RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 NLE1Q9NVX2 485 aaPredicted RBP13.88□□□□□ -0.19
SDC1-201ENST00000254351 SNX7Q9UNH6 387 aa13.88□□□□□ -0.19
SDC1-201ENST00000254351 CFAP20Q9Y6A4 193 aaKnown RBP13.88□□□□□ -0.19
SDC1-201ENST00000254351 V9GYH0 126 aa13.88□□□□□ -0.19
SDC1-201ENST00000254351 A0A1W2PQL4 384 aaPredicted RBP13.87□□□□□ -0.19
SDC1-201ENST00000254351 PLD2O14939 933 aa13.87□□□□□ -0.19
SDC1-201ENST00000254351 PSIP1O75475 530 aaKnown RBP13.87□□□□□ -0.19
SDC1-201ENST00000254351 OR2B3O76000 313 aa13.87□□□□□ -0.19
SDC1-201ENST00000254351 KIR2DL3P43628 341 aa13.87□□□□□ -0.19
SDC1-201ENST00000254351 FAPQ12884 760 aa13.87□□□□□ -0.19
SDC1-201ENST00000254351 HYAL2Q12891 473 aa13.87□□□□□ -0.19
SDC1-201ENST00000254351 PPIGQ13427 754 aaKnown RBP eCLIP13.87□□□□□ -0.19
SDC1-201ENST00000254351 ZNF267Q14586 743 aaPredicted RBP13.87□□□□□ -0.19
SDC1-201ENST00000254351 EXOC3L2Q2M3D2 409 aa13.87□□□□□ -0.19
SDC1-201ENST00000254351 FLYWCH1Q4VC44 716 aa13.87□□□□□ -0.19
SDC1-201ENST00000254351 AFMIDQ63HM1 303 aa13.87□□□□□ -0.19
SDC1-201ENST00000254351 FAAH2Q6GMR7 532 aa13.87□□□□□ -0.19
SDC1-201ENST00000254351 PTCHD4Q6ZW05 846 aa13.87□□□□□ -0.19
SDC1-201ENST00000254351 METTL23Q86XA0 190 aa13.87□□□□□ -0.19
SDC1-201ENST00000254351 OR8H3Q8N146 312 aa13.87□□□□□ -0.19
SDC1-201ENST00000254351 OR4M1Q8NGD0 313 aa13.87□□□□□ -0.19
SDC1-201ENST00000254351 FCGR1BQ92637 280 aa13.87□□□□□ -0.19
SDC1-201ENST00000254351 MTERF1Q99551 399 aaKnown RBP13.87□□□□□ -0.19
SDC1-201ENST00000254351 CRISPLD1Q9H336 500 aa13.87□□□□□ -0.19
SDC1-201ENST00000254351 CDCP1Q9H5V8 836 aa13.87□□□□□ -0.19
SDC1-201ENST00000254351 SLC23A1Q9UHI7 598 aa13.87□□□□□ -0.19
SDC1-201ENST00000254351 B4DXG7 233 aa13.87□□□□□ -0.19
SDC1-201ENST00000254351 CDK2AP1O14519 115 aa13.87□□□□□ -0.19
SDC1-201ENST00000254351 PCDH17O14917 1159 aa13.87□□□□□ -0.19
SDC1-201ENST00000254351 SUV39H1O43463 412 aa13.87□□□□□ -0.19
SDC1-201ENST00000254351 GBAP04062 536 aa13.87□□□□□ -0.19
SDC1-201ENST00000254351 COX7A2P14406 83 aa13.87□□□□□ -0.19
SDC1-201ENST00000254351 RHOQP17081 205 aa13.87□□□□□ -0.19
SDC1-201ENST00000254351 ATF4P18848 351 aaPredicted RBP13.87□□□□□ -0.19
SDC1-201ENST00000254351 TIE1P35590 1138 aa13.87□□□□□ -0.19
SDC1-201ENST00000254351 PBX3P40426 434 aa13.87□□□□□ -0.19
SDC1-201ENST00000254351 CRATP43155 626 aa13.87□□□□□ -0.19
SDC1-201ENST00000254351 KIR3DL1P43629 444 aa13.87□□□□□ -0.19
SDC1-201ENST00000254351 KCNQ1P51787 676 aa13.87□□□□□ -0.19
SDC1-201ENST00000254351 RPS24P62847 133 aaKnown RBP13.87□□□□□ -0.19
SDC1-201ENST00000254351 SCN1BQ07699 218 aa13.87□□□□□ -0.19
SDC1-201ENST00000254351 CSTF3Q12996 717 aaKnown RBP13.87□□□□□ -0.19
SDC1-201ENST00000254351 C16orf59Q7L2K0 433 aa13.87□□□□□ -0.19
SDC1-201ENST00000254351 GALNT7Q86SF2 657 aa13.87□□□□□ -0.19
SDC1-201ENST00000254351 CALHM3Q86XJ0 350 aa13.87□□□□□ -0.19
SDC1-201ENST00000254351 LGI4Q8N135 537 aa13.87□□□□□ -0.19
SDC1-201ENST00000254351 KCNH6Q9H252 994 aa13.87□□□□□ -0.19
SDC1-201ENST00000254351 OLA1Q9NTK5 396 aaKnown RBP13.87□□□□□ -0.19
SDC1-201ENST00000254351 CCDC59Q9P031 241 aaKnown RBP13.87□□□□□ -0.19
SDC1-201ENST00000254351 PRSS21Q9Y6M0 314 aa13.87□□□□□ -0.19
SDC1-201ENST00000254351 NT5C1B-RDH14C9J2C7 533 aa13.86□□□□□ -0.19
SDC1-201ENST00000254351 TSPAN4O14817 238 aa13.86□□□□□ -0.19
SDC1-201ENST00000254351 KPNA5O15131 536 aa13.86□□□□□ -0.19
SDC1-201ENST00000254351 KLK8O60259 260 aa13.86□□□□□ -0.19
SDC1-201ENST00000254351 EPN2O95208 641 aa13.86□□□□□ -0.19
SDC1-201ENST00000254351 EPB42P16452 691 aa13.86□□□□□ -0.19
SDC1-201ENST00000254351 SDC1P18827 310 aa13.86□□□□□ -0.19
SDC1-201ENST00000254351 LPOP22079 712 aaPredicted RBP13.86□□□□□ -0.19
SDC1-201ENST00000254351 APEX1P27695 318 aaKnown RBP13.86□□□□□ -0.19
SDC1-201ENST00000254351 GPC1P35052 558 aa13.86□□□□□ -0.19
SDC1-201ENST00000254351 GGT2P36268 569 aa13.86□□□□□ -0.19
SDC1-201ENST00000254351 MAGEA2P43356 314 aa13.86□□□□□ -0.19
SDC1-201ENST00000254351 SERINC3Q13530 473 aa13.86□□□□□ -0.19
SDC1-201ENST00000254351 NFE2Q16621 373 aaPredicted RBP13.86□□□□□ -0.19
SDC1-201ENST00000254351 C22orf42Q6IC83 251 aa13.86□□□□□ -0.19
SDC1-201ENST00000254351 FAM124AQ86V42 546 aa13.86□□□□□ -0.19
SDC1-201ENST00000254351 BBS7Q8IWZ6 715 aa13.86□□□□□ -0.19
SDC1-201ENST00000254351 CELF5Q8N6W0 485 aaKnown RBP13.86□□□□□ -0.19
SDC1-201ENST00000254351 ATP6V1C2Q8NEY4 427 aa13.86□□□□□ -0.19
SDC1-201ENST00000254351 TCF25Q9BQ70 676 aa13.86□□□□□ -0.19
SDC1-201ENST00000254351 ATG10Q9H0Y0 220 aa13.86□□□□□ -0.19
SDC1-201ENST00000254351 MCUBQ9NWR8 336 aa13.86□□□□□ -0.19
SDC1-201ENST00000254351 PCDHB9Q9Y5E1 797 aa13.86□□□□□ -0.19
SDC1-201ENST00000254351 A0A1B0GVC2 190 aa13.86□□□□□ -0.19
SDC1-201ENST00000254351 A6NIN4 97 aa13.86□□□□□ -0.19
SDC1-201ENST00000254351 BNIP3LO60238 219 aa13.86□□□□□ -0.19
SDC1-201ENST00000254351 SNAI1O95863 264 aaPredicted RBP13.86□□□□□ -0.19
SDC1-201ENST00000254351 HOXC13P31276 330 aa13.86□□□□□ -0.19
SDC1-201ENST00000254351 TTPAP49638 278 aa13.86□□□□□ -0.19
SDC1-201ENST00000254351 QPRTQ15274 297 aa13.86□□□□□ -0.19
SDC1-201ENST00000254351 CST9Q5W186 159 aa13.86□□□□□ -0.19
SDC1-201ENST00000254351 PLET1Q6UQ28 207 aa13.86□□□□□ -0.19
SDC1-201ENST00000254351 SYT12Q8IV01 421 aa13.86□□□□□ -0.19
SDC1-201ENST00000254351 ZZZ3Q8IYH5 903 aa13.86□□□□□ -0.19
SDC1-201ENST00000254351 ZFP41Q8N8Y5 198 aa13.86□□□□□ -0.19
SDC1-201ENST00000254351 SYT14Q8NB59 555 aa13.86□□□□□ -0.19
SDC1-201ENST00000254351 ATAD1Q8NBU5 361 aa13.86□□□□□ -0.19
SDC1-201ENST00000254351 ZSCAN5AQ9BUG6 496 aa13.86□□□□□ -0.19
SDC1-201ENST00000254351 NXF2Q9GZY0 626 aaKnown RBP13.86□□□□□ -0.19
SDC1-201ENST00000254351 SLC22A4Q9H015 551 aa13.86□□□□□ -0.19
SDC1-201ENST00000254351 TLR8Q9NR97 1041 aaKnown RBP13.86□□□□□ -0.19
SDC1-201ENST00000254351 EVA1BQ9NVM1 165 aa13.86□□□□□ -0.19
SDC1-201ENST00000254351 HSPE1-MOB4S4R3N1 261 aa13.86□□□□□ -0.19
SDC1-201ENST00000254351 ZNF236Q9UL36 1845 aa13.86□□□□□ -0.19
SDC1-201ENST00000254351 TRBV5-3A0A0A0MS03 114 aa13.86□□□□□ -0.19
SDC1-201ENST00000254351 LOC102723532A0A0G2JNH3 316 aa13.86□□□□□ -0.19
SDC1-201ENST00000254351 YY2O15391 372 aa13.86□□□□□ -0.19
SDC1-201ENST00000254351 SRCP12931 536 aa13.86□□□□□ -0.19
SDC1-201ENST00000254351 RPS3P23396 243 aaKnown RBP eCLIP13.86□□□□□ -0.195e-11■■■■□ 21
SDC1-201ENST00000254351 ACVR1Q04771 509 aa13.86□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms