RNA–Protein interactions for RNA: ENST00000381150.5

SDC1-202, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 5 BASIC

Gene SDC1, Length 3,291 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-202ENST00000381150 TMCO6Q96DC7 493 aa13.4□□□□□ -0.26
SDC1-202ENST00000381150 ASPNQ9BXN1 380 aa13.4□□□□□ -0.26
SDC1-202ENST00000381150 STARD7Q9NQZ5 370 aa13.4□□□□□ -0.26
SDC1-202ENST00000381150 SLC38A8A6NNN8 435 aa13.39□□□□□ -0.27
SDC1-202ENST00000381150 AP2A2O94973 939 aa13.39□□□□□ -0.27
SDC1-202ENST00000381150 OTCP00480 354 aa13.39□□□□□ -0.27
SDC1-202ENST00000381150 TSPAN19P0C672 248 aa13.39□□□□□ -0.27
SDC1-202ENST00000381150 ADORA3P0DMS8 318 aa13.39□□□□□ -0.27
SDC1-202ENST00000381150 FPR1P21462 350 aa13.39□□□□□ -0.27
SDC1-202ENST00000381150 MYL9P24844 172 aa13.39□□□□□ -0.27
SDC1-202ENST00000381150 TACR1P25103 407 aa13.39□□□□□ -0.27
SDC1-202ENST00000381150 HOXA9P31269 272 aa13.39□□□□□ -0.27
SDC1-202ENST00000381150 SUOXP51687 545 aa13.39□□□□□ -0.27
SDC1-202ENST00000381150 CSTF3Q12996 717 aaKnown RBP13.39□□□□□ -0.27
SDC1-202ENST00000381150 TUBA3EQ6PEY2 450 aa13.39□□□□□ -0.27
SDC1-202ENST00000381150 SLC34A3Q8N130 599 aa13.39□□□□□ -0.27
SDC1-202ENST00000381150 BRSK1Q8TDC3 778 aa13.39□□□□□ -0.27
SDC1-202ENST00000381150 IPCEF1Q8WWN9 437 aaPredicted RBP13.39□□□□□ -0.27
SDC1-202ENST00000381150 MGLLQ99685 303 aa13.39□□□□□ -0.27
SDC1-202ENST00000381150 BCL7BQ9BQE9 202 aa13.39□□□□□ -0.27
SDC1-202ENST00000381150 LOC730098B7Z3J9 87 aa13.39□□□□□ -0.27
SDC1-202ENST00000381150 AREL1O15033 823 aa13.39□□□□□ -0.27
SDC1-202ENST00000381150 ITGAMP11215 1152 aa13.39□□□□□ -0.27
SDC1-202ENST00000381150 ATF4P18848 351 aaPredicted RBP13.39□□□□□ -0.27
SDC1-202ENST00000381150 HLA-DPA1P20036 260 aa13.39□□□□□ -0.27
SDC1-202ENST00000381150 OR3A3P47888 321 aa13.39□□□□□ -0.27
SDC1-202ENST00000381150 CDH12P55289 794 aa13.39□□□□□ -0.27
SDC1-202ENST00000381150 HOXC5Q00444 222 aa13.39□□□□□ -0.27
SDC1-202ENST00000381150 CHRNEQ04844 493 aa13.39□□□□□ -0.27
SDC1-202ENST00000381150 PRKCDQ05655 676 aa13.39□□□□□ -0.27
SDC1-202ENST00000381150 PRSS55Q6UWB4 352 aaPredicted RBP13.39□□□□□ -0.27
SDC1-202ENST00000381150 GPR65Q8IYL9 337 aa13.39□□□□□ -0.27
SDC1-202ENST00000381150 SELENOMQ8WWX9 145 aa13.39□□□□□ -0.27
SDC1-202ENST00000381150 DEDD2Q8WXF8 326 aa13.39□□□□□ -0.27
SDC1-202ENST00000381150 MED30Q96HR3 178 aa13.39□□□□□ -0.27
SDC1-202ENST00000381150 SMAD5Q99717 465 aaKnown RBP13.39□□□□□ -0.27
SDC1-202ENST00000381150 MGME1Q9BQP7 344 aa13.39□□□□□ -0.27
SDC1-202ENST00000381150 DNMT3LQ9UJW3 386 aa13.39□□□□□ -0.27
SDC1-202ENST00000381150 RIMKLBQ9ULI2 386 aa13.39□□□□□ -0.27
SDC1-202ENST00000381150 SLC6A14Q9UN76 642 aa13.39□□□□□ -0.27
SDC1-202ENST00000381150 DLGAP4Q9Y2H0 992 aa13.39□□□□□ -0.27
SDC1-202ENST00000381150 GBF1Q92538 1859 aa13.38□□□□□ -0.27
SDC1-202ENST00000381150 A8MUA0 341 aa13.38□□□□□ -0.27
SDC1-202ENST00000381150 TSPAN9O75954 239 aa13.38□□□□□ -0.27
SDC1-202ENST00000381150 FGF1P05230 155 aa13.38□□□□□ -0.27
SDC1-202ENST00000381150 JUNDP17535 347 aa13.38□□□□□ -0.27
SDC1-202ENST00000381150 SEMG2Q02383 582 aa13.38□□□□□ -0.27
SDC1-202ENST00000381150 GPAT3Q53EU6 434 aa13.38□□□□□ -0.27
SDC1-202ENST00000381150 SETMARQ53H47 684 aaPredicted RBP13.38□□□□□ -0.27
SDC1-202ENST00000381150 FAAH2Q6GMR7 532 aa13.38□□□□□ -0.27
SDC1-202ENST00000381150 CAPN13Q6MZZ7 669 aaPredicted RBP13.38□□□□□ -0.27
SDC1-202ENST00000381150 SLC46A3Q7Z3Q1 461 aa13.38□□□□□ -0.27
SDC1-202ENST00000381150 RHCGQ9UBD6 479 aa13.38□□□□□ -0.27
SDC1-202ENST00000381150 PCM1Q15154 2024 aa13.38□□□□□ -0.27
SDC1-202ENST00000381150 C2orf81A6NN90 581 aa13.38□□□□□ -0.27
SDC1-202ENST00000381150 ARNTLO00327 626 aa13.38□□□□□ -0.27
SDC1-202ENST00000381150 ACSL4O60488 711 aa13.38□□□□□ -0.27
SDC1-202ENST00000381150 NUDT7P0C024 238 aa13.38□□□□□ -0.27
SDC1-202ENST00000381150 BCKDHAP12694 445 aa13.38□□□□□ -0.27
SDC1-202ENST00000381150 ENGP17813 658 aa13.38□□□□□ -0.27
SDC1-202ENST00000381150 RGRP47804 291 aa13.38□□□□□ -0.27
SDC1-202ENST00000381150 CCL23P55773 120 aa13.38□□□□□ -0.27
SDC1-202ENST00000381150 GANABQ14697 944 aaKnown RBP13.38□□□□□ -0.27
SDC1-202ENST00000381150 C10orf62Q5T681 223 aaPredicted RBP13.38□□□□□ -0.27
SDC1-202ENST00000381150 SLX4IPQ5VYV7 408 aa13.38□□□□□ -0.27
SDC1-202ENST00000381150 KDM4DQ6B0I6 523 aa13.38□□□□□ -0.27
SDC1-202ENST00000381150 EIF3MQ7L2H7 374 aaKnown RBP13.38□□□□□ -0.27
SDC1-202ENST00000381150 SNX20Q7Z614 316 aa13.38□□□□□ -0.27
SDC1-202ENST00000381150 YIPF7Q8N8F6 280 aa13.38□□□□□ -0.27
SDC1-202ENST00000381150 CD99L2Q8TCZ2 262 aa13.38□□□□□ -0.27
SDC1-202ENST00000381150 PXYLP1Q8TE99 480 aa13.38□□□□□ -0.27
SDC1-202ENST00000381150 CHAC2Q8WUX2 184 aa13.38□□□□□ -0.27
SDC1-202ENST00000381150 OR2A14Q96R47 310 aa13.38□□□□□ -0.27
SDC1-202ENST00000381150 ZNF382Q96SR6 550 aa13.38□□□□□ -0.27
SDC1-202ENST00000381150 SMURF1Q9HCE7 757 aa13.38□□□□□ -0.27
SDC1-202ENST00000381150 MED16Q9Y2X0 877 aa13.38□□□□□ -0.27
SDC1-202ENST00000381150 ANKRD36A6QL64 1941 aa13.38□□□□□ -0.27
SDC1-202ENST00000381150 LOC101059915A0A1B0GWI6 518 aaPredicted RBP13.38□□□□□ -0.27
SDC1-202ENST00000381150 TSPAN4O14817 238 aa13.38□□□□□ -0.27
SDC1-202ENST00000381150 FFAR2O15552 330 aa13.38□□□□□ -0.27
SDC1-202ENST00000381150 PSIP1O75475 530 aaKnown RBP13.38□□□□□ -0.27
SDC1-202ENST00000381150 GJB5O95377 273 aa13.38□□□□□ -0.27
SDC1-202ENST00000381150 PRLP01236 227 aa13.38□□□□□ -0.27
SDC1-202ENST00000381150 KLKB1P03952 638 aa13.38□□□□□ -0.27
SDC1-202ENST00000381150 IL6P05231 212 aa13.38□□□□□ -0.27
SDC1-202ENST00000381150 CR2P20023 1033 aa13.38□□□□□ -0.27
SDC1-202ENST00000381150 PSMA3P25788 255 aa13.38□□□□□ -0.27
SDC1-202ENST00000381150 FCHO2Q0JRZ9 810 aa13.38□□□□□ -0.27
SDC1-202ENST00000381150 KEAP1Q14145 624 aa13.38□□□□□ -0.27
SDC1-202ENST00000381150 PLET1Q6UQ28 207 aa13.38□□□□□ -0.27
SDC1-202ENST00000381150 LINC00299Q6ZSB3 139 aa13.38□□□□□ -0.27
SDC1-202ENST00000381150 ZNF557Q8N988 423 aaPredicted RBP13.38□□□□□ -0.27
SDC1-202ENST00000381150 OR7D4Q8NG98 312 aa13.38□□□□□ -0.27
SDC1-202ENST00000381150 C2orf15Q8WU43 125 aaKnown RBP13.38□□□□□ -0.27
SDC1-202ENST00000381150 APH1BQ8WW43 257 aa13.38□□□□□ -0.27
SDC1-202ENST00000381150 MAGEH1Q9H213 219 aa13.38□□□□□ -0.27
SDC1-202ENST00000381150 TM9SF3Q9HD45 589 aa13.38□□□□□ -0.27
SDC1-202ENST00000381150 HEBP1Q9NRV9 189 aa13.38□□□□□ -0.27
SDC1-202ENST00000381150 RLIMQ9NVW2 624 aa13.38□□□□□ -0.27
SDC1-202ENST00000381150 CRNNQ9UBG3 495 aaPredicted RBP13.38□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms