RNA–Protein interactions for RNA: ENST00000377861.4

PCDH9-201, Transcript of protocadherin 9, humanhuman

TSL 1 (best) BASIC

Gene PCDH9, Length 28,227 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9-201ENST00000377861 IFNA6P05013 189 aa4.78□□□□□ -1.64
PCDH9-201ENST00000377861 NEDD8Q15843 81 aa4.78□□□□□ -1.64
PCDH9-201ENST00000377861 SPESP1Q6UW49 350 aa4.78□□□□□ -1.64
PCDH9-201ENST00000377861 NT5C1B-RDH14C9J2C7 533 aa4.78□□□□□ -1.64
PCDH9-201ENST00000377861 SELPP16109 830 aa4.78□□□□□ -1.64
PCDH9-201ENST00000377861 OXA1LQ15070 435 aa4.78□□□□□ -1.64
PCDH9-201ENST00000377861 FAM26EQ8N5C1 309 aa4.78□□□□□ -1.64
PCDH9-201ENST00000377861 TRAM1L1Q8N609 369 aa4.78□□□□□ -1.64
PCDH9-201ENST00000377861 ATAD1Q8NBU5 361 aa4.78□□□□□ -1.64
PCDH9-201ENST00000377861 MAN1C1Q9NR34 630 aa4.78□□□□□ -1.64
PCDH9-201ENST00000377861 SYNJ2BP-COX16A0A087WUM0 186 aa4.78□□□□□ -1.64
PCDH9-201ENST00000377861 ST3GAL4Q11206 333 aa4.78□□□□□ -1.64
PCDH9-201ENST00000377861 COX16Q9P0S2 106 aa4.78□□□□□ -1.64
PCDH9-201ENST00000377861 FAM50BQ9Y247 325 aa4.78□□□□□ -1.64
PCDH9-201ENST00000377861 SDHDO14521 159 aa4.78□□□□□ -1.64
PCDH9-201ENST00000377861 CSNK2A2P19784 350 aaPredicted RBP4.78□□□□□ -1.64
PCDH9-201ENST00000377861 HTR3AP46098 478 aa4.78□□□□□ -1.64
PCDH9-201ENST00000377861 CDK5R2Q13319 367 aa4.78□□□□□ -1.64
PCDH9-201ENST00000377861 PCLAFQ15004 111 aa4.78□□□□□ -1.64
PCDH9-201ENST00000377861 PAN2Q504Q3 1202 aaKnown RBP4.78□□□□□ -1.64
PCDH9-201ENST00000377861 NKAPLQ5M9Q1 402 aa4.78□□□□□ -1.64
PCDH9-201ENST00000377861 ESRP1Q6NXG1 681 aaKnown RBP4.78□□□□□ -1.64
PCDH9-201ENST00000377861 DACT3Q96B18 629 aaPredicted RBP4.78□□□□□ -1.64
PCDH9-201ENST00000377861 SLC6A14Q9UN76 642 aa4.78□□□□□ -1.64
PCDH9-201ENST00000377861 SLC2A2P11168 524 aaPredicted RBP4.78□□□□□ -1.64
PCDH9-201ENST00000377861 TGM4P49221 684 aa4.78□□□□□ -1.64
PCDH9-201ENST00000377861 KHKP50053 298 aa4.78□□□□□ -1.64
PCDH9-201ENST00000377861 CYBRD1Q53TN4 286 aa4.78□□□□□ -1.64
PCDH9-201ENST00000377861 FCAMRQ8WWV6 532 aa4.78□□□□□ -1.64
PCDH9-201ENST00000377861 CD180Q99467 661 aa4.78□□□□□ -1.64
PCDH9-201ENST00000377861 EXOSC4Q9NPD3 245 aaKnown RBP4.78□□□□□ -1.64
PCDH9-201ENST00000377861 H3BM21 787 aa4.78□□□□□ -1.64
PCDH9-201ENST00000377861 HTR2AP28223 471 aa4.78□□□□□ -1.64
PCDH9-201ENST00000377861 TEAD1P28347 426 aa4.78□□□□□ -1.64
PCDH9-201ENST00000377861 THPOP40225 353 aa4.78□□□□□ -1.64
PCDH9-201ENST00000377861 GRB14Q14449 540 aa4.78□□□□□ -1.64
PCDH9-201ENST00000377861 PPA1Q15181 289 aa4.78□□□□□ -1.64
PCDH9-201ENST00000377861 NBPF12Q5TAG4 269 aaPredicted RBP4.78□□□□□ -1.64
PCDH9-201ENST00000377861 SLC39A4Q6P5W5 647 aa4.78□□□□□ -1.64
PCDH9-201ENST00000377861 DEF8Q6ZN54 512 aa4.78□□□□□ -1.64
PCDH9-201ENST00000377861 HTR3DQ70Z44 454 aa4.78□□□□□ -1.64
PCDH9-201ENST00000377861 MUTYHQ9UIF7 546 aa4.78□□□□□ -1.64
PCDH9-201ENST00000377861 BPNT1O95861 308 aa4.78□□□□□ -1.64
PCDH9-201ENST00000377861 GALK2Q01415 458 aa4.78□□□□□ -1.64
PCDH9-201ENST00000377861 CRB2Q5IJ48 1285 aa4.78□□□□□ -1.64
PCDH9-201ENST00000377861 FAM171A1Q5VUB5 890 aa4.78□□□□□ -1.64
PCDH9-201ENST00000377861 OR6V1Q8N148 313 aa4.78□□□□□ -1.64
PCDH9-201ENST00000377861 FBXL8Q96CD0 374 aa4.78□□□□□ -1.64
PCDH9-201ENST00000377861 FGF9P31371 208 aaPredicted RBP4.78□□□□□ -1.64
PCDH9-201ENST00000377861 FAM214AQ32MH5 1076 aa4.78□□□□□ -1.64
PCDH9-201ENST00000377861 FAM205BPQ63HN1 556 aa4.78□□□□□ -1.64
PCDH9-201ENST00000377861 PHPT1Q9NRX4 125 aaPredicted RBP4.78□□□□□ -1.64
PCDH9-201ENST00000377861 EPHA6Q9UF33 1036 aa4.78□□□□□ -1.64
PCDH9-201ENST00000377861 CPNE6O95741 557 aa4.78□□□□□ -1.64
PCDH9-201ENST00000377861 GKN3PP0CG01 181 aa4.78□□□□□ -1.64
PCDH9-201ENST00000377861 S100A12P80511 92 aa4.78□□□□□ -1.64
PCDH9-201ENST00000377861 SHC2P98077 582 aa4.78□□□□□ -1.64
PCDH9-201ENST00000377861 DDX39BQ13838 428 aaKnown RBP4.78□□□□□ -1.64
PCDH9-201ENST00000377861 TAF1CQ15572 869 aaPredicted RBP4.78□□□□□ -1.64
PCDH9-201ENST00000377861 PYDC2Q56P42 97 aa4.78□□□□□ -1.64
PCDH9-201ENST00000377861 C12orf43Q96C57 262 aaKnown RBP4.78□□□□□ -1.64
PCDH9-201ENST00000377861 SNTG1Q9NSN8 517 aa4.78□□□□□ -1.64
PCDH9-201ENST00000377861 FANCGO15287 622 aa4.78□□□□□ -1.64
PCDH9-201ENST00000377861 OR6B1O95007 311 aa4.78□□□□□ -1.64
PCDH9-201ENST00000377861 MLLT3P42568 568 aaPredicted RBP4.78□□□□□ -1.64
PCDH9-201ENST00000377861 OR52N2Q8NGI0 321 aa4.78□□□□□ -1.64
PCDH9-201ENST00000377861 TBATAQ96M53 351 aa4.78□□□□□ -1.64
PCDH9-201ENST00000377861 ZDHHC2Q9UIJ5 367 aa4.78□□□□□ -1.64
PCDH9-201ENST00000377861 MOKQ9UQ07 419 aa4.78□□□□□ -1.64
PCDH9-201ENST00000377861 FAM47E-STBD1D6RA91 191 aa4.78□□□□□ -1.64
PCDH9-201ENST00000377861 USP2O75604 605 aaPredicted RBP4.78□□□□□ -1.64
PCDH9-201ENST00000377861 MAP3K6O95382 1288 aa4.78□□□□□ -1.64
PCDH9-201ENST00000377861 CHRNGP07510 517 aa4.78□□□□□ -1.64
PCDH9-201ENST00000377861 JUPP14923 745 aa4.78□□□□□ -1.64
PCDH9-201ENST00000377861 CD247P20963 164 aa4.78□□□□□ -1.64
PCDH9-201ENST00000377861 GDPD4Q6W3E5 623 aa4.78□□□□□ -1.64
PCDH9-201ENST00000377861 GNPDA2Q8TDQ7 276 aa4.78□□□□□ -1.64
PCDH9-201ENST00000377861 RFT1Q96AA3 541 aa4.78□□□□□ -1.64
PCDH9-201ENST00000377861 COQ8BQ96D53 544 aa4.78□□□□□ -1.64
PCDH9-201ENST00000377861 RBPJLQ9UBG7 517 aa4.78□□□□□ -1.64
PCDH9-201ENST00000377861 TFR2Q9UP52 801 aa4.78□□□□□ -1.64
PCDH9-201ENST00000377861 CEPT1Q9Y6K0 416 aa4.78□□□□□ -1.64
PCDH9-201ENST00000377861 GADD45GO95257 159 aa4.78□□□□□ -1.64
PCDH9-201ENST00000377861 HOXA9P31269 272 aa4.78□□□□□ -1.64
PCDH9-201ENST00000377861 AQP4P55087 323 aa4.78□□□□□ -1.64
PCDH9-201ENST00000377861 RPS7P62081 194 aaKnown RBP4.78□□□□□ -1.64
PCDH9-201ENST00000377861 UBE2UQ5VVX9 321 aa4.78□□□□□ -1.64
PCDH9-201ENST00000377861 OR2T33Q8NG76 320 aa4.78□□□□□ -1.64
PCDH9-201ENST00000377861 LRTOMTQ8WZ04 291 aa4.78□□□□□ -1.64
PCDH9-201ENST00000377861 MUS81Q96NY9 551 aa4.78□□□□□ -1.64
PCDH9-201ENST00000377861 GDE1Q9NZC3 331 aa4.78□□□□□ -1.64
PCDH9-201ENST00000377861 NKX1-2Q9UD57 310 aaPredicted RBP4.78□□□□□ -1.64
PCDH9-201ENST00000377861 LALBAP00709 142 aa4.78□□□□□ -1.64
PCDH9-201ENST00000377861 RGS6P49758 472 aa4.78□□□□□ -1.64
PCDH9-201ENST00000377861 NXPE1Q8N323 547 aa4.78□□□□□ -1.64
PCDH9-201ENST00000377861 THSD1Q9NS62 852 aa4.78□□□□□ -1.64
PCDH9-201ENST00000377861 OSER1Q9NX31 292 aa4.78□□□□□ -1.64
PCDH9-201ENST00000377861 ATG4BQ9Y4P1 393 aa4.78□□□□□ -1.64
PCDH9-201ENST00000377861 STK25O00506 426 aa4.78□□□□□ -1.64
PCDH9-201ENST00000377861 KLHL18O94889 574 aa4.78□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms