RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 DTWD1Q8N5C7 304 aa7.63□□□□□ -1.19
LIMCH1-219ENST00000514096 LKAAEAR1Q8TD35 194 aa7.63□□□□□ -1.19
LIMCH1-219ENST00000514096 TFGQ92734 400 aaPredicted RBP7.63□□□□□ -1.19
LIMCH1-219ENST00000514096 PBKQ96KB5 322 aa7.63□□□□□ -1.19
LIMCH1-219ENST00000514096 MCCC1Q96RQ3 725 aaPredicted RBP7.63□□□□□ -1.19
LIMCH1-219ENST00000514096 MAP3K3Q99759 626 aa7.63□□□□□ -1.19
LIMCH1-219ENST00000514096 TMEM79Q9BSE2 394 aa7.63□□□□□ -1.19
LIMCH1-219ENST00000514096 COPS4Q9BT78 406 aa7.63□□□□□ -1.19
LIMCH1-219ENST00000514096 TOR4AQ9NXH8 423 aa7.63□□□□□ -1.19
LIMCH1-219ENST00000514096 CD274Q9NZQ7 290 aa7.63□□□□□ -1.19
LIMCH1-219ENST00000514096 AKAP7Q9P0M2 348 aaPredicted RBP7.63□□□□□ -1.19
LIMCH1-219ENST00000514096 ZNF624Q9P2J8 865 aaPredicted RBP7.63□□□□□ -1.19
LIMCH1-219ENST00000514096 CRNNQ9UBG3 495 aaPredicted RBP7.63□□□□□ -1.19
LIMCH1-219ENST00000514096 ZC3H7BQ9UGR2 993 aaKnown RBP7.63□□□□□ -1.19
LIMCH1-219ENST00000514096 CNOT6Q9ULM6 557 aaKnown RBP7.63□□□□□ -1.19
LIMCH1-219ENST00000514096 SLC12A4Q9UP95 1085 aa7.63□□□□□ -1.19
LIMCH1-219ENST00000514096 PLCL2Q9UPR0 1127 aa7.63□□□□□ -1.19
LIMCH1-219ENST00000514096 PCDHGA11Q9Y5H2 935 aa7.63□□□□□ -1.19
LIMCH1-219ENST00000514096 HEATR9A2RTY3 570 aa7.63□□□□□ -1.19
LIMCH1-219ENST00000514096 PGRP06401 933 aa7.63□□□□□ -1.19
LIMCH1-219ENST00000514096 TMEM11P17152 192 aa7.63□□□□□ -1.19
LIMCH1-219ENST00000514096 NELFEP18615 380 aaKnown RBP7.63□□□□□ -1.19
LIMCH1-219ENST00000514096 NFKB2Q00653 900 aa7.63□□□□□ -1.19
LIMCH1-219ENST00000514096 PUDPQ08623 228 aa7.63□□□□□ -1.19
LIMCH1-219ENST00000514096 PRKAA1Q13131 559 aa7.63□□□□□ -1.19
LIMCH1-219ENST00000514096 PHKG1Q16816 387 aa7.63□□□□□ -1.19
LIMCH1-219ENST00000514096 Q3ZCU0 254 aa7.63□□□□□ -1.19
LIMCH1-219ENST00000514096 ATP1A1-AS1Q5TC04 95 aa7.63□□□□□ -1.19
LIMCH1-219ENST00000514096 ANKS6Q68DC2 871 aa7.63□□□□□ -1.19
LIMCH1-219ENST00000514096 MBOAT1Q6ZNC8 495 aa7.63□□□□□ -1.19
LIMCH1-219ENST00000514096 RAPH1Q70E73 1250 aa7.63□□□□□ -1.19
LIMCH1-219ENST00000514096 KRT74Q7RTS7 529 aa7.63□□□□□ -1.19
LIMCH1-219ENST00000514096 VRK3Q8IV63 474 aa7.63□□□□□ -1.19
LIMCH1-219ENST00000514096 SIDT2Q8NBJ9 832 aaKnown RBP7.63□□□□□ -1.19
LIMCH1-219ENST00000514096 GPR150Q8NGU9 434 aa7.63□□□□□ -1.19
LIMCH1-219ENST00000514096 INSM2Q96T92 566 aaPredicted RBP7.63□□□□□ -1.19
LIMCH1-219ENST00000514096 ARHGAP9Q9BRR9 750 aa7.63□□□□□ -1.19
LIMCH1-219ENST00000514096 ZCCHC2Q9C0B9 1178 aaKnown RBP7.63□□□□□ -1.19
LIMCH1-219ENST00000514096 SRMSQ9H3Y6 488 aa7.63□□□□□ -1.19
LIMCH1-219ENST00000514096 CAB39LQ9H9S4 337 aa7.63□□□□□ -1.19
LIMCH1-219ENST00000514096 ARNT2Q9HBZ2 717 aa7.63□□□□□ -1.19
LIMCH1-219ENST00000514096 NDE1Q9NXR1 346 aa7.63□□□□□ -1.19
LIMCH1-219ENST00000514096 NLGN3Q9NZ94 848 aa7.63□□□□□ -1.19
LIMCH1-219ENST00000514096 GALPQ9UBC7 116 aa7.63□□□□□ -1.19
LIMCH1-219ENST00000514096 ERVK-11Q9UQG0 969 aa7.63□□□□□ -1.19
LIMCH1-219ENST00000514096 DOPEY2Q9Y3R5 2298 aa7.63□□□□□ -1.19
LIMCH1-219ENST00000514096 FANCMQ8IYD8 2048 aa7.63□□□□□ -1.19
LIMCH1-219ENST00000514096 MASP2O00187 686 aa7.62□□□□□ -1.19
LIMCH1-219ENST00000514096 YKT6O15498 198 aa7.62□□□□□ -1.19
LIMCH1-219ENST00000514096 WBP4O75554 376 aaKnown RBP7.62□□□□□ -1.19
LIMCH1-219ENST00000514096 CIB2O75838 187 aa7.62□□□□□ -1.19
LIMCH1-219ENST00000514096 S100A6P06703 90 aa7.62□□□□□ -1.19
LIMCH1-219ENST00000514096 GIMD1P0DJR0 217 aa7.62□□□□□ -1.19
LIMCH1-219ENST00000514096 ATP1B2P14415 290 aaPredicted RBP7.62□□□□□ -1.19
LIMCH1-219ENST00000514096 PSMB5P28074 263 aa7.62□□□□□ -1.19
LIMCH1-219ENST00000514096 ETV5P41161 510 aa7.62□□□□□ -1.19
LIMCH1-219ENST00000514096 DPP6P42658 865 aa7.62□□□□□ -1.19
LIMCH1-219ENST00000514096 HADHBP55084 474 aaKnown RBP7.62□□□□□ -1.19
LIMCH1-219ENST00000514096 ZNF45Q02386 682 aa7.62□□□□□ -1.19
LIMCH1-219ENST00000514096 CHAF1BQ13112 559 aa7.62□□□□□ -1.19
LIMCH1-219ENST00000514096 ZNF267Q14586 743 aaPredicted RBP7.62□□□□□ -1.19
LIMCH1-219ENST00000514096 TGFBIQ15582 683 aa7.62□□□□□ -1.19
LIMCH1-219ENST00000514096 SF1Q15637 639 aaKnown RBP7.62□□□□□ -1.19
LIMCH1-219ENST00000514096 CCSMST1Q4G0I0 132 aa7.62□□□□□ -1.19
LIMCH1-219ENST00000514096 XKR5Q6UX68 686 aa7.62□□□□□ -1.19
LIMCH1-219ENST00000514096 LINC00523Q86TU6 105 aa7.62□□□□□ -1.19
LIMCH1-219ENST00000514096 NRROSQ86YC3 692 aa7.62□□□□□ -1.19
LIMCH1-219ENST00000514096 NXPE1Q8N323 547 aa7.62□□□□□ -1.19
LIMCH1-219ENST00000514096 ZNF565Q8N9K5 539 aa7.62□□□□□ -1.19
LIMCH1-219ENST00000514096 FAM13CQ8NE31 585 aa7.62□□□□□ -1.19
LIMCH1-219ENST00000514096 MCUQ8NE86 351 aa7.62□□□□□ -1.19
LIMCH1-219ENST00000514096 BAHD1Q8TBE0 780 aaPredicted RBP7.62□□□□□ -1.19
LIMCH1-219ENST00000514096 SERPINB12Q96P63 405 aa7.62□□□□□ -1.19
LIMCH1-219ENST00000514096 TM9SF2Q99805 663 aa7.62□□□□□ -1.19
LIMCH1-219ENST00000514096 LRRN3Q9H3W5 708 aa7.62□□□□□ -1.19
LIMCH1-219ENST00000514096 AP3M1Q9Y2T2 418 aa7.62□□□□□ -1.19
LIMCH1-219ENST00000514096 NEU2Q9Y3R4 380 aa7.62□□□□□ -1.19
LIMCH1-219ENST00000514096 LOXL2Q9Y4K0 774 aa7.62□□□□□ -1.19
LIMCH1-219ENST00000514096 LOC285095A0A1B0GVY8 99 aa7.62□□□□□ -1.19
LIMCH1-219ENST00000514096 SRRM3A6NNA2 597 aaPredicted RBP7.62□□□□□ -1.19
LIMCH1-219ENST00000514096 SCAMP2O15127 329 aaKnown RBP7.62□□□□□ -1.19
LIMCH1-219ENST00000514096 GYG2O15488 501 aa7.62□□□□□ -1.19
LIMCH1-219ENST00000514096 PCDHGA12O60330 932 aa7.62□□□□□ -1.19
LIMCH1-219ENST00000514096 TSC22D2O75157 780 aa7.62□□□□□ -1.19
LIMCH1-219ENST00000514096 PEX11AO75192 247 aa7.62□□□□□ -1.19
LIMCH1-219ENST00000514096 NDUFS6O75380 124 aaKnown RBP7.62□□□□□ -1.19
LIMCH1-219ENST00000514096 FAM155BO75949 473 aa7.62□□□□□ -1.19
LIMCH1-219ENST00000514096 F3P13726 295 aa7.62□□□□□ -1.19
LIMCH1-219ENST00000514096 STX2P32856 288 aa7.62□□□□□ -1.19
LIMCH1-219ENST00000514096 TRIM23P36406 574 aa7.62□□□□□ -1.19
LIMCH1-219ENST00000514096 FDFT1P37268 417 aa7.62□□□□□ -1.19
LIMCH1-219ENST00000514096 GLRBP48167 497 aa7.62□□□□□ -1.19
LIMCH1-219ENST00000514096 CSNK1DP48730 415 aa7.62□□□□□ -1.19
LIMCH1-219ENST00000514096 SCRN3Q0VDG4 424 aa7.62□□□□□ -1.19
LIMCH1-219ENST00000514096 TSTD2Q5T7W7 516 aa7.62□□□□□ -1.19
LIMCH1-219ENST00000514096 FAM205BPQ63HN1 556 aa7.62□□□□□ -1.19
LIMCH1-219ENST00000514096 LRRC69Q6ZNQ3 347 aa7.62□□□□□ -1.19
LIMCH1-219ENST00000514096 IGDCC3Q8IVU1 814 aa7.62□□□□□ -1.19
LIMCH1-219ENST00000514096 OXR1Q8N573 874 aa7.62□□□□□ -1.19
LIMCH1-219ENST00000514096 TRAM1L1Q8N609 369 aa7.62□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms