RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 GSN-AS1Q9NRJ2 163 aa2.58□□□□□ -2
CCDC88A-212ENST00000474059 MUTYHQ9UIF7 546 aa2.58□□□□□ -2
CCDC88A-212ENST00000474059 PPP1R3CQ9UQK1 317 aa2.58□□□□□ -2
CCDC88A-212ENST00000474059 ZFP37Q9Y6Q3 630 aaPredicted RBP2.58□□□□□ -2
CCDC88A-212ENST00000474059 C2orf81A6NN90 581 aa2.57□□□□□ -2
CCDC88A-212ENST00000474059 H0YAE9 185 aa2.57□□□□□ -2
CCDC88A-212ENST00000474059 PHOX2AO14813 284 aa2.57□□□□□ -2
CCDC88A-212ENST00000474059 PSMA7O14818 248 aa2.57□□□□□ -2
CCDC88A-212ENST00000474059 IFIT3O14879 490 aaKnown RBP2.57□□□□□ -2
CCDC88A-212ENST00000474059 SNX3O60493 162 aa2.57□□□□□ -2
CCDC88A-212ENST00000474059 MAGEC1O60732 1142 aa2.57□□□□□ -2
CCDC88A-212ENST00000474059 PRAF2O60831 178 aa2.57□□□□□ -2
CCDC88A-212ENST00000474059 FCGR3BO75015 233 aa2.57□□□□□ -2
CCDC88A-212ENST00000474059 RPS6KA5O75582 802 aa2.57□□□□□ -2
CCDC88A-212ENST00000474059 DDHD2O94830 711 aa2.57□□□□□ -2
CCDC88A-212ENST00000474059 LUC7L3O95232 432 aaKnown RBP2.57□□□□□ -2
CCDC88A-212ENST00000474059 PGLSO95336 258 aa2.57□□□□□ -2
CCDC88A-212ENST00000474059 HPRP00739 348 aa2.57□□□□□ -2
CCDC88A-212ENST00000474059 IGHV4-31P0DP07 118 aa2.57□□□□□ -2
CCDC88A-212ENST00000474059 SPP1P10451 314 aa2.57□□□□□ -2
CCDC88A-212ENST00000474059 MYL6BP14649 208 aa2.57□□□□□ -2
CCDC88A-212ENST00000474059 PSMB4P28070 264 aa2.57□□□□□ -2
CCDC88A-212ENST00000474059 TIA1P31483 386 aaKnown RBP eCLIP2.57□□□□□ -2
CCDC88A-212ENST00000474059 CSTF2P33240 577 aaKnown RBP eCLIP2.57□□□□□ -2
CCDC88A-212ENST00000474059 CTNNA1P35221 906 aaKnown RBP2.57□□□□□ -2
CCDC88A-212ENST00000474059 TCF7P36402 384 aaPredicted RBP2.57□□□□□ -2
CCDC88A-212ENST00000474059 OPRL1P41146 370 aa2.57□□□□□ -2
CCDC88A-212ENST00000474059 RPL21P46778 160 aaKnown RBP2.57□□□□□ -2
CCDC88A-212ENST00000474059 KCNJ1P48048 391 aa2.57□□□□□ -2
CCDC88A-212ENST00000474059 VAMP7P51809 220 aa2.57□□□□□ -2
CCDC88A-212ENST00000474059 PAX9P55771 341 aa2.57□□□□□ -2
CCDC88A-212ENST00000474059 MAZP56270 477 aaKnown RBP2.57□□□□□ -2
CCDC88A-212ENST00000474059 GCNT1Q02742 428 aa2.57□□□□□ -2
CCDC88A-212ENST00000474059 KLC1Q07866 573 aa2.57□□□□□ -2
CCDC88A-212ENST00000474059 RASGEF1BQ0VAM2 473 aa2.57□□□□□ -2
CCDC88A-212ENST00000474059 ILF2Q12905 390 aaKnown RBP2.57□□□□□ -2
CCDC88A-212ENST00000474059 NFE2L1Q14494 772 aa2.57□□□□□ -2
CCDC88A-212ENST00000474059 NONOQ15233 471 aaKnown RBP eCLIP2.57□□□□□ -2
CCDC88A-212ENST00000474059 PHKG1Q16816 387 aa2.57□□□□□ -2
CCDC88A-212ENST00000474059 MTHFSDQ2M296 383 aaKnown RBP2.57□□□□□ -2
CCDC88A-212ENST00000474059 FAM174BQ3ZCQ3 159 aa2.57□□□□□ -2
CCDC88A-212ENST00000474059 C20orf194Q5TEA3 1177 aa2.57□□□□□ -2
CCDC88A-212ENST00000474059 SUSD4Q5VX71 490 aa2.57□□□□□ -2
CCDC88A-212ENST00000474059 SEL1L3Q68CR1 1132 aa2.57□□□□□ -2
CCDC88A-212ENST00000474059 C11orf88Q6PI97 169 aa2.57□□□□□ -2
CCDC88A-212ENST00000474059 IL17RELQ6ZVW7 336 aa2.57□□□□□ -2
CCDC88A-212ENST00000474059 DZIP1Q86YF9 867 aaKnown RBP2.57□□□□□ -2
CCDC88A-212ENST00000474059 LACC1Q8IV20 430 aa2.57□□□□□ -2
CCDC88A-212ENST00000474059 APCDD1Q8J025 514 aa2.57□□□□□ -2
CCDC88A-212ENST00000474059 NDUFAF2Q8N183 169 aa2.57□□□□□ -2
CCDC88A-212ENST00000474059 NHLRC2Q8NBF2 726 aa2.57□□□□□ -2
CCDC88A-212ENST00000474059 Q8NBF4 154 aa2.57□□□□□ -2
CCDC88A-212ENST00000474059 GPRC5AQ8NFJ5 357 aa2.57□□□□□ -2
CCDC88A-212ENST00000474059 OR10Q1Q8NGQ4 319 aa2.57□□□□□ -2
CCDC88A-212ENST00000474059 OR6S1Q8NH40 331 aa2.57□□□□□ -2
CCDC88A-212ENST00000474059 GDAP1Q8TB36 358 aa2.57□□□□□ -2
CCDC88A-212ENST00000474059 ZNF519Q8TB69 540 aa2.57□□□□□ -2
CCDC88A-212ENST00000474059 DNASE1L2Q92874 299 aa2.57□□□□□ -2
CCDC88A-212ENST00000474059 SLCO2A1Q92959 643 aa2.57□□□□□ -2
CCDC88A-212ENST00000474059 AZIN2Q96A70 460 aa2.57□□□□□ -2
CCDC88A-212ENST00000474059 CYYR1Q96J86 154 aa2.57□□□□□ -2
CCDC88A-212ENST00000474059 PSMB7Q99436 277 aa2.57□□□□□ -2
CCDC88A-212ENST00000474059 PARK7Q99497 189 aaKnown RBP2.57□□□□□ -2
CCDC88A-212ENST00000474059 OR2B2Q9GZK3 357 aa2.57□□□□□ -2
CCDC88A-212ENST00000474059 ZMYND12Q9H0C1 365 aa2.57□□□□□ -2
CCDC88A-212ENST00000474059 SHARPINQ9H0F6 387 aa2.57□□□□□ -2
CCDC88A-212ENST00000474059 SNX25Q9H3E2 840 aa2.57□□□□□ -2
CCDC88A-212ENST00000474059 MINDY3Q9H8M7 445 aa2.57□□□□□ -2
CCDC88A-212ENST00000474059 COPS7BQ9H9Q2 264 aaPredicted RBP2.57□□□□□ -2
CCDC88A-212ENST00000474059 GNB4Q9HAV0 340 aa2.57□□□□□ -2
CCDC88A-212ENST00000474059 CHST11Q9NPF2 352 aa2.57□□□□□ -2
CCDC88A-212ENST00000474059 SPHK2Q9NRA0 654 aa2.57□□□□□ -2
CCDC88A-212ENST00000474059 FAM207AQ9NSI2 230 aaPredicted RBP2.57□□□□□ -2
CCDC88A-212ENST00000474059 P4HTMQ9NXG6 502 aa2.57□□□□□ -2
CCDC88A-212ENST00000474059 STUB1Q9UNE7 303 aa2.57□□□□□ -2
CCDC88A-212ENST00000474059 CELA1Q9UNI1 258 aa2.57□□□□□ -2
CCDC88A-212ENST00000474059 ANGPTL3Q9Y5C1 460 aa2.57□□□□□ -2
CCDC88A-212ENST00000474059 A4D1N5 150 aa2.56□□□□□ -2
CCDC88A-212ENST00000474059 ST8SIA3O43173 380 aa2.56□□□□□ -2
CCDC88A-212ENST00000474059 PPIP5K2O43314 1243 aa2.56□□□□□ -2
CCDC88A-212ENST00000474059 SELENOFO60613 162 aa2.56□□□□□ -2
CCDC88A-212ENST00000474059 DFFBO76075 338 aa2.56□□□□□ -2
CCDC88A-212ENST00000474059 SERPING1P05155 500 aa2.56□□□□□ -2
CCDC88A-212ENST00000474059 SUPT20HL2P0C7V6 817 aa2.56□□□□□ -2
CCDC88A-212ENST00000474059 FOLR2P14207 255 aa2.56□□□□□ -2
CCDC88A-212ENST00000474059 DARSP14868 501 aaKnown RBP2.56□□□□□ -2
CCDC88A-212ENST00000474059 CDX1P47902 265 aaPredicted RBP2.56□□□□□ -2
CCDC88A-212ENST00000474059 YWHAHQ04917 246 aaPredicted RBP2.56□□□□□ -2
CCDC88A-212ENST00000474059 SQLEQ14534 574 aa2.56□□□□□ -2
CCDC88A-212ENST00000474059 HERC3Q15034 1050 aa2.56□□□□□ -2
CCDC88A-212ENST00000474059 MEP1BQ16820 701 aa2.56□□□□□ -2
CCDC88A-212ENST00000474059 CDO1Q16878 200 aa2.56□□□□□ -2
CCDC88A-212ENST00000474059 TWISTNBQ3B726 338 aaPredicted RBP2.56□□□□□ -2
CCDC88A-212ENST00000474059 SLC35D3Q5M8T2 416 aa2.56□□□□□ -2
CCDC88A-212ENST00000474059 TXNRD3NBQ6F5E7 133 aa2.56□□□□□ -2
CCDC88A-212ENST00000474059 OR4A47Q6IF82 309 aa2.56□□□□□ -2
CCDC88A-212ENST00000474059 NOTUMQ6P988 496 aa2.56□□□□□ -2
CCDC88A-212ENST00000474059 CYB5D1Q6P9G0 228 aa2.56□□□□□ -2
CCDC88A-212ENST00000474059 GBP6Q6ZN66 633 aa2.56□□□□□ -2
CCDC88A-212ENST00000474059 OTOAQ7RTW8 1153 aa2.56□□□□□ -2
Retrieved 100 of 20,778 RNA–protein pairs in 56.9 ms