RNA–Protein interactions for RNA: ENST00000543140.5

COL4A1-204, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A1, Length 2,547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-204ENST00000543140 SPIN4Q56A73 249 aa15.72■□□□□ 0.11
COL4A1-204ENST00000543140 MSANTD1Q6ZTZ1 278 aa15.72■□□□□ 0.11
COL4A1-204ENST00000543140 AMZ2Q86W34 360 aa15.72■□□□□ 0.11
COL4A1-204ENST00000543140 LRRC56Q8IYG6 542 aaPredicted RBP15.72■□□□□ 0.11
COL4A1-204ENST00000543140 SNX19Q92543 992 aa15.72■□□□□ 0.11
COL4A1-204ENST00000543140 RPP25Q9BUL9 199 aaKnown RBP15.72■□□□□ 0.11
COL4A1-204ENST00000543140 DPEP2Q9H4A9 486 aa15.72■□□□□ 0.11
COL4A1-204ENST00000543140 CCDC177Q9NQR7 707 aaPredicted RBP15.72■□□□□ 0.11
COL4A1-204ENST00000543140 FAM120CQ9NX05 1096 aaKnown RBP15.72■□□□□ 0.11
COL4A1-204ENST00000543140 CDH7Q9ULB5 785 aa15.72■□□□□ 0.11
COL4A1-204ENST00000543140 OR1A2Q9Y585 309 aa15.72■□□□□ 0.11
COL4A1-204ENST00000543140 AHCYL1O43865 530 aa15.72■□□□□ 0.11
COL4A1-204ENST00000543140 KCNK5O95279 499 aa15.72■□□□□ 0.11
COL4A1-204ENST00000543140 ABCB1P08183 1280 aaPredicted RBP15.72■□□□□ 0.11
COL4A1-204ENST00000543140 PRKACGP22612 351 aa15.72■□□□□ 0.11
COL4A1-204ENST00000543140 TIA1P31483 386 aaKnown RBP eCLIP15.72■□□□□ 0.11
COL4A1-204ENST00000543140 ALDH3A2P51648 485 aa15.72■□□□□ 0.11
COL4A1-204ENST00000543140 SPESP1Q6UW49 350 aa15.72■□□□□ 0.11
COL4A1-204ENST00000543140 ARMCX6Q7L4S7 300 aa15.72■□□□□ 0.11
COL4A1-204ENST00000543140 SLC5A11Q8WWX8 675 aa15.72■□□□□ 0.11
COL4A1-204ENST00000543140 LTB4R2Q9NPC1 389 aa15.72■□□□□ 0.11
COL4A1-204ENST00000543140 CD320Q9NPF0 282 aa15.72■□□□□ 0.11
COL4A1-204ENST00000543140 ITM2CQ9NQX7 267 aa15.72■□□□□ 0.11
COL4A1-204ENST00000543140 OBP2AQ9NY56 170 aa15.72■□□□□ 0.11
COL4A1-204ENST00000543140 H3BSA7 217 aa15.71■□□□□ 0.11
COL4A1-204ENST00000543140 NTRK1P04629 796 aa15.71■□□□□ 0.11
COL4A1-204ENST00000543140 GDI1P31150 447 aa15.71■□□□□ 0.11
COL4A1-204ENST00000543140 SEC13P55735 322 aa15.71■□□□□ 0.11
COL4A1-204ENST00000543140 ADARB1P78563 741 aaKnown RBP15.71■□□□□ 0.11
COL4A1-204ENST00000543140 CDK3Q00526 305 aa15.71■□□□□ 0.11
COL4A1-204ENST00000543140 LARP7Q4G0J3 582 aaKnown RBP eCLIP15.71■□□□□ 0.11
COL4A1-204ENST00000543140 FAM46CQ5VWP2 391 aa15.71■□□□□ 0.11
COL4A1-204ENST00000543140 TMEM179BQ7Z7N9 219 aa15.71■□□□□ 0.11
COL4A1-204ENST00000543140 OR52E4Q8NGH9 312 aa15.71■□□□□ 0.11
COL4A1-204ENST00000543140 WDR48Q8TAF3 677 aa15.71■□□□□ 0.11
COL4A1-204ENST00000543140 SDCCAG3Q96C92 435 aa15.71■□□□□ 0.11
COL4A1-204ENST00000543140 REPS1Q96D71 796 aa15.71■□□□□ 0.11
COL4A1-204ENST00000543140 COX14Q96I36 57 aa15.71■□□□□ 0.11
COL4A1-204ENST00000543140 MUS81Q96NY9 551 aa15.71■□□□□ 0.11
COL4A1-204ENST00000543140 MYADMQ96S97 322 aa15.71■□□□□ 0.11
COL4A1-204ENST00000543140 TRIM4Q9C037 500 aa15.71■□□□□ 0.11
COL4A1-204ENST00000543140 NKX2-4Q9H2Z4 354 aa15.71■□□□□ 0.11
COL4A1-204ENST00000543140 MBNL1Q9NR56 388 aaKnown RBP15.71■□□□□ 0.11
COL4A1-204ENST00000543140 E2F6O75461 281 aa15.71■□□□□ 0.11
COL4A1-204ENST00000543140 IDSP22304 550 aa15.71■□□□□ 0.11
COL4A1-204ENST00000543140 ASMTP46597 345 aa15.71■□□□□ 0.11
COL4A1-204ENST00000543140 CASP9P55211 416 aa15.71■□□□□ 0.11
COL4A1-204ENST00000543140 E2F2Q14209 437 aa15.71■□□□□ 0.11
COL4A1-204ENST00000543140 CST6Q15828 149 aa15.71■□□□□ 0.11
COL4A1-204ENST00000543140 AGBL4Q5VU57 503 aa15.71■□□□□ 0.11
COL4A1-204ENST00000543140 NXPE4Q6UWF7 544 aa15.71■□□□□ 0.11
COL4A1-204ENST00000543140 PARM1Q6UWI2 310 aa15.71■□□□□ 0.11
COL4A1-204ENST00000543140 ABRAXAS1Q6UWZ7 409 aa15.71■□□□□ 0.11
COL4A1-204ENST00000543140 COMMD6Q7Z4G1 85 aa15.71■□□□□ 0.11
COL4A1-204ENST00000543140 PATL1Q86TB9 770 aaKnown RBP15.71■□□□□ 0.11
COL4A1-204ENST00000543140 SERPINA11Q86U17 422 aa15.71■□□□□ 0.11
COL4A1-204ENST00000543140 GALNT15Q8N3T1 639 aa15.71■□□□□ 0.11
COL4A1-204ENST00000543140 OR4K1Q8NGD4 311 aa15.71■□□□□ 0.11
COL4A1-204ENST00000543140 TFGQ92734 400 aaPredicted RBP15.71■□□□□ 0.11
COL4A1-204ENST00000543140 RAB7BQ96AH8 199 aa15.71■□□□□ 0.11
COL4A1-204ENST00000543140 PYURFQ96I23 114 aa15.71■□□□□ 0.11
COL4A1-204ENST00000543140 EFCAB11Q9BUY7 163 aa15.71■□□□□ 0.11
COL4A1-204ENST00000543140 MCOLN1Q9GZU1 580 aa15.71■□□□□ 0.11
COL4A1-204ENST00000543140 RBM38Q9H0Z9 239 aaKnown RBP15.71■□□□□ 0.11
COL4A1-204ENST00000543140 TPT1P8Q9HAU6 139 aa15.71■□□□□ 0.11
COL4A1-204ENST00000543140 DMRT3Q9NQL9 472 aa15.71■□□□□ 0.11
COL4A1-204ENST00000543140 EXO1Q9UQ84 846 aaKnown RBP15.71■□□□□ 0.11
COL4A1-204ENST00000543140 A0A1W2PP55 124 aa15.7■□□□□ 0.1
COL4A1-204ENST00000543140 NUDT7P0C024 238 aa15.7■□□□□ 0.1
COL4A1-204ENST00000543140 THRBP10828 461 aa15.7■□□□□ 0.1
COL4A1-204ENST00000543140 PCSK2P16519 638 aa15.7■□□□□ 0.1
COL4A1-204ENST00000543140 HPCAL1P37235 193 aa15.7■□□□□ 0.1
COL4A1-204ENST00000543140 YAP1P46937 504 aaKnown RBP15.7■□□□□ 0.1
COL4A1-204ENST00000543140 MC1RQ01726 317 aa15.7■□□□□ 0.1
COL4A1-204ENST00000543140 HIST2H2ACQ16777 129 aaPredicted RBP15.7■□□□□ 0.1
COL4A1-204ENST00000543140 PAGE2BQ5JRK9 111 aa15.7■□□□□ 0.1
COL4A1-204ENST00000543140 HIST2H2AA3Q6FI13 130 aa15.7■□□□□ 0.1
COL4A1-204ENST00000543140 SYCE2Q6PIF2 218 aa15.7■□□□□ 0.1
COL4A1-204ENST00000543140 ADAMTSL4Q6UY14 1074 aa15.7■□□□□ 0.1
COL4A1-204ENST00000543140 PDZD3Q86UT5 571 aa15.7■□□□□ 0.1
COL4A1-204ENST00000543140 ZZZ3Q8IYH5 903 aa15.7■□□□□ 0.1
COL4A1-204ENST00000543140 FGF14Q92915 247 aa15.7■□□□□ 0.1
COL4A1-204ENST00000543140 F5P12259 2224 aa15.7■□□□□ 0.1
COL4A1-204ENST00000543140 PAK4O96013 591 aaPredicted RBP15.7■□□□□ 0.1
COL4A1-204ENST00000543140 GPX2P18283 190 aa15.7■□□□□ 0.1
COL4A1-204ENST00000543140 VMACQ2NL98 169 aa15.7■□□□□ 0.1
COL4A1-204ENST00000543140 ZNF385BQ569K4 471 aa15.7■□□□□ 0.1
COL4A1-204ENST00000543140 PRAMEF14Q5SWL7 426 aa15.7■□□□□ 0.1
COL4A1-204ENST00000543140 PRAMEF13Q5VWM6 474 aa15.7■□□□□ 0.1
COL4A1-204ENST00000543140 PPP2R2DQ66LE6 453 aa15.7■□□□□ 0.1
COL4A1-204ENST00000543140 PTOV1Q86YD1 416 aa15.7■□□□□ 0.1
COL4A1-204ENST00000543140 HDDC3Q8N4P3 179 aa15.7■□□□□ 0.1
COL4A1-204ENST00000543140 NCSTNQ92542 709 aa15.7■□□□□ 0.1
COL4A1-204ENST00000543140 RAD51AP1Q96B01 352 aa15.7■□□□□ 0.1
COL4A1-204ENST00000543140 METTL2AQ96IZ6 378 aaKnown RBP15.7■□□□□ 0.1
COL4A1-204ENST00000543140 TOR3AQ9H497 397 aa15.7■□□□□ 0.1
COL4A1-204ENST00000543140 THEGQ9P2T0 379 aa15.7■□□□□ 0.1
COL4A1-204ENST00000543140 PCDHB11Q9Y5F2 797 aa15.7■□□□□ 0.1
COL4A1-204ENST00000543140 PLXND1Q9Y4D7 1925 aa15.7■□□□□ 0.1
COL4A1-204ENST00000543140 CCNDBP1O95273 360 aa15.69■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms