RNA–Protein interactions for RNA: ENST00000512632.5

LIMCH1-215, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 4,792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-215ENST00000512632 SLC6A14Q9UN76 642 aa8.94□□□□□ -0.98
LIMCH1-215ENST00000512632 ERVW-1Q9UQF0 538 aa8.94□□□□□ -0.98
LIMCH1-215ENST00000512632 CHD5Q8TDI0 1954 aa8.94□□□□□ -0.98
LIMCH1-215ENST00000512632 PLXNA3P51805 1871 aa8.94□□□□□ -0.98
LIMCH1-215ENST00000512632 AGRPO00253 132 aa8.94□□□□□ -0.98
LIMCH1-215ENST00000512632 OR56A5P0C7T3 313 aa8.94□□□□□ -0.98
LIMCH1-215ENST00000512632 PCYT1AP49585 367 aa8.94□□□□□ -0.98
LIMCH1-215ENST00000512632 SRSF11Q05519 484 aaKnown RBP8.94□□□□□ -0.98
LIMCH1-215ENST00000512632 RNF180Q86T96 592 aa8.94□□□□□ -0.98
LIMCH1-215ENST00000512632 FAM9CQ8IZT9 166 aa8.94□□□□□ -0.98
LIMCH1-215ENST00000512632 STX19Q8N4C7 294 aa8.94□□□□□ -0.98
LIMCH1-215ENST00000512632 C1orf52Q8N6N3 182 aaKnown RBP8.94□□□□□ -0.98
LIMCH1-215ENST00000512632 ASB11Q8WXH4 323 aa8.94□□□□□ -0.98
LIMCH1-215ENST00000512632 GGHQ92820 318 aa8.94□□□□□ -0.98
LIMCH1-215ENST00000512632 RETREG1Q9H6L5 497 aa8.94□□□□□ -0.98
LIMCH1-215ENST00000512632 MARCH7Q9H992 704 aa8.94□□□□□ -0.98
LIMCH1-215ENST00000512632 PCDHGB3Q9Y5G1 929 aa8.94□□□□□ -0.98
LIMCH1-215ENST00000512632 SNX8Q9Y5X2 465 aa8.94□□□□□ -0.98
LIMCH1-215ENST00000512632 OR2AG2A6NM03 316 aa8.94□□□□□ -0.98
LIMCH1-215ENST00000512632 GABRR3A8MPY1 467 aa8.94□□□□□ -0.98
LIMCH1-215ENST00000512632 TLL1O43897 1013 aa8.94□□□□□ -0.98
LIMCH1-215ENST00000512632 UPK1BO75841 260 aa8.94□□□□□ -0.98
LIMCH1-215ENST00000512632 ETHE1O95571 254 aa8.94□□□□□ -0.98
LIMCH1-215ENST00000512632 SERPINA4P29622 427 aa8.94□□□□□ -0.98
LIMCH1-215ENST00000512632 CD70P32970 193 aa8.94□□□□□ -0.98
LIMCH1-215ENST00000512632 CRATP43155 626 aa8.94□□□□□ -0.98
LIMCH1-215ENST00000512632 CDH12P55289 794 aa8.94□□□□□ -0.98
LIMCH1-215ENST00000512632 NAE1Q13564 534 aa8.94□□□□□ -0.98
LIMCH1-215ENST00000512632 IQCCQ4KMZ1 466 aa8.94□□□□□ -0.98
LIMCH1-215ENST00000512632 LRRC70Q7Z2Q7 622 aa8.94□□□□□ -0.98
LIMCH1-215ENST00000512632 DNAJB7Q7Z6W7 309 aaPredicted RBP8.94□□□□□ -0.98
LIMCH1-215ENST00000512632 CSGALNACT1Q8TDX6 532 aa8.94□□□□□ -0.98
LIMCH1-215ENST00000512632 IPCEF1Q8WWN9 437 aaPredicted RBP8.94□□□□□ -0.98
LIMCH1-215ENST00000512632 CLSTN3Q9BQT9 956 aa8.94□□□□□ -0.98
LIMCH1-215ENST00000512632 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP8.93□□□□□ -0.98
LIMCH1-215ENST00000512632 METTL15A6NJ78 407 aa8.93□□□□□ -0.98
LIMCH1-215ENST00000512632 TMEM88BA6NKF7 163 aa8.93□□□□□ -0.98
LIMCH1-215ENST00000512632 CLDN24A6NM45 220 aa8.93□□□□□ -0.98
LIMCH1-215ENST00000512632 PRRG1O14668 218 aa8.93□□□□□ -0.98
LIMCH1-215ENST00000512632 ITGA1P56199 1179 aa8.93□□□□□ -0.98
LIMCH1-215ENST00000512632 PTSQ03393 145 aa8.93□□□□□ -0.98
LIMCH1-215ENST00000512632 ELP6Q0PNE2 266 aa8.93□□□□□ -0.98
LIMCH1-215ENST00000512632 MTAPQ13126 283 aa8.93□□□□□ -0.98
LIMCH1-215ENST00000512632 TPRG1LQ5T0D9 272 aa8.93□□□□□ -0.98
LIMCH1-215ENST00000512632 LYPLAL1Q5VWZ2 237 aa8.93□□□□□ -0.98
LIMCH1-215ENST00000512632 RGMBQ6NW40 437 aa8.93□□□□□ -0.98
LIMCH1-215ENST00000512632 FAHD1Q6P587 224 aa8.93□□□□□ -0.98
LIMCH1-215ENST00000512632 SPATC1Q76KD6 591 aa8.93□□□□□ -0.98
LIMCH1-215ENST00000512632 CLIP4Q8N3C7 705 aa8.93□□□□□ -0.98
LIMCH1-215ENST00000512632 L3MBTL4Q8NA19 623 aa8.93□□□□□ -0.98
LIMCH1-215ENST00000512632 MINDY2Q8NBR6 621 aa8.93□□□□□ -0.98
LIMCH1-215ENST00000512632 CENPOQ9BU64 300 aa8.93□□□□□ -0.98
LIMCH1-215ENST00000512632 ZNF232Q9UNY5 417 aa8.93□□□□□ -0.98
LIMCH1-215ENST00000512632 YIPF1Q9Y548 306 aa8.93□□□□□ -0.98
LIMCH1-215ENST00000512632 PCDHB11Q9Y5F2 797 aa8.93□□□□□ -0.98
LIMCH1-215ENST00000512632 GNG14A0A1W2PPG7 69 aa8.93□□□□□ -0.98
LIMCH1-215ENST00000512632 E7EQ34 232 aa8.93□□□□□ -0.98
LIMCH1-215ENST00000512632 ETFAP13804 333 aa8.93□□□□□ -0.98
LIMCH1-215ENST00000512632 NR4A2P43354 598 aa8.93□□□□□ -0.98
LIMCH1-215ENST00000512632 KCNJ10P78508 379 aa8.93□□□□□ -0.98
LIMCH1-215ENST00000512632 GAB1Q13480 694 aa8.93□□□□□ -0.98
LIMCH1-215ENST00000512632 DOC2AQ14183 400 aa8.93□□□□□ -0.98
LIMCH1-215ENST00000512632 CCSMST1Q4G0I0 132 aa8.93□□□□□ -0.98
LIMCH1-215ENST00000512632 CPTPQ5TA50 214 aa8.93□□□□□ -0.98
LIMCH1-215ENST00000512632 SLC8B1Q6J4K2 584 aa8.93□□□□□ -0.98
LIMCH1-215ENST00000512632 ERICH5Q6P6B1 374 aa8.93□□□□□ -0.98
LIMCH1-215ENST00000512632 ZNF852Q6ZMS4 543 aa8.93□□□□□ -0.98
LIMCH1-215ENST00000512632 LINC00299Q6ZSB3 139 aa8.93□□□□□ -0.98
LIMCH1-215ENST00000512632 TSEN54Q7Z6J9 526 aaKnown RBP8.93□□□□□ -0.98
LIMCH1-215ENST00000512632 SCAIQ8N9R8 606 aa8.93□□□□□ -0.98
LIMCH1-215ENST00000512632 TET1Q8NFU7 2136 aa8.93□□□□□ -0.98
LIMCH1-215ENST00000512632 AUTS2Q8WXX7 1259 aa8.93□□□□□ -0.98
LIMCH1-215ENST00000512632 HRASLS5Q96KN8 279 aa8.93□□□□□ -0.98
LIMCH1-215ENST00000512632 NIPSNAP1Q9BPW8 284 aa8.93□□□□□ -0.98
LIMCH1-215ENST00000512632 ADPRHL2Q9NX46 363 aa8.93□□□□□ -0.98
LIMCH1-215ENST00000512632 AGAP5A6NIR3 686 aa8.93□□□□□ -0.98
LIMCH1-215ENST00000512632 DSCR3O14972 297 aa8.93□□□□□ -0.98
LIMCH1-215ENST00000512632 PTHP01270 115 aa8.93□□□□□ -0.98
LIMCH1-215ENST00000512632 ANXA4P09525 319 aaPredicted RBP8.93□□□□□ -0.98
LIMCH1-215ENST00000512632 SLC6A12P48065 614 aa8.93□□□□□ -0.98
LIMCH1-215ENST00000512632 LMAN2Q12907 356 aa8.93□□□□□ -0.98
LIMCH1-215ENST00000512632 FADDQ13158 208 aa8.93□□□□□ -0.98
LIMCH1-215ENST00000512632 SF3B4Q15427 424 aaKnown RBP eCLIP8.93□□□□□ -0.98
LIMCH1-215ENST00000512632 ARMCX4Q5H9R4 360 aa8.93□□□□□ -0.98
LIMCH1-215ENST00000512632 RNF165Q6ZSG1 346 aa8.93□□□□□ -0.98
LIMCH1-215ENST00000512632 TPRG1Q6ZUI0 275 aa8.93□□□□□ -0.98
LIMCH1-215ENST00000512632 AMER2Q8N7J2 671 aa8.93□□□□□ -0.98
LIMCH1-215ENST00000512632 OR10G2Q8NGC3 310 aa8.93□□□□□ -0.98
LIMCH1-215ENST00000512632 ZNF675Q8TD23 568 aa8.93□□□□□ -0.98
LIMCH1-215ENST00000512632 C2orf15Q8WU43 125 aaKnown RBP8.93□□□□□ -0.98
LIMCH1-215ENST00000512632 GTPBP3Q969Y2 492 aaKnown RBP8.93□□□□□ -0.98
LIMCH1-215ENST00000512632 CORO1BQ9BR76 489 aa8.93□□□□□ -0.98
LIMCH1-215ENST00000512632 YIPF2Q9BWQ6 316 aa8.93□□□□□ -0.98
LIMCH1-215ENST00000512632 CDADC1Q9BWV3 514 aa8.93□□□□□ -0.98
LIMCH1-215ENST00000512632 MMP27Q9H306 513 aa8.93□□□□□ -0.98
LIMCH1-215ENST00000512632 PSORS1C1Q9UIG5 152 aa8.93□□□□□ -0.98
LIMCH1-215ENST00000512632 TMPRSS11EQ9UL52 423 aa8.93□□□□□ -0.98
LIMCH1-215ENST00000512632 TMED5Q9Y3A6 229 aa8.93□□□□□ -0.98
LIMCH1-215ENST00000512632 PSMD11O00231 422 aa8.93□□□□□ -0.98
LIMCH1-215ENST00000512632 RFPL2O75678 378 aa8.93□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms