486227 NPTX1Q15818 432 aa10.67□□□□□ -0.7
HDAC6-228ENST00000486227 IFI44LQ53G44 452 aa10.67□□□□□ -0.7
HDAC6-228ENST00000486227 SPIN4Q56A73 249 aa10.67□□□□□ -0.7
HDAC6-228ENST00000486227 CDC73Q6P1J9 531 aa10.67□□□□□ -0.7
HDAC6-228ENST00000486227 MZT2AQ6P582 158 aa10.67□□□□□ -0.7
HDAC6-228ENST00000486227 DCDC5Q6ZRR9 648 aa10.67□□□□□ -0.7
HDAC6-228ENST00000486227 HDDC2Q7Z4H3 204 aa10.67□□□□□ -0.7
HDAC6-228ENST00000486227 NUDT13Q86X67 352 aa10.67□□□□□ -0.7
HDAC6-228ENST00000486227 LRRC17Q8N6Y2 441 aa10.67□□□□□ -0.7
HDAC6-228ENST00000486227 KDM1BQ8NB78 822 aa10.67□□□□□ -0.7
HDAC6-228ENST00000486227 WDR36Q8NI36 951 aaKnown RBP10.67□□□□□ -0.7
HDAC6-228ENST00000486227 LMX1AQ8TE12 382 aa10.67□□□□□ -0.7
HDAC6-228ENST00000486227 AURKBQ96GD4 344 aaPredicted RBP10.67□□□□□ -0.7
HDAC6-228ENST00000486227 LRCH3Q96II8 777 aa10.67□□□□□ -0.7
HDAC6-228ENST00000486227 NELL2Q99435 816 aa10.67□□□□□ -0.7
HDAC6-228ENST00000486227 CHCHD6Q9BRQ6 235 aa10.67□□□□□ -0.7
HDAC6-228ENST00000486227 SLC46A2Q9BY10 475 aa10.67□□□□□ -0.7
HDAC6-228ENST00000486227 DCSTAMPQ9H295 470 aa10.67□□□□□ -0.7
HDAC6-228ENST00000486227 IL26Q9NPH9 171 aa10.67□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms