RNA–Protein interactions for RNA: ENST00000540539.5

CLIP1-214, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2 BASIC

Gene CLIP1, Length 2,592 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-214ENST00000540539 ZNF157P51786 506 aaPredicted RBP9.17□□□□□ -0.94
CLIP1-214ENST00000540539 ATXN1P54253 815 aaKnown RBP9.17□□□□□ -0.94
CLIP1-214ENST00000540539 TAS2R60P59551 318 aa9.17□□□□□ -0.94
CLIP1-214ENST00000540539 C1QTNF8P60827 252 aa9.17□□□□□ -0.94
CLIP1-214ENST00000540539 CRADDP78560 199 aa9.17□□□□□ -0.94
CLIP1-214ENST00000540539 LIPEQ05469 1076 aa9.17□□□□□ -0.94
CLIP1-214ENST00000540539 PPP1R8Q12972 351 aaKnown RBP9.17□□□□□ -0.94
CLIP1-214ENST00000540539 SMAD4Q13485 552 aaKnown RBP9.17□□□□□ -0.94
CLIP1-214ENST00000540539 SNTB1Q13884 538 aaKnown RBP9.17□□□□□ -0.94
CLIP1-214ENST00000540539 FRG1Q14331 258 aaKnown RBP9.17□□□□□ -0.94
CLIP1-214ENST00000540539 TMEM132BQ14DG7 1078 aa9.17□□□□□ -0.94
CLIP1-214ENST00000540539 TAZQ16635 292 aa9.17□□□□□ -0.94
CLIP1-214ENST00000540539 VPS26BQ4G0F5 336 aa9.17□□□□□ -0.94
CLIP1-214ENST00000540539 AARDQ4LEZ3 155 aa9.17□□□□□ -0.94
CLIP1-214ENST00000540539 ACER2Q5QJU3 275 aa9.17□□□□□ -0.94
CLIP1-214ENST00000540539 FAM74A1Q5RGS3 127 aa9.17□□□□□ -0.94
CLIP1-214ENST00000540539 SPRYD7Q5W111 196 aa9.17□□□□□ -0.94
CLIP1-214ENST00000540539 STEAP4Q687X5 459 aa9.17□□□□□ -0.94
CLIP1-214ENST00000540539 ASPGQ86U10 573 aa9.17□□□□□ -0.94
CLIP1-214ENST00000540539 RFX6Q8HWS3 928 aa9.17□□□□□ -0.94
CLIP1-214ENST00000540539 FAM178BQ8IXR5 827 aa9.17□□□□□ -0.94
CLIP1-214ENST00000540539 LIX1Q8N485 282 aa9.17□□□□□ -0.94
CLIP1-214ENST00000540539 ARFGAP1Q8N6T3 406 aa9.17□□□□□ -0.94
CLIP1-214ENST00000540539 LRRC17Q8N6Y2 441 aa9.17□□□□□ -0.94
CLIP1-214ENST00000540539 FAM181AQ8N9Y4 354 aa9.17□□□□□ -0.94
CLIP1-214ENST00000540539 FCGR1BQ92637 280 aa9.17□□□□□ -0.94
CLIP1-214ENST00000540539 TMEM125Q96AQ2 219 aa9.17□□□□□ -0.94
CLIP1-214ENST00000540539 LRRC58Q96CX6 371 aa9.17□□□□□ -0.94
CLIP1-214ENST00000540539 GPR78Q96P69 363 aa9.17□□□□□ -0.94
CLIP1-214ENST00000540539 SPSB2Q99619 263 aa9.17□□□□□ -0.94
CLIP1-214ENST00000540539 ALX4Q9H161 411 aaPredicted RBP9.17□□□□□ -0.94
CLIP1-214ENST00000540539 HCN3Q9P1Z3 774 aa9.17□□□□□ -0.94
CLIP1-214ENST00000540539 SMCHD1A6NHR9 2005 aa9.17□□□□□ -0.94
CLIP1-214ENST00000540539 RLFQ13129 1914 aa9.17□□□□□ -0.94
CLIP1-214ENST00000540539 TRBV23OR9-2A0A075B6M9 112 aa9.17□□□□□ -0.94
CLIP1-214ENST00000540539 WDR27A2RRH5 827 aa9.17□□□□□ -0.94
CLIP1-214ENST00000540539 ORC5O43913 435 aa9.17□□□□□ -0.94
CLIP1-214ENST00000540539 SLC43A1O75387 559 aa9.17□□□□□ -0.94
CLIP1-214ENST00000540539 VPS26AO75436 327 aa9.17□□□□□ -0.94
CLIP1-214ENST00000540539 GADD45GO95257 159 aa9.17□□□□□ -0.94
CLIP1-214ENST00000540539 TNNC2P02585 160 aa9.17□□□□□ -0.94
CLIP1-214ENST00000540539 MPOP05164 745 aa9.17□□□□□ -0.94
CLIP1-214ENST00000540539 RB1P06400 928 aa9.17□□□□□ -0.94
CLIP1-214ENST00000540539 NMBP08949 121 aa9.17□□□□□ -0.94
CLIP1-214ENST00000540539 MUC1P15941 1255 aaPredicted RBP9.17□□□□□ -0.94
CLIP1-214ENST00000540539 PRKACGP22612 351 aa9.17□□□□□ -0.94
CLIP1-214ENST00000540539 KCNQ1P51787 676 aa9.17□□□□□ -0.94
CLIP1-214ENST00000540539 XKP51811 444 aa9.17□□□□□ -0.94
CLIP1-214ENST00000540539 ATP12AP54707 1039 aa9.17□□□□□ -0.94
CLIP1-214ENST00000540539 PRKG2Q13237 762 aa9.17□□□□□ -0.94
CLIP1-214ENST00000540539 PPA1Q15181 289 aa9.17□□□□□ -0.94
CLIP1-214ENST00000540539 DGKKQ5KSL6 1271 aa9.17□□□□□ -0.94
CLIP1-214ENST00000540539 RGMBQ6NW40 437 aa9.17□□□□□ -0.94
CLIP1-214ENST00000540539 NLRC3Q7RTR2 1065 aa9.17□□□□□ -0.94
CLIP1-214ENST00000540539 ZER1Q7Z7L7 766 aa9.17□□□□□ -0.94
CLIP1-214ENST00000540539 PHF13Q86YI8 300 aaPredicted RBP9.17□□□□□ -0.94
CLIP1-214ENST00000540539 CHPFQ8IZ52 775 aa9.17□□□□□ -0.94
CLIP1-214ENST00000540539 SLC43A2Q8N370 569 aa9.17□□□□□ -0.94
CLIP1-214ENST00000540539 TMEM151AQ8N4L1 468 aa9.17□□□□□ -0.94
CLIP1-214ENST00000540539 PQLC3Q8N755 202 aa9.17□□□□□ -0.94
CLIP1-214ENST00000540539 ZC3HAV1LQ96H79 300 aaKnown RBP9.17□□□□□ -0.94
CLIP1-214ENST00000540539 COQ10AQ96MF6 247 aa9.17□□□□□ -0.94
CLIP1-214ENST00000540539 NSMCE2Q96MF7 247 aa9.17□□□□□ -0.94
CLIP1-214ENST00000540539 NEU1Q99519 415 aa9.17□□□□□ -0.94
CLIP1-214ENST00000540539 CBWD1Q9BRT8 395 aa9.17□□□□□ -0.94
CLIP1-214ENST00000540539 NTPCRQ9BSD7 190 aaKnown RBP9.17□□□□□ -0.94
CLIP1-214ENST00000540539 MARVELD1Q9BSK0 173 aa9.17□□□□□ -0.94
CLIP1-214ENST00000540539 ZNF436Q9C0F3 470 aaPredicted RBP9.17□□□□□ -0.94
CLIP1-214ENST00000540539 DNTTIP1Q9H147 329 aa9.17□□□□□ -0.94
CLIP1-214ENST00000540539 SDCBP2Q9H190 292 aa9.17□□□□□ -0.94
CLIP1-214ENST00000540539 AGO3Q9H9G7 860 aaKnown RBP9.17□□□□□ -0.94
CLIP1-214ENST00000540539 RBFOX1Q9NWB1 397 aaKnown RBP9.17□□□□□ -0.94
CLIP1-214ENST00000540539 SEC14L4Q9UDX3 406 aa9.17□□□□□ -0.94
CLIP1-214ENST00000540539 EVLQ9UI08 416 aaPredicted RBP9.17□□□□□ -0.94
CLIP1-214ENST00000540539 TMEFF2Q9UIK5 374 aaPredicted RBP9.17□□□□□ -0.94
CLIP1-214ENST00000540539 CDH9Q9ULB4 789 aa9.17□□□□□ -0.94
CLIP1-214ENST00000540539 SLC6A5Q9Y345 797 aa9.17□□□□□ -0.94
CLIP1-214ENST00000540539 DENND4AQ7Z401 1863 aa9.16□□□□□ -0.94
CLIP1-214ENST00000540539 A0A0J9YYE9 177 aa9.16□□□□□ -0.94
CLIP1-214ENST00000540539 TMEM238LA0A1B0GVL6 79 aa9.16□□□□□ -0.94
CLIP1-214ENST00000540539 FAM234BA2RU67 622 aa9.16□□□□□ -0.94
CLIP1-214ENST00000540539 SLC35F4A4IF30 521 aa9.16□□□□□ -0.94
CLIP1-214ENST00000540539 USP17L15C9J2P7 530 aa9.16□□□□□ -0.94
CLIP1-214ENST00000540539 USP17L13C9JLJ4 530 aa9.16□□□□□ -0.94
CLIP1-214ENST00000540539 USP17L11C9JVI0 530 aa9.16□□□□□ -0.94
CLIP1-214ENST00000540539 USP17L18D6R9N7 530 aa9.16□□□□□ -0.94
CLIP1-214ENST00000540539 USP17L22D6RA61 530 aa9.16□□□□□ -0.94
CLIP1-214ENST00000540539 USP17L17D6RBQ6 530 aa9.16□□□□□ -0.94
CLIP1-214ENST00000540539 USP17L19D6RCP7 530 aa9.16□□□□□ -0.94
CLIP1-214ENST00000540539 USP17L20D6RJB6 530 aa9.16□□□□□ -0.94
CLIP1-214ENST00000540539 K7ERI5 159 aa9.16□□□□□ -0.94
CLIP1-214ENST00000540539 AIPO00170 330 aa9.16□□□□□ -0.94
CLIP1-214ENST00000540539 PMM2O15305 246 aa9.16□□□□□ -0.94
CLIP1-214ENST00000540539 NPHS1O60500 1241 aa9.16□□□□□ -0.94
CLIP1-214ENST00000540539 TULP3O75386 442 aa9.16□□□□□ -0.94
CLIP1-214ENST00000540539 SUPT7LO94864 414 aa9.16□□□□□ -0.94
CLIP1-214ENST00000540539 RASGRP1O95267 797 aa9.16□□□□□ -0.94
CLIP1-214ENST00000540539 MT-CO1P00395 513 aa9.16□□□□□ -0.94
CLIP1-214ENST00000540539 ARP10275 920 aa9.16□□□□□ -0.94
CLIP1-214ENST00000540539 LAP3P28838 519 aa9.16□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms