RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 FAM189BP81408 668 aa10.33□□□□□ -0.76
USP54-204ENST00000422491 SMARCB1Q12824 385 aa10.33□□□□□ -0.76
USP54-204ENST00000422491 MTAPQ13126 283 aa10.33□□□□□ -0.76
USP54-204ENST00000422491 VEZF1Q14119 521 aa10.33□□□□□ -0.76
USP54-204ENST00000422491 VEPH1Q14D04 833 aa10.33□□□□□ -0.76
USP54-204ENST00000422491 ZNF800Q2TB10 664 aaPredicted RBP eCLIP10.33□□□□□ -0.76
USP54-204ENST00000422491 ZRANB3Q5FWF4 1079 aa10.33□□□□□ -0.76
USP54-204ENST00000422491 ZNF648Q5T619 568 aaPredicted RBP10.33□□□□□ -0.76
USP54-204ENST00000422491 SYNPOQ8N3V7 929 aa10.33□□□□□ -0.76
USP54-204ENST00000422491 ZNF557Q8N988 423 aaPredicted RBP10.33□□□□□ -0.76
USP54-204ENST00000422491 NLGN4YQ8NFZ3 816 aaPredicted RBP10.33□□□□□ -0.76
USP54-204ENST00000422491 UTP15Q8TED0 518 aaKnown RBP10.33□□□□□ -0.76
USP54-204ENST00000422491 NELL1Q92832 810 aa10.33□□□□□ -0.76
USP54-204ENST00000422491 SPATA17Q96L03 361 aa10.33□□□□□ -0.76
USP54-204ENST00000422491 MIXL1Q9H2W2 232 aa10.33□□□□□ -0.76
USP54-204ENST00000422491 EXOSC4Q9NPD3 245 aaKnown RBP10.33□□□□□ -0.76
USP54-204ENST00000422491 SNTG1Q9NSN8 517 aa10.33□□□□□ -0.76
USP54-204ENST00000422491 DUSP12Q9UNI6 340 aa10.33□□□□□ -0.76
USP54-204ENST00000422491 POFUT2Q9Y2G5 429 aa10.33□□□□□ -0.76
USP54-204ENST00000422491 FADS2P1A8MWK0 482 aa10.33□□□□□ -0.76
USP54-204ENST00000422491 ZNF670-ZNF695F2Z2N8 137 aa10.33□□□□□ -0.76
USP54-204ENST00000422491 TSPAN3O60637 253 aa10.33□□□□□ -0.76
USP54-204ENST00000422491 TRIM3O75382 744 aaPredicted RBP10.33□□□□□ -0.76
USP54-204ENST00000422491 OR2B3O76000 313 aa10.33□□□□□ -0.76
USP54-204ENST00000422491 LRATO95237 230 aa10.33□□□□□ -0.76
USP54-204ENST00000422491 THP07101 528 aa10.33□□□□□ -0.76
USP54-204ENST00000422491 SMPD1P17405 629 aa10.33□□□□□ -0.76
USP54-204ENST00000422491 CRYBB2P43320 205 aa10.33□□□□□ -0.76
USP54-204ENST00000422491 RGRP47804 291 aa10.33□□□□□ -0.76
USP54-204ENST00000422491 SNRPD2P62316 118 aaKnown RBP10.33□□□□□ -0.76
USP54-204ENST00000422491 CACNB2Q08289 660 aaPredicted RBP10.33□□□□□ -0.76
USP54-204ENST00000422491 DMC1Q14565 340 aa10.33□□□□□ -0.76
USP54-204ENST00000422491 DUOXA1Q1HG43 343 aa10.33□□□□□ -0.76
USP54-204ENST00000422491 BTBD16Q32M84 506 aa10.33□□□□□ -0.76
USP54-204ENST00000422491 ZNF792Q3KQV3 632 aa10.33□□□□□ -0.76
USP54-204ENST00000422491 TOR2AQ5JU69 321 aa10.33□□□□□ -0.76
USP54-204ENST00000422491 FAM131AQ6UXB0 335 aa10.33□□□□□ -0.76
USP54-204ENST00000422491 OR4C15Q8NGM1 316 aa10.33□□□□□ -0.76
USP54-204ENST00000422491 WDR36Q8NI36 951 aaKnown RBP10.33□□□□□ -0.76
USP54-204ENST00000422491 MCOLN1Q9GZU1 580 aa10.33□□□□□ -0.76
USP54-204ENST00000422491 TMEM245Q9H330 911 aa10.33□□□□□ -0.76
USP54-204ENST00000422491 BPIFA1Q9NP55 256 aa10.33□□□□□ -0.76
USP54-204ENST00000422491 IMPAD1Q9NX62 359 aa10.33□□□□□ -0.76
USP54-204ENST00000422491 NDUFAF4Q9P032 175 aa10.33□□□□□ -0.76
USP54-204ENST00000422491 FNDC3AQ9Y2H6 1198 aaKnown RBP10.33□□□□□ -0.76
USP54-204ENST00000422491 LSM2Q9Y333 95 aaKnown RBP10.33□□□□□ -0.76
USP54-204ENST00000422491 DRGXA6NNA5 263 aa10.32□□□□□ -0.76
USP54-204ENST00000422491 FPGTO14772 594 aa10.32□□□□□ -0.76
USP54-204ENST00000422491 SCN2BO60939 215 aa10.32□□□□□ -0.76
USP54-204ENST00000422491 ARHGEF15O94989 841 aa10.32□□□□□ -0.76
USP54-204ENST00000422491 EPN2O95208 641 aa10.32□□□□□ -0.76
USP54-204ENST00000422491 PDYNP01213 254 aa10.32□□□□□ -0.76
USP54-204ENST00000422491 FHP07954 510 aa10.32□□□□□ -0.76
USP54-204ENST00000422491 ACADMP11310 421 aa10.32□□□□□ -0.76
USP54-204ENST00000422491 ODC1P11926 461 aa10.32□□□□□ -0.76
USP54-204ENST00000422491 IFI30P13284 250 aa10.32□□□□□ -0.76
USP54-204ENST00000422491 ANXA8P13928 327 aa10.32□□□□□ -0.76
USP54-204ENST00000422491 ITGB7P26010 798 aa10.32□□□□□ -0.76
USP54-204ENST00000422491 SOX3P41225 446 aa10.32□□□□□ -0.76
USP54-204ENST00000422491 KIR3DL1P43629 444 aa10.32□□□□□ -0.76
USP54-204ENST00000422491 ABRQ12979 859 aa10.32□□□□□ -0.76
USP54-204ENST00000422491 LARS2Q15031 903 aaKnown RBP10.32□□□□□ -0.76
USP54-204ENST00000422491 QPRTQ15274 297 aa10.32□□□□□ -0.76
USP54-204ENST00000422491 GPR19Q15760 415 aa10.32□□□□□ -0.76
USP54-204ENST00000422491 UPP1Q16831 310 aa10.32□□□□□ -0.76
USP54-204ENST00000422491 TATDN3Q17R31 274 aa10.32□□□□□ -0.76
USP54-204ENST00000422491 PLAG1Q6DJT9 500 aa10.32□□□□□ -0.76
USP54-204ENST00000422491 FAAH2Q6GMR7 532 aa10.32□□□□□ -0.76
USP54-204ENST00000422491 NADSYN1Q6IA69 706 aa10.32□□□□□ -0.76
USP54-204ENST00000422491 GDPGP1Q6ZNW5 385 aa10.32□□□□□ -0.76
USP54-204ENST00000422491 GDPD1Q8N9F7 314 aa10.32□□□□□ -0.76
USP54-204ENST00000422491 UBTD2Q8WUN7 234 aa10.32□□□□□ -0.76
USP54-204ENST00000422491 MYEOVQ96EZ4 313 aa10.32□□□□□ -0.76
USP54-204ENST00000422491 C8orf48Q96LL4 319 aa10.32□□□□□ -0.76
USP54-204ENST00000422491 PANX1Q96RD7 426 aa10.32□□□□□ -0.76
USP54-204ENST00000422491 EGFL8Q99944 293 aa10.32□□□□□ -0.76
USP54-204ENST00000422491 GTPBP2Q9BX10 602 aaKnown RBP10.32□□□□□ -0.76
USP54-204ENST00000422491 ABCB9Q9NP78 766 aa10.32□□□□□ -0.76
USP54-204ENST00000422491 CDKN2AIPQ9NXV6 580 aaPredicted RBP10.32□□□□□ -0.76
USP54-204ENST00000422491 WWOXQ9NZC7 414 aa10.32□□□□□ -0.76
USP54-204ENST00000422491 PPP2R3BQ9Y5P8 575 aa10.32□□□□□ -0.76
USP54-204ENST00000422491 OTOFQ9HC10 1997 aa10.32□□□□□ -0.76
USP54-204ENST00000422491 SH3D21A4FU49 640 aa10.32□□□□□ -0.76
USP54-204ENST00000422491 OR5K3A6NET4 321 aa10.32□□□□□ -0.76
USP54-204ENST00000422491 ADAMDEC1O15204 470 aa10.32□□□□□ -0.76
USP54-204ENST00000422491 CYP17A1P05093 508 aa10.32□□□□□ -0.76
USP54-204ENST00000422491 OR1E1P30953 314 aa10.32□□□□□ -0.76
USP54-204ENST00000422491 CSTF2P33240 577 aaKnown RBP eCLIP10.32□□□□□ -0.76
USP54-204ENST00000422491 WNT3P56703 355 aa10.32□□□□□ -0.76
USP54-204ENST00000422491 YBEYP58557 167 aaPredicted RBP10.32□□□□□ -0.76
USP54-204ENST00000422491 RHAGQ02094 409 aa10.32□□□□□ -0.76
USP54-204ENST00000422491 HSPA14Q0VDF9 509 aa10.32□□□□□ -0.76
USP54-204ENST00000422491 PAN2Q504Q3 1202 aaKnown RBP10.32□□□□□ -0.76
USP54-204ENST00000422491 DLK2Q6UY11 383 aa10.32□□□□□ -0.76
USP54-204ENST00000422491 AMIGO1Q86WK6 493 aa10.32□□□□□ -0.76
USP54-204ENST00000422491 FBXL6Q8N531 539 aa10.32□□□□□ -0.76
USP54-204ENST00000422491 OR4M2Q8NGB6 313 aa10.32□□□□□ -0.76
USP54-204ENST00000422491 ULK4Q96C45 1275 aa10.32□□□□□ -0.76
USP54-204ENST00000422491 SLC29A3Q9BZD2 475 aa10.32□□□□□ -0.76
USP54-204ENST00000422491 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP10.32□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms