RNA–Protein interactions for RNA: ENST00000263274.11

LIG1-201, Transcript of DNA ligase 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIG1, Length 3,384 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-201ENST00000263274 EPHB3P54753 998 aa12.21□□□□□ -0.45
LIG1-201ENST00000263274 SRSF11Q05519 484 aaKnown RBP12.21□□□□□ -0.45
LIG1-201ENST00000263274 DOC2AQ14183 400 aa12.21□□□□□ -0.45
LIG1-201ENST00000263274 LYPLAL1Q5VWZ2 237 aa12.21□□□□□ -0.45
LIG1-201ENST00000263274 ENTHD1Q8IYW4 607 aa12.21□□□□□ -0.45
LIG1-201ENST00000263274 AMER2Q8N7J2 671 aa12.21□□□□□ -0.45
LIG1-201ENST00000263274 OR10G2Q8NGC3 310 aa12.21□□□□□ -0.45
LIG1-201ENST00000263274 OR9Q2Q8NGE9 314 aa12.21□□□□□ -0.45
LIG1-201ENST00000263274 TMEM159Q96B96 161 aa12.21□□□□□ -0.45
LIG1-201ENST00000263274 IL4I1Q96RQ9 567 aa12.21□□□□□ -0.45
LIG1-201ENST00000263274 ACAT2Q9BWD1 397 aa12.21□□□□□ -0.45
LIG1-201ENST00000263274 SUV39H2Q9H5I1 410 aa12.21□□□□□ -0.45
LIG1-201ENST00000263274 RLIMQ9NVW2 624 aa12.21□□□□□ -0.45
LIG1-201ENST00000263274 TANC1Q9C0D5 1861 aa12.21□□□□□ -0.46
LIG1-201ENST00000263274 TRBV5-3A0A0A0MS03 114 aa12.21□□□□□ -0.46
LIG1-201ENST00000263274 PCDH7O60245 1069 aa12.21□□□□□ -0.46
LIG1-201ENST00000263274 TGFB1P01137 390 aa12.21□□□□□ -0.46
LIG1-201ENST00000263274 HOXA9P31269 272 aa12.21□□□□□ -0.46
LIG1-201ENST00000263274 BDKRB1P46663 353 aa12.21□□□□□ -0.46
LIG1-201ENST00000263274 CCSMST1Q4G0I0 132 aa12.21□□□□□ -0.46
LIG1-201ENST00000263274 LRIF1Q5T3J3 769 aa12.21□□□□□ -0.46
LIG1-201ENST00000263274 DPY19L3Q6ZPD9 716 aa12.21□□□□□ -0.46
LIG1-201ENST00000263274 TPRG1Q6ZUI0 275 aa12.21□□□□□ -0.46
LIG1-201ENST00000263274 EIF3MQ7L2H7 374 aaKnown RBP12.21□□□□□ -0.46
LIG1-201ENST00000263274 ARMC8Q8IUR7 673 aa12.21□□□□□ -0.46
LIG1-201ENST00000263274 DYNC2LI1Q8TCX1 351 aa12.21□□□□□ -0.46
LIG1-201ENST00000263274 CEP295NLQ96MC4 621 aa12.21□□□□□ -0.46
LIG1-201ENST00000263274 NUAK2Q9H093 628 aa12.21□□□□□ -0.46
LIG1-201ENST00000263274 FNDC1Q4ZHG4 1894 aaPredicted RBP12.2□□□□□ -0.46
LIG1-201ENST00000263274 GABRR3A8MPY1 467 aa12.2□□□□□ -0.46
LIG1-201ENST00000263274 J3KTA2 159 aa12.2□□□□□ -0.46
LIG1-201ENST00000263274 YY2O15391 372 aa12.2□□□□□ -0.46
LIG1-201ENST00000263274 TLL1O43897 1013 aa12.2□□□□□ -0.46
LIG1-201ENST00000263274 ALOX5P09917 674 aa12.2□□□□□ -0.46
LIG1-201ENST00000263274 AZGP1P25311 298 aaKnown RBP12.2□□□□□ -0.46
LIG1-201ENST00000263274 CD40LGP29965 261 aa12.2□□□□□ -0.46
LIG1-201ENST00000263274 B4GALNT1Q00973 533 aa12.2□□□□□ -0.46
LIG1-201ENST00000263274 ELP6Q0PNE2 266 aa12.2□□□□□ -0.46
LIG1-201ENST00000263274 CSTF3Q12996 717 aaKnown RBP12.2□□□□□ -0.46
LIG1-201ENST00000263274 ARMCX4Q5H9R4 360 aa12.2□□□□□ -0.46
LIG1-201ENST00000263274 TPRG1LQ5T0D9 272 aa12.2□□□□□ -0.46
LIG1-201ENST00000263274 VASH1Q7L8A9 365 aaPredicted RBP12.2□□□□□ -0.46
LIG1-201ENST00000263274 LRRC70Q7Z2Q7 622 aa12.2□□□□□ -0.46
LIG1-201ENST00000263274 THOC6Q86W42 341 aaKnown RBP12.2□□□□□ -0.46
LIG1-201ENST00000263274 LGI4Q8N135 537 aa12.2□□□□□ -0.46
LIG1-201ENST00000263274 CACTIN-AS1Q8N1I8 211 aa12.2□□□□□ -0.46
LIG1-201ENST00000263274 MRPS31Q92665 395 aaKnown RBP12.2□□□□□ -0.46
LIG1-201ENST00000263274 SLC38A4Q969I6 547 aa12.2□□□□□ -0.46
LIG1-201ENST00000263274 ZNF300Q96RE9 604 aaPredicted RBP12.2□□□□□ -0.46
LIG1-201ENST00000263274 MTG2Q9H4K7 406 aa12.2□□□□□ -0.46
LIG1-201ENST00000263274 TRIM39Q9HCM9 518 aa12.2□□□□□ -0.46
LIG1-201ENST00000263274 C14orf119Q9NWQ9 140 aa12.2□□□□□ -0.46
LIG1-201ENST00000263274 PCDHGB3Q9Y5G1 929 aa12.2□□□□□ -0.46
LIG1-201ENST00000263274 ATP1B2P14415 290 aaPredicted RBP12.2□□□□□ -0.46
LIG1-201ENST00000263274 LHCGRP22888 699 aa12.2□□□□□ -0.46
LIG1-201ENST00000263274 MC1RQ01726 317 aa12.2□□□□□ -0.46
LIG1-201ENST00000263274 ST3GAL4Q11206 333 aa12.2□□□□□ -0.46
LIG1-201ENST00000263274 NOGQ13253 232 aa12.2□□□□□ -0.46
LIG1-201ENST00000263274 FAM26DQ5JW98 314 aa12.2□□□□□ -0.46
LIG1-201ENST00000263274 SYT6Q5T7P8 510 aaPredicted RBP12.2□□□□□ -0.46
LIG1-201ENST00000263274 PRSS48Q7RTY5 328 aa12.2□□□□□ -0.46
LIG1-201ENST00000263274 CCDC71Q8IV32 467 aaPredicted RBP12.2□□□□□ -0.46
LIG1-201ENST00000263274 CHPFQ8IZ52 775 aa12.2□□□□□ -0.46
LIG1-201ENST00000263274 CHST14Q8NCH0 376 aa12.2□□□□□ -0.46
LIG1-201ENST00000263274 C11orf65Q8NCR3 313 aa12.2□□□□□ -0.46
LIG1-201ENST00000263274 ERVK-11Q9UQG0 969 aa12.2□□□□□ -0.46
LIG1-201ENST00000263274 TMEM202A6NGA9 273 aa12.19□□□□□ -0.46
LIG1-201ENST00000263274 NOTOA8MTQ0 251 aa12.19□□□□□ -0.46
LIG1-201ENST00000263274 ZNF197O14709 1029 aa12.19□□□□□ -0.46
LIG1-201ENST00000263274 GZMMP51124 257 aa12.19□□□□□ -0.46
LIG1-201ENST00000263274 RSBN1Q5VWQ0 802 aaPredicted RBP12.19□□□□□ -0.46
LIG1-201ENST00000263274 ERICH5Q6P6B1 374 aa12.19□□□□□ -0.46
LIG1-201ENST00000263274 ZNF852Q6ZMS4 543 aa12.19□□□□□ -0.46
LIG1-201ENST00000263274 SPATC1Q76KD6 591 aa12.19□□□□□ -0.46
LIG1-201ENST00000263274 PTOV1Q86YD1 416 aa12.19□□□□□ -0.46
LIG1-201ENST00000263274 NFKBIDQ8NI38 313 aa12.19□□□□□ -0.46
LIG1-201ENST00000263274 MYDGFQ969H8 173 aa12.19□□□□□ -0.46
LIG1-201ENST00000263274 YIPF6Q96EC8 236 aa12.19□□□□□ -0.46
LIG1-201ENST00000263274 SLC12A9Q9BXP2 914 aa12.19□□□□□ -0.46
LIG1-201ENST00000263274 OR51B5Q9H339 312 aa12.19□□□□□ -0.46
LIG1-201ENST00000263274 TMEM184CQ9NVA4 438 aa12.19□□□□□ -0.46
LIG1-201ENST00000263274 MICAL3Q7RTP6 2002 aa12.19□□□□□ -0.46
LIG1-201ENST00000263274 A0A1W2PQ45 241 aaPredicted RBP12.19□□□□□ -0.46
LIG1-201ENST00000263274 A0A1W2PQY0 241 aa12.19□□□□□ -0.46
LIG1-201ENST00000263274 TRIM64BA6NI03 449 aa12.19□□□□□ -0.46
LIG1-201ENST00000263274 INPPL1O15357 1258 aa12.19□□□□□ -0.46
LIG1-201ENST00000263274 ASNA1O43681 348 aa12.19□□□□□ -0.46
LIG1-201ENST00000263274 WBP4O75554 376 aaKnown RBP12.19□□□□□ -0.46
LIG1-201ENST00000263274 C8GP07360 202 aa12.19□□□□□ -0.46
LIG1-201ENST00000263274 NR4A2P43354 598 aa12.19□□□□□ -0.46
LIG1-201ENST00000263274 PPP5CP53041 499 aa12.19□□□□□ -0.46
LIG1-201ENST00000263274 RPS13P62277 151 aaKnown RBP12.19□□□□□ -0.46
LIG1-201ENST00000263274 PTSQ03393 145 aa12.19□□□□□ -0.46
LIG1-201ENST00000263274 KEAP1Q14145 624 aa12.19□□□□□ -0.46
LIG1-201ENST00000263274 MFSD4AQ8N468 514 aa12.19□□□□□ -0.46
LIG1-201ENST00000263274 RHOXF1Q8NHV9 184 aa12.19□□□□□ -0.46
LIG1-201ENST00000263274 ZNF675Q8TD23 568 aa12.19□□□□□ -0.46
LIG1-201ENST00000263274 C2orf15Q8WU43 125 aaKnown RBP12.19□□□□□ -0.46
LIG1-201ENST00000263274 VPS35Q96QK1 796 aa12.19□□□□□ -0.46
LIG1-201ENST00000263274 ZNF334Q9HCZ1 680 aaPredicted RBP12.19□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms