RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 ADCK2Q7Z695 626 aa11.56□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 ANKRD37Q7Z713 158 aa11.56□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 SLC26A11Q86WA9 606 aa11.56□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 IGDCC3Q8IVU1 814 aa11.56□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 CAMKVQ8NCB2 501 aa11.56□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 OR56A3Q8NH54 315 aa11.56□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 SLCO2A1Q92959 643 aa11.56□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 NAP1L3Q99457 506 aaPredicted RBP11.56□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 IARS2Q9NSE4 1012 aaKnown RBP11.56□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 MAD1L1Q9Y6D9 718 aa11.56□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 ADGRG4Q8IZF6 3080 aa11.56□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 CSMD2Q7Z408 3487 aa11.55□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 OTOGQ6ZRI0 2925 aa11.55□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 IGHV3-20A0A0C4DH32 117 aa11.55□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 FEZF1A0PJY2 475 aa11.55□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 SGK494L7N484 410 aa11.55□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 PGRMC1O00264 195 aaKnown RBP11.55□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 CES2O00748 559 aa11.55□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 PRAMEF2O60811 474 aa11.55□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 TTC4O95801 387 aa11.55□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 F10P00742 488 aa11.55□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 IL1RNP18510 177 aa11.55□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 IL10P22301 178 aa11.55□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 CCND1P24385 295 aa11.55□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 DHX9Q08211 1270 aaKnown RBP11.55□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 NAE1Q13564 534 aa11.55□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 ABHD17BQ5VST6 288 aa11.55□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 SP5Q6BEB4 398 aaPredicted RBP11.55□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 CAPN13Q6MZZ7 669 aaPredicted RBP11.55□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 STRA8Q7Z7C7 330 aa11.55□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 ASPGQ86U10 573 aa11.55□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 FJX1Q86VR8 437 aa11.55□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 C17orf64Q86WR6 236 aa11.55□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 MFSD9Q8NBP5 474 aa11.55□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 MDS2Q8NDY4 140 aa11.55□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 M1APQ8TC57 530 aa11.55□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 SLC13A3Q8WWT9 602 aa11.55□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 METTL21AQ8WXB1 218 aa11.55□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 PDLIM5Q96HC4 596 aaKnown RBP11.55□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 OR4K3Q96R72 315 aa11.55□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 OSBPL9Q96SU4 736 aa11.55□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 NDNQ99608 321 aa11.55□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 ATG10Q9H0Y0 220 aa11.55□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 MMP25Q9NPA2 562 aa11.55□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 ABCF3Q9NUQ8 709 aa11.55□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 TAS2R13Q9NYV9 303 aa11.55□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 TRMT6Q9UJA5 497 aaKnown RBP11.55□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 TACC2O95359 2948 aa11.55□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 CACNA1CQ13936 2221 aa11.55□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 DNALI1O14645 258 aaPredicted RBP11.54□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 DNAJB6O75190 326 aa11.54□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 BANF1O75531 89 aa11.54□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 SEC24DO94855 1032 aaPredicted RBP11.54□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 RASAL1O95294 804 aa11.54□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 CRYABP02511 175 aaKnown RBP11.54□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 CDH1P12830 882 aa11.54□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 PRF1P14222 555 aa11.54□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 RGS4P49798 205 aa11.54□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 AGTR2P50052 363 aa11.54□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 ART3Q13508 389 aa11.54□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 SPANXN3Q5MJ09 141 aa11.54□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 ACER2Q5QJU3 275 aa11.54□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 TEDDM1Q5T9Z0 273 aa11.54□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 DUPD1Q68J44 220 aa11.54□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 GRK7Q8WTQ7 553 aa11.54□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 ITLN2Q8WWU7 325 aaPredicted RBP11.54□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 MOCOSQ96EN8 888 aa11.54□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 ZNF354BQ96LW1 612 aa11.54□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 OR1F2PQ96R84 312 aa11.54□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 HAUS8Q9BT25 410 aa11.54□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 NAT9Q9BTE0 207 aa11.54□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP11.54□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 ANKHQ9HCJ1 492 aa11.54□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 HCN3Q9P1Z3 774 aa11.54□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 C19orf25Q9UFG5 118 aaPredicted RBP11.54□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 NAALAD2Q9Y3Q0 740 aa11.54□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 TEP1Q99973 2627 aaKnown RBP11.53□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 ASPDHA6ND91 283 aa11.53□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 MAGEB17A8MXT2 336 aa11.53□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 CDK2AP1O14519 115 aa11.53□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 TP73O15350 636 aa11.53□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 HNRNPRO43390 633 aaKnown RBP11.53□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 MAN1A2O60476 641 aa11.53□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 GALR3O60755 368 aaPredicted RBP11.53□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 RDH16O75452 317 aa11.53□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 SMIM10L1P0DMW3 83 aa11.53□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 CD96P40200 585 aa11.53□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 CA7P43166 264 aa11.53□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 PGGT1BP53609 377 aa11.53□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 AP1S2P56377 157 aa11.53□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 SRSF11Q05519 484 aaKnown RBP11.53□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 ZNF33BQ06732 778 aa11.53□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 CBLBQ13191 982 aa11.53□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 PWP1Q13610 501 aa11.53□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 TUBA3CQ13748 450 aa11.53□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 HERC3Q15034 1050 aa11.53□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 EXT1Q16394 746 aa11.53□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 ZNF800Q2TB10 664 aaPredicted RBP eCLIP11.53□□□□□ -0.563e-10■□□□□ 10.2
MSH5-SAPCD1-205ENST00000476085 BTBD16Q32M84 506 aa11.53□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 MINDY4Q4G0A6 757 aa11.53□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms