RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 PSMB5P28074 263 aa19.9■□□□□ 0.78
VPS28-209ENST00000528142 PKLRP30613 574 aa19.9■□□□□ 0.78
VPS28-209ENST00000528142 CDKN2CP42773 168 aa19.9■□□□□ 0.78
VPS28-209ENST00000528142 RAB28P51157 221 aa19.9■□□□□ 0.78
VPS28-209ENST00000528142 TDGQ13569 410 aa19.9■□□□□ 0.78
VPS28-209ENST00000528142 RPE65Q16518 533 aa19.9■□□□□ 0.78
VPS28-209ENST00000528142 GCNT7Q6ZNI0 430 aa19.9■□□□□ 0.78
VPS28-209ENST00000528142 LPCAT2Q7L5N7 544 aa19.9■□□□□ 0.78
VPS28-209ENST00000528142 COMMD6Q7Z4G1 85 aa19.9■□□□□ 0.78
VPS28-209ENST00000528142 RAB42Q8N4Z0 105 aa19.9■□□□□ 0.78
VPS28-209ENST00000528142 OR4K1Q8NGD4 311 aa19.9■□□□□ 0.78
VPS28-209ENST00000528142 PUM2Q8TB72 1066 aaKnown RBP eCLIP19.9■□□□□ 0.78
VPS28-209ENST00000528142 FAM110BQ8TC76 370 aa19.9■□□□□ 0.78
VPS28-209ENST00000528142 LRTOMTQ8WZ04 291 aa19.9■□□□□ 0.78
VPS28-209ENST00000528142 STARD8Q92502 1023 aa19.9■□□□□ 0.78
VPS28-209ENST00000528142 PDXPQ96GD0 296 aa19.9■□□□□ 0.78
VPS28-209ENST00000528142 WDR92Q96MX6 357 aa19.9■□□□□ 0.78
VPS28-209ENST00000528142 CPPED1Q9BRF8 314 aaPredicted RBP19.9■□□□□ 0.78
VPS28-209ENST00000528142 EFHD1Q9BUP0 239 aa19.9■□□□□ 0.78
VPS28-209ENST00000528142 THUMPD3Q9BV44 507 aaKnown RBP19.9■□□□□ 0.78
VPS28-209ENST00000528142 RHBGQ9H310 441 aa19.9■□□□□ 0.78
VPS28-209ENST00000528142 SCHIP1Q9P0W5 487 aaPredicted RBP19.9■□□□□ 0.78
VPS28-209ENST00000528142 BTBD3Q9Y2F9 522 aa19.9■□□□□ 0.78
VPS28-209ENST00000528142 AP3M1Q9Y2T2 418 aa19.9■□□□□ 0.78
VPS28-209ENST00000528142 PDZK1P1A8MUH7 402 aa19.89■□□□□ 0.77
VPS28-209ENST00000528142 SCAMP2O15127 329 aaKnown RBP19.89■□□□□ 0.77
VPS28-209ENST00000528142 PCDH7O60245 1069 aa19.89■□□□□ 0.77
VPS28-209ENST00000528142 IGLV3-19P01714 112 aa19.89■□□□□ 0.77
VPS28-209ENST00000528142 COX7A2P14406 83 aa19.89■□□□□ 0.77
VPS28-209ENST00000528142 AQP4P55087 323 aa19.89■□□□□ 0.77
VPS28-209ENST00000528142 GRAMD1BQ3KR37 738 aa19.89■□□□□ 0.77
VPS28-209ENST00000528142 GLYATQ6IB77 296 aa19.89■□□□□ 0.77
VPS28-209ENST00000528142 CAMKMTQ7Z624 323 aa19.89■□□□□ 0.77
VPS28-209ENST00000528142 METTL4Q8N3J2 472 aa19.89■□□□□ 0.77
VPS28-209ENST00000528142 DTWD1Q8N5C7 304 aa19.89■□□□□ 0.77
VPS28-209ENST00000528142 CCDC115Q96NT0 180 aa19.89■□□□□ 0.77
VPS28-209ENST00000528142 XKR8Q9H6D3 395 aa19.89■□□□□ 0.77
VPS28-209ENST00000528142 MAGEL2Q9UJ55 1249 aa19.89■□□□□ 0.77
VPS28-209ENST00000528142 MAPRE3Q9UPY8 281 aa19.89■□□□□ 0.77
VPS28-209ENST00000528142 EXO1Q9UQ84 846 aaKnown RBP19.89■□□□□ 0.77
VPS28-209ENST00000528142 DTNAQ9Y4J8 743 aa19.89■□□□□ 0.77
VPS28-209ENST00000528142 GABRR3A8MPY1 467 aa19.88■□□□□ 0.77
VPS28-209ENST00000528142 KLHL18O94889 574 aa19.88■□□□□ 0.77
VPS28-209ENST00000528142 SEMA4FO95754 770 aa19.88■□□□□ 0.77
VPS28-209ENST00000528142 TBX6O95947 436 aaPredicted RBP19.88■□□□□ 0.77
VPS28-209ENST00000528142 GPIP06744 558 aa19.88■□□□□ 0.77
VPS28-209ENST00000528142 CHRNB1P11230 501 aa19.88■□□□□ 0.77
VPS28-209ENST00000528142 GGT1P19440 569 aa19.88■□□□□ 0.77
VPS28-209ENST00000528142 PTX3P26022 381 aaPredicted RBP19.88■□□□□ 0.77
VPS28-209ENST00000528142 SOX11P35716 441 aa19.88■□□□□ 0.77
VPS28-209ENST00000528142 TRPC1P48995 793 aa19.88■□□□□ 0.77
VPS28-209ENST00000528142 CCR8P51685 355 aa19.88■□□□□ 0.77
VPS28-209ENST00000528142 PHEXP78562 749 aa19.88■□□□□ 0.77
VPS28-209ENST00000528142 REEP5Q00765 189 aa19.88■□□□□ 0.77
VPS28-209ENST00000528142 DUOXA1Q1HG43 343 aa19.88■□□□□ 0.77
VPS28-209ENST00000528142 HKDC1Q2TB90 917 aa19.88■□□□□ 0.77
VPS28-209ENST00000528142 HMBOX1Q6NT76 420 aa19.88■□□□□ 0.77
VPS28-209ENST00000528142 ZNF687Q8N1G0 1237 aa19.88■□□□□ 0.77
VPS28-209ENST00000528142 FLCNQ8NFG4 579 aa19.88■□□□□ 0.77
VPS28-209ENST00000528142 OR2L8Q8NGY9 312 aa19.88■□□□□ 0.77
VPS28-209ENST00000528142 OR10A6Q8NH74 314 aa19.88■□□□□ 0.77
VPS28-209ENST00000528142 MIEF2Q96C03 454 aa19.88■□□□□ 0.77
VPS28-209ENST00000528142 AIF1LQ9BQI0 150 aa19.88■□□□□ 0.77
VPS28-209ENST00000528142 RAB11FIP5Q9BXF6 653 aa19.88■□□□□ 0.77
VPS28-209ENST00000528142 KAT8Q9H7Z6 458 aaKnown RBP19.88■□□□□ 0.77
VPS28-209ENST00000528142 NT5DC2Q9H857 520 aa19.88■□□□□ 0.77
VPS28-209ENST00000528142 PRM3Q9NNZ6 103 aa19.88■□□□□ 0.77
VPS28-209ENST00000528142 FAM120CQ9NX05 1096 aaKnown RBP19.88■□□□□ 0.77
VPS28-209ENST00000528142 ADGRE2Q9UHX3 823 aa19.88■□□□□ 0.77
VPS28-209ENST00000528142 PNMA8BQ9ULN7 279 aaPredicted RBP19.88■□□□□ 0.77
VPS28-209ENST00000528142 MAN2B1O00754 1011 aa19.88■□□□□ 0.77
VPS28-209ENST00000528142 RFXANKO14593 260 aa19.88■□□□□ 0.77
VPS28-209ENST00000528142 TNFRSF10CO14798 259 aa19.88■□□□□ 0.77
VPS28-209ENST00000528142 YY2O15391 372 aa19.88■□□□□ 0.77
VPS28-209ENST00000528142 GSNP06396 782 aa19.88■□□□□ 0.77
VPS28-209ENST00000528142 LAMP1P11279 417 aa19.88■□□□□ 0.77
VPS28-209ENST00000528142 PIM1P11309 404 aaPredicted RBP19.88■□□□□ 0.77
VPS28-209ENST00000528142 CXCR2P25025 360 aa19.88■□□□□ 0.77
VPS28-209ENST00000528142 OXTRP30559 389 aa19.88■□□□□ 0.77
VPS28-209ENST00000528142 GZMMP51124 257 aa19.88■□□□□ 0.77
VPS28-209ENST00000528142 RBBP5Q15291 538 aaKnown RBP19.88■□□□□ 0.77
VPS28-209ENST00000528142 ABRAXAS1Q6UWZ7 409 aa19.88■□□□□ 0.77
VPS28-209ENST00000528142 TMEM132CQ8N3T6 1108 aa19.88■□□□□ 0.77
VPS28-209ENST00000528142 TMEM145Q8NBT3 493 aa19.88■□□□□ 0.77
VPS28-209ENST00000528142 CATSPER1Q8NEC5 780 aa19.88■□□□□ 0.77
VPS28-209ENST00000528142 ZNF548Q8NEK5 533 aaPredicted RBP19.88■□□□□ 0.77
VPS28-209ENST00000528142 OR2T12Q8NG77 320 aa19.88■□□□□ 0.77
VPS28-209ENST00000528142 OR52E1Q8NGJ3 308 aa19.88■□□□□ 0.77
VPS28-209ENST00000528142 WDR48Q8TAF3 677 aa19.88■□□□□ 0.77
VPS28-209ENST00000528142 NELL1Q92832 810 aa19.88■□□□□ 0.77
VPS28-209ENST00000528142 BIRC7Q96CA5 298 aa19.88■□□□□ 0.77
VPS28-209ENST00000528142 COQ8BQ96D53 544 aa19.88■□□□□ 0.77
VPS28-209ENST00000528142 GBP5Q96PP8 586 aa19.88■□□□□ 0.77
VPS28-209ENST00000528142 PITHD1Q9GZP4 211 aaPredicted RBP19.88■□□□□ 0.77
VPS28-209ENST00000528142 POLMQ9NP87 494 aaPredicted RBP19.88■□□□□ 0.77
VPS28-209ENST00000528142 TBC1D29Q9UFV1 150 aa19.88■□□□□ 0.77
VPS28-209ENST00000528142 ICKQ9UPZ9 632 aa19.88■□□□□ 0.77
VPS28-209ENST00000528142 ERVK-11Q9UQG0 969 aa19.88■□□□□ 0.77
VPS28-209ENST00000528142 PRAMEF33A0A0G2JMD5 474 aa19.87■□□□□ 0.77
VPS28-209ENST00000528142 GNG14A0A1W2PPG7 69 aa19.87■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms