RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 BTBD10Q9BSF8 475 aa8.91□□□□□ -0.98
VPS39-205ENST00000562258 DUSP23Q9BVJ7 150 aa8.91□□□□□ -0.98
VPS39-205ENST00000562258 ANKMY1Q9P2S6 941 aa8.91□□□□□ -0.98
VPS39-205ENST00000562258 FETUBQ9UGM5 382 aa8.91□□□□□ -0.98
VPS39-205ENST00000562258 FZD4Q9ULV1 537 aa8.91□□□□□ -0.98
VPS39-205ENST00000562258 MAPRE3Q9UPY8 281 aa8.91□□□□□ -0.98
VPS39-205ENST00000562258 A0A0A6YYC8 382 aaPredicted RBP8.91□□□□□ -0.98
VPS39-205ENST00000562258 I3L1I5 382 aaPredicted RBP8.91□□□□□ -0.98
VPS39-205ENST00000562258 SLC25A12O75746 678 aa8.91□□□□□ -0.98
VPS39-205ENST00000562258 IL6P05231 212 aa8.91□□□□□ -0.98
VPS39-205ENST00000562258 FHP07954 510 aa8.91□□□□□ -0.98
VPS39-205ENST00000562258 SERPINA6P08185 405 aa8.91□□□□□ -0.98
VPS39-205ENST00000562258 PRPS2P11908 318 aa8.91□□□□□ -0.98
VPS39-205ENST00000562258 ECHS1P30084 290 aa8.91□□□□□ -0.98
VPS39-205ENST00000562258 IDH3AP50213 366 aa8.91□□□□□ -0.98
VPS39-205ENST00000562258 MTPNP58546 118 aa8.91□□□□□ -0.98
VPS39-205ENST00000562258 RPS15P62841 145 aaKnown RBP8.91□□□□□ -0.98
VPS39-205ENST00000562258 SIGLEC14Q08ET2 396 aa8.91□□□□□ -0.98
VPS39-205ENST00000562258 GPR68Q15743 365 aa8.91□□□□□ -0.98
VPS39-205ENST00000562258 KCTD11Q693B1 232 aa8.91□□□□□ -0.98
VPS39-205ENST00000562258 MACC1Q6ZN28 852 aa8.91□□□□□ -0.98
VPS39-205ENST00000562258 ZSWIM9Q86XI8 627 aa8.91□□□□□ -0.98
VPS39-205ENST00000562258 OR2L2Q8NH16 312 aa8.91□□□□□ -0.98
VPS39-205ENST00000562258 OR10A6Q8NH74 314 aa8.91□□□□□ -0.98
VPS39-205ENST00000562258 ACTRT2Q8TDY3 377 aa8.91□□□□□ -0.98
VPS39-205ENST00000562258 PTCD3Q96EY7 689 aaKnown RBP8.91□□□□□ -0.98
VPS39-205ENST00000562258 SLC30A3Q99726 388 aa8.91□□□□□ -0.98
VPS39-205ENST00000562258 SIKE1Q9BRV8 207 aa8.91□□□□□ -0.98
VPS39-205ENST00000562258 LRRC3Q9BY71 257 aa8.91□□□□□ -0.98
VPS39-205ENST00000562258 KRT84Q9NSB2 600 aa8.91□□□□□ -0.98
VPS39-205ENST00000562258 ARL8BQ9NVJ2 186 aa8.91□□□□□ -0.98
VPS39-205ENST00000562258 BRCA1P38398 1863 aaKnown RBP8.91□□□□□ -0.98
VPS39-205ENST00000562258 KIR2DS5A0A0G2JLQ3 304 aa8.91□□□□□ -0.98
VPS39-205ENST00000562258 A0A0G2JNG1 304 aa8.91□□□□□ -0.98
VPS39-205ENST00000562258 A0A1W2PPC1 479 aa8.91□□□□□ -0.98
VPS39-205ENST00000562258 A0A1W2PPC4 97 aa8.91□□□□□ -0.98
VPS39-205ENST00000562258 KIR2DS3K7RE56 304 aa8.91□□□□□ -0.98
VPS39-205ENST00000562258 ALBP02768 609 aa8.91□□□□□ -0.98
VPS39-205ENST00000562258 EBLN1P0CF75 366 aa8.91□□□□□ -0.98
VPS39-205ENST00000562258 SLAMF1Q13291 335 aa8.91□□□□□ -0.98
VPS39-205ENST00000562258 LASP1Q14847 261 aaKnown RBP8.91□□□□□ -0.98
VPS39-205ENST00000562258 KIR2DS5Q14953 304 aa8.91□□□□□ -0.98
VPS39-205ENST00000562258 NSDHLQ15738 373 aa8.91□□□□□ -0.98
VPS39-205ENST00000562258 RPE65Q16518 533 aa8.91□□□□□ -0.98
VPS39-205ENST00000562258 PPP1R3AQ16821 1122 aa8.91□□□□□ -0.98
VPS39-205ENST00000562258 C3orf38Q5JPI3 329 aa8.91□□□□□ -0.98
VPS39-205ENST00000562258 VRK3Q8IV63 474 aa8.91□□□□□ -0.98
VPS39-205ENST00000562258 FBXL6Q8N531 539 aa8.91□□□□□ -0.98
VPS39-205ENST00000562258 ZNF555Q8NEP9 628 aa8.91□□□□□ -0.98
VPS39-205ENST00000562258 ZNF480Q8WV37 535 aa8.91□□□□□ -0.98
VPS39-205ENST00000562258 DNAJA3Q96EY1 480 aa8.91□□□□□ -0.98
VPS39-205ENST00000562258 CLPTM1LQ96KA5 538 aa8.91□□□□□ -0.98
VPS39-205ENST00000562258 C7orf26Q96N11 449 aa8.91□□□□□ -0.98
VPS39-205ENST00000562258 EDEM2Q9BV94 578 aa8.91□□□□□ -0.98
VPS39-205ENST00000562258 RAD21L1Q9H4I0 556 aa8.91□□□□□ -0.98
VPS39-205ENST00000562258 TM9SF3Q9HD45 589 aa8.91□□□□□ -0.98
VPS39-205ENST00000562258 ADAMTS6Q9UKP5 1117 aa8.91□□□□□ -0.98
VPS39-205ENST00000562258 SNX5Q9Y5X3 404 aa8.91□□□□□ -0.98
VPS39-205ENST00000562258 OAS3Q9Y6K5 1087 aaKnown RBP8.91□□□□□ -0.98
VPS39-205ENST00000562258 AP3D1O14617 1153 aa8.9□□□□□ -0.98
VPS39-205ENST00000562258 SHOX2O60902 331 aaPredicted RBP8.9□□□□□ -0.98
VPS39-205ENST00000562258 SERPINB7O75635 380 aa8.9□□□□□ -0.98
VPS39-205ENST00000562258 SMNDC1O75940 238 aaKnown RBP eCLIP8.9□□□□□ -0.98
VPS39-205ENST00000562258 RPLP0P05388 317 aaKnown RBP8.9□□□□□ -0.98
VPS39-205ENST00000562258 MMP2P08253 660 aa8.9□□□□□ -0.98
VPS39-205ENST00000562258 IL7RP16871 459 aa8.9□□□□□ -0.98
VPS39-205ENST00000562258 CR2P20023 1033 aa8.9□□□□□ -0.98
VPS39-205ENST00000562258 GABRB3P28472 473 aa8.9□□□□□ -0.98
VPS39-205ENST00000562258 IL12BP29460 328 aa8.9□□□□□ -0.98
VPS39-205ENST00000562258 IGFALSP35858 605 aa8.9□□□□□ -0.98
VPS39-205ENST00000562258 OR1D4P47884 311 aa8.9□□□□□ -0.98
VPS39-205ENST00000562258 SP140Q13342 867 aa8.9□□□□□ -0.98
VPS39-205ENST00000562258 WASHC2DQ5SRD0 308 aa8.9□□□□□ -0.98
VPS39-205ENST00000562258 ZBTB49Q6ZSB9 765 aa8.9□□□□□ -0.98
VPS39-205ENST00000562258 SPATA19Q7Z5L4 167 aa8.9□□□□□ -0.98
VPS39-205ENST00000562258 HMGN2P46Q86SG4 172 aa8.9□□□□□ -0.98
VPS39-205ENST00000562258 DCP2Q8IU60 420 aaKnown RBP8.9□□□□□ -0.98
VPS39-205ENST00000562258 RNF175Q8N4F7 328 aa8.9□□□□□ -0.98
VPS39-205ENST00000562258 HUS1BQ8NHY5 278 aa8.9□□□□□ -0.98
VPS39-205ENST00000562258 KAT2AQ92830 837 aa8.9□□□□□ -0.98
VPS39-205ENST00000562258 NEIL2Q969S2 332 aa8.9□□□□□ -0.98
VPS39-205ENST00000562258 TBC1D29Q9UFV1 150 aa8.9□□□□□ -0.98
VPS39-205ENST00000562258 CDV3Q9UKY7 258 aaKnown RBP8.9□□□□□ -0.98
VPS39-205ENST00000562258 UBXN7O94888 489 aa8.9□□□□□ -0.98
VPS39-205ENST00000562258 UQCRBP14927 111 aa8.9□□□□□ -0.98
VPS39-205ENST00000562258 NQO1P15559 274 aaKnown RBP8.9□□□□□ -0.98
VPS39-205ENST00000562258 LTBRP36941 435 aa8.9□□□□□ -0.98
VPS39-205ENST00000562258 SLC26A3P40879 764 aa8.9□□□□□ -0.98
VPS39-205ENST00000562258 HTR6P50406 440 aa8.9□□□□□ -0.98
VPS39-205ENST00000562258 OR1D5P58170 312 aa8.9□□□□□ -0.98
VPS39-205ENST00000562258 ESRRGP62508 458 aa8.9□□□□□ -0.98
VPS39-205ENST00000562258 SLC18A2Q05940 514 aa8.9□□□□□ -0.98
VPS39-205ENST00000562258 TUBB3Q13509 450 aa8.9□□□□□ -0.98
VPS39-205ENST00000562258 GPR18Q14330 331 aa8.9□□□□□ -0.98
VPS39-205ENST00000562258 CCSMST1Q4G0I0 132 aa8.9□□□□□ -0.98
VPS39-205ENST00000562258 CYP27C1Q4G0S4 372 aa8.9□□□□□ -0.98
VPS39-205ENST00000562258 SPANXN4Q5MJ08 99 aa8.9□□□□□ -0.98
VPS39-205ENST00000562258 STEAP4Q687X5 459 aa8.9□□□□□ -0.98
VPS39-205ENST00000562258 CAPRIN2Q6IMN6 1127 aaKnown RBP8.9□□□□□ -0.98
VPS39-205ENST00000562258 SYVN1Q86TM6 617 aa8.9□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms