RNA–Protein interactions for RNA: ENST00000519664.1

SYNPO-204, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 4,571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-204ENST00000519664 EBF1Q9UH73 591 aa11.35□□□□□ -0.59
SYNPO-204ENST00000519664 FBXO9Q9UK97 447 aaPredicted RBP11.35□□□□□ -0.59
SYNPO-204ENST00000519664 POLR1DQ9Y2S0 133 aa11.35□□□□□ -0.59
SYNPO-204ENST00000519664 FAM186AA6NE01 2351 aa11.35□□□□□ -0.59
SYNPO-204ENST00000519664 DDX60Q8IY21 1712 aaKnown RBP11.35□□□□□ -0.59
SYNPO-204ENST00000519664 LRRC72A6NJI9 287 aa11.35□□□□□ -0.59
SYNPO-204ENST00000519664 H7BY64 318 aa11.35□□□□□ -0.59
SYNPO-204ENST00000519664 SCN2BO60939 215 aa11.35□□□□□ -0.59
SYNPO-204ENST00000519664 WBP4O75554 376 aaKnown RBP11.35□□□□□ -0.59
SYNPO-204ENST00000519664 STX11O75558 287 aa11.35□□□□□ -0.59
SYNPO-204ENST00000519664 APODP05090 189 aa11.35□□□□□ -0.59
SYNPO-204ENST00000519664 TCF3P15923 654 aa11.35□□□□□ -0.59
SYNPO-204ENST00000519664 RFC2P35250 354 aa11.35□□□□□ -0.59
SYNPO-204ENST00000519664 TIE1P35590 1138 aa11.35□□□□□ -0.59
SYNPO-204ENST00000519664 FOXM1Q08050 763 aa11.35□□□□□ -0.59
SYNPO-204ENST00000519664 CRB2Q5IJ48 1285 aa11.35□□□□□ -0.59
SYNPO-204ENST00000519664 BEND5Q7L4P6 421 aa11.35□□□□□ -0.59
SYNPO-204ENST00000519664 MAVSQ7Z434 540 aa11.35□□□□□ -0.59
SYNPO-204ENST00000519664 TMEM25Q86YD3 366 aa11.35□□□□□ -0.59
SYNPO-204ENST00000519664 ISOC1Q96CN7 298 aa11.35□□□□□ -0.59
SYNPO-204ENST00000519664 PRAP1Q96NZ9 151 aa11.35□□□□□ -0.59
SYNPO-204ENST00000519664 LMAN2LQ9H0V9 348 aa11.35□□□□□ -0.59
SYNPO-204ENST00000519664 DCSTAMPQ9H295 470 aa11.35□□□□□ -0.59
SYNPO-204ENST00000519664 IL26Q9NPH9 171 aa11.35□□□□□ -0.59
SYNPO-204ENST00000519664 GLI3P10071 1580 aa11.34□□□□□ -0.59
SYNPO-204ENST00000519664 CHURC1-FNTBB4DL54 471 aa11.34□□□□□ -0.59
SYNPO-204ENST00000519664 RTCAO00442 366 aaKnown RBP11.34□□□□□ -0.59
SYNPO-204ENST00000519664 VIPP01282 170 aa11.34□□□□□ -0.59
SYNPO-204ENST00000519664 NCBP2P52298 156 aaKnown RBP eCLIP11.34□□□□□ -0.59
SYNPO-204ENST00000519664 RAB39AQ14964 217 aa11.34□□□□□ -0.59
SYNPO-204ENST00000519664 ZNF433Q8N7K0 673 aaPredicted RBP11.34□□□□□ -0.59
SYNPO-204ENST00000519664 CCM2Q9BSQ5 444 aa11.34□□□□□ -0.59
SYNPO-204ENST00000519664 ZSCAN5AQ9BUG6 496 aa11.34□□□□□ -0.59
SYNPO-204ENST00000519664 EFCAB11Q9BUY7 163 aa11.34□□□□□ -0.59
SYNPO-204ENST00000519664 FAM240BA0A1B0GVZ2 78 aa11.34□□□□□ -0.59
SYNPO-204ENST00000519664 CYBAP13498 195 aa11.34□□□□□ -0.59
SYNPO-204ENST00000519664 GTF2E2P29084 291 aaKnown RBP11.34□□□□□ -0.59
SYNPO-204ENST00000519664 ACTR1BP42025 376 aa11.34□□□□□ -0.59
SYNPO-204ENST00000519664 MAP2K4P45985 399 aa11.34□□□□□ -0.59
SYNPO-204ENST00000519664 PGFP49763 221 aa11.34□□□□□ -0.59
SYNPO-204ENST00000519664 APLP1P51693 650 aa11.34□□□□□ -0.59
SYNPO-204ENST00000519664 CLCN4P51793 760 aa11.34□□□□□ -0.59
SYNPO-204ENST00000519664 ACTR1AP61163 376 aa11.34□□□□□ -0.59
SYNPO-204ENST00000519664 DNASE1L3Q13609 305 aa11.34□□□□□ -0.59
SYNPO-204ENST00000519664 MOGQ16653 247 aa11.34□□□□□ -0.59
SYNPO-204ENST00000519664 CRTC2Q53ET0 693 aaPredicted RBP11.34□□□□□ -0.59
SYNPO-204ENST00000519664 LRRC70Q7Z2Q7 622 aa11.34□□□□□ -0.59
SYNPO-204ENST00000519664 RNF130Q86XS8 419 aa11.34□□□□□ -0.59
SYNPO-204ENST00000519664 CLECL1Q8IZS7 167 aa11.34□□□□□ -0.59
SYNPO-204ENST00000519664 MINDY1Q8N5J2 469 aa11.34□□□□□ -0.59
SYNPO-204ENST00000519664 CHST14Q8NCH0 376 aa11.34□□□□□ -0.59
SYNPO-204ENST00000519664 DOK4Q8TEW6 326 aa11.34□□□□□ -0.59
SYNPO-204ENST00000519664 ZBED6CLQ96FA7 236 aaPredicted RBP11.34□□□□□ -0.59
SYNPO-204ENST00000519664 GFM1Q96RP9 751 aaKnown RBP11.34□□□□□ -0.59
SYNPO-204ENST00000519664 XKR8Q9H6D3 395 aa11.34□□□□□ -0.59
SYNPO-204ENST00000519664 MRPL39Q9NYK5 338 aaKnown RBP11.34□□□□□ -0.59
SYNPO-204ENST00000519664 PCP4L1A6NKN8 68 aa11.34□□□□□ -0.59
SYNPO-204ENST00000519664 TNFRSF1BP20333 461 aa11.34□□□□□ -0.59
SYNPO-204ENST00000519664 CD247P20963 164 aa11.34□□□□□ -0.59
SYNPO-204ENST00000519664 KCNC1P48547 511 aa11.34□□□□□ -0.59
SYNPO-204ENST00000519664 RPS26P62854 115 aaKnown RBP11.34□□□□□ -0.59
SYNPO-204ENST00000519664 NTHL1P78549 312 aa11.34□□□□□ -0.59
SYNPO-204ENST00000519664 RELAQ04206 551 aa11.34□□□□□ -0.59
SYNPO-204ENST00000519664 PLET1Q6UQ28 207 aa11.34□□□□□ -0.59
SYNPO-204ENST00000519664 ALKAL1Q6UXT8 129 aa11.34□□□□□ -0.59
SYNPO-204ENST00000519664 FAM98AQ8NCA5 519 aaKnown RBP11.34□□□□□ -0.59
SYNPO-204ENST00000519664 MAL2Q969L2 176 aa11.34□□□□□ -0.59
SYNPO-204ENST00000519664 COMMD3Q9UBI1 195 aa11.34□□□□□ -0.59
SYNPO-204ENST00000519664 AASSQ9UDR5 926 aa11.34□□□□□ -0.59
SYNPO-204ENST00000519664 ACSL6Q9UKU0 697 aa11.34□□□□□ -0.59
SYNPO-204ENST00000519664 RWDD3Q9Y3V2 267 aa11.34□□□□□ -0.59
SYNPO-204ENST00000519664 RP1P56715 2156 aa11.33□□□□□ -0.59
SYNPO-204ENST00000519664 H3BNH8 94 aa11.33□□□□□ -0.6
SYNPO-204ENST00000519664 MUSKO15146 869 aa11.33□□□□□ -0.6
SYNPO-204ENST00000519664 MAGEB3O15480 346 aa11.33□□□□□ -0.6
SYNPO-204ENST00000519664 HCN1O60741 890 aa11.33□□□□□ -0.6
SYNPO-204ENST00000519664 LRRC32Q14392 662 aa11.33□□□□□ -0.6
SYNPO-204ENST00000519664 KIAA1161Q6NSJ0 714 aa11.33□□□□□ -0.6
SYNPO-204ENST00000519664 LAPTM4BQ86VI4 370 aa11.33□□□□□ -0.6
SYNPO-204ENST00000519664 NPAS3Q8IXF0 933 aa11.33□□□□□ -0.6
SYNPO-204ENST00000519664 SLC35G5Q96KT7 338 aa11.33□□□□□ -0.6
SYNPO-204ENST00000519664 TMEM175Q9BSA9 504 aa11.33□□□□□ -0.6
SYNPO-204ENST00000519664 TREX1Q9NSU2 369 aa11.33□□□□□ -0.6
SYNPO-204ENST00000519664 RIMKLBQ9ULI2 386 aa11.33□□□□□ -0.6
SYNPO-204ENST00000519664 USP22Q9UPT9 525 aa11.33□□□□□ -0.6
SYNPO-204ENST00000519664 WBP11Q9Y2W2 641 aaKnown RBP11.33□□□□□ -0.6
SYNPO-204ENST00000519664 NME7Q9Y5B8 376 aa11.33□□□□□ -0.6
SYNPO-204ENST00000519664 URADA6NGE7 173 aa11.33□□□□□ -0.6
SYNPO-204ENST00000519664 H0YC42 278 aa11.33□□□□□ -0.6
SYNPO-204ENST00000519664 GTPBP1O00178 669 aaKnown RBP11.33□□□□□ -0.6
SYNPO-204ENST00000519664 PLK4O00444 970 aa11.33□□□□□ -0.6
SYNPO-204ENST00000519664 MITFO75030 526 aaPredicted RBP11.33□□□□□ -0.6
SYNPO-204ENST00000519664 VIPR1P32241 457 aa11.33□□□□□ -0.6
SYNPO-204ENST00000519664 CPOXP36551 454 aa11.33□□□□□ -0.6
SYNPO-204ENST00000519664 CCT3P49368 545 aaKnown RBP11.33□□□□□ -0.6
SYNPO-204ENST00000519664 DSTNP60981 165 aa11.33□□□□□ -0.6
SYNPO-204ENST00000519664 IL18Q14116 193 aa11.33□□□□□ -0.6
SYNPO-204ENST00000519664 QPRTQ15274 297 aa11.33□□□□□ -0.6
SYNPO-204ENST00000519664 CYBRD1Q53TN4 286 aa11.33□□□□□ -0.6
SYNPO-204ENST00000519664 NEK5Q6P3R8 708 aa11.33□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms