RNA–Protein interactions for RNA: ENST00000492506.1

HDAC3-213, Transcript of histone deacetylase 3, humanhuman

TSL 2

Gene HDAC3, Length 830 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-213ENST00000492506 SPAG7O75391 227 aa12.59□□□□□ -0.39
HDAC3-213ENST00000492506 SRP72O76094 671 aaKnown RBP12.59□□□□□ -0.39
HDAC3-213ENST00000492506 TGDSO95455 350 aa12.59□□□□□ -0.39
HDAC3-213ENST00000492506 UBTFL6P0CB48 400 aaPredicted RBP12.59□□□□□ -0.39
HDAC3-213ENST00000492506 UQCRBP14927 111 aa12.59□□□□□ -0.39
HDAC3-213ENST00000492506 ITGAXP20702 1163 aa12.59□□□□□ -0.39
HDAC3-213ENST00000492506 CHN2P52757 468 aa12.59□□□□□ -0.39
HDAC3-213ENST00000492506 TUBA4AP68366 448 aa12.59□□□□□ -0.39
HDAC3-213ENST00000492506 CDC16Q13042 620 aa12.59□□□□□ -0.39
HDAC3-213ENST00000492506 DEFB110Q30KQ9 67 aa12.59□□□□□ -0.39
HDAC3-213ENST00000492506 P3H1Q32P28 736 aa12.59□□□□□ -0.39
HDAC3-213ENST00000492506 NKAIN1Q4KMZ8 207 aa12.59□□□□□ -0.39
HDAC3-213ENST00000492506 ACSBG2Q5FVE4 666 aa12.59□□□□□ -0.39
HDAC3-213ENST00000492506 PRAMEF13Q5VWM6 474 aa12.59□□□□□ -0.39
HDAC3-213ENST00000492506 ZNF324BQ6AW86 544 aaPredicted RBP12.59□□□□□ -0.39
HDAC3-213ENST00000492506 THOC7Q6I9Y2 204 aaKnown RBP12.59□□□□□ -0.39
HDAC3-213ENST00000492506 C11orf63Q6NUN7 778 aa12.59□□□□□ -0.39
HDAC3-213ENST00000492506 DHRS4L2Q6PKH6 230 aa12.59□□□□□ -0.39
HDAC3-213ENST00000492506 IZUMO2Q6UXV1 221 aa12.59□□□□□ -0.39
HDAC3-213ENST00000492506 Q6ZNX1 250 aa12.59□□□□□ -0.39
HDAC3-213ENST00000492506 NLRP9Q7RTR0 991 aa12.59□□□□□ -0.39
HDAC3-213ENST00000492506 C19orf47Q8N9M1 422 aaKnown RBP12.59□□□□□ -0.39
HDAC3-213ENST00000492506 CATSPER1Q8NEC5 780 aa12.59□□□□□ -0.39
HDAC3-213ENST00000492506 MGARPQ8TDB4 240 aa12.59□□□□□ -0.39
HDAC3-213ENST00000492506 TRAF3IP1Q8TDR0 691 aaPredicted RBP12.59□□□□□ -0.39
HDAC3-213ENST00000492506 GRK7Q8WTQ7 553 aa12.59□□□□□ -0.39
HDAC3-213ENST00000492506 ITLN2Q8WWU7 325 aaPredicted RBP12.59□□□□□ -0.39
HDAC3-213ENST00000492506 NACC2Q96BF6 587 aa12.59□□□□□ -0.39
HDAC3-213ENST00000492506 FCRL5Q96RD9 977 aa12.59□□□□□ -0.39
HDAC3-213ENST00000492506 PACSIN1Q9BY11 444 aa12.59□□□□□ -0.39
HDAC3-213ENST00000492506 CADM1Q9BY67 442 aaKnown RBP12.59□□□□□ -0.39
HDAC3-213ENST00000492506 RUBCNLQ9H714 662 aa12.59□□□□□ -0.39
HDAC3-213ENST00000492506 ASB8Q9H765 288 aa12.59□□□□□ -0.39
HDAC3-213ENST00000492506 COG4Q9H9E3 785 aa12.59□□□□□ -0.39
HDAC3-213ENST00000492506 SAE1Q9UBE0 346 aaPredicted RBP12.59□□□□□ -0.39
HDAC3-213ENST00000492506 PACSIN2Q9UNF0 486 aaPredicted RBP12.59□□□□□ -0.39
HDAC3-213ENST00000492506 ICKQ9UPZ9 632 aa12.59□□□□□ -0.39
HDAC3-213ENST00000492506 SNX24Q9Y343 169 aa12.59□□□□□ -0.39
HDAC3-213ENST00000492506 KLF2Q9Y5W3 355 aaPredicted RBP12.59□□□□□ -0.39
HDAC3-213ENST00000492506 ARL5AQ9Y689 179 aa12.59□□□□□ -0.39
HDAC3-213ENST00000492506 CACNA1CQ13936 2221 aa12.58□□□□□ -0.39
HDAC3-213ENST00000492506 SH3PXD2BA1X283 911 aa12.58□□□□□ -0.4
HDAC3-213ENST00000492506 SMIM23A6NLE4 172 aa12.58□□□□□ -0.4
HDAC3-213ENST00000492506 STX7O15400 261 aaKnown RBP12.58□□□□□ -0.4
HDAC3-213ENST00000492506 SUPT3HO75486 399 aa12.58□□□□□ -0.4
HDAC3-213ENST00000492506 KRT36O76013 467 aa12.58□□□□□ -0.4
HDAC3-213ENST00000492506 TTC4O95801 387 aa12.58□□□□□ -0.4
HDAC3-213ENST00000492506 ATXN8OSP0DMR3 200 aa12.58□□□□□ -0.4
HDAC3-213ENST00000492506 ANPEPP15144 967 aa12.58□□□□□ -0.4
HDAC3-213ENST00000492506 UGT2B7P16662 529 aa12.58□□□□□ -0.4
HDAC3-213ENST00000492506 ZNF12P17014 697 aa12.58□□□□□ -0.4
HDAC3-213ENST00000492506 MMP11P24347 488 aa12.58□□□□□ -0.4
HDAC3-213ENST00000492506 PDHA2P29803 388 aa12.58□□□□□ -0.4
HDAC3-213ENST00000492506 TDGF1P3P51864 188 aa12.58□□□□□ -0.4
HDAC3-213ENST00000492506 OTUD4Q01804 1114 aaKnown RBP12.58□□□□□ -0.4
HDAC3-213ENST00000492506 BOP1Q14137 746 aaKnown RBP12.58□□□□□ -0.4
HDAC3-213ENST00000492506 AGAP7PQ5VUJ5 663 aa12.58□□□□□ -0.4
HDAC3-213ENST00000492506 RPUSD3Q6P087 351 aaKnown RBP12.58□□□□□ -0.4
HDAC3-213ENST00000492506 KIRREL2Q6UWL6 708 aa12.58□□□□□ -0.4
HDAC3-213ENST00000492506 CLNKQ7Z7G1 428 aa12.58□□□□□ -0.4
HDAC3-213ENST00000492506 ZNF655Q8N720 491 aaPredicted RBP12.58□□□□□ -0.4
HDAC3-213ENST00000492506 OR6Y1Q8NGX8 325 aa12.58□□□□□ -0.4
HDAC3-213ENST00000492506 NRG4Q8WWG1 115 aa12.58□□□□□ -0.4
HDAC3-213ENST00000492506 ABTB1Q969K4 478 aaPredicted RBP12.58□□□□□ -0.4
HDAC3-213ENST00000492506 AGAP4Q96P64 663 aa12.58□□□□□ -0.4
HDAC3-213ENST00000492506 OR2A14Q96R47 310 aa12.58□□□□□ -0.4
HDAC3-213ENST00000492506 TRIM56Q9BRZ2 755 aaKnown RBP12.58□□□□□ -0.4
HDAC3-213ENST00000492506 MVB12BQ9H7P6 319 aa12.58□□□□□ -0.4
HDAC3-213ENST00000492506 PALMDQ9NP74 551 aa12.58□□□□□ -0.4
HDAC3-213ENST00000492506 FKBPLQ9UIM3 349 aa12.58□□□□□ -0.4
HDAC3-213ENST00000492506 SBDSQ9Y3A5 250 aaKnown RBP eCLIP12.58□□□□□ -0.4
HDAC3-213ENST00000492506 HS3ST3B1Q9Y662 390 aa12.58□□□□□ -0.4
HDAC3-213ENST00000492506 PCDH17O14917 1159 aa12.57□□□□□ -0.4
HDAC3-213ENST00000492506 JRKO75564 520 aa12.57□□□□□ -0.4
HDAC3-213ENST00000492506 ONECUT2O95948 504 aa12.57□□□□□ -0.4
HDAC3-213ENST00000492506 PTGER4P35408 488 aa12.57□□□□□ -0.4
HDAC3-213ENST00000492506 HSPA13P48723 471 aa12.57□□□□□ -0.4
HDAC3-213ENST00000492506 NUP107P57740 925 aa12.57□□□□□ -0.4
HDAC3-213ENST00000492506 DYNLT1P63172 113 aa12.57□□□□□ -0.4
HDAC3-213ENST00000492506 TMPRSS15P98073 1019 aa12.57□□□□□ -0.4
HDAC3-213ENST00000492506 Q0VFX4 171 aa12.57□□□□□ -0.4
HDAC3-213ENST00000492506 PRKG2Q13237 762 aa12.57□□□□□ -0.4
HDAC3-213ENST00000492506 MSLNQ13421 630 aaPredicted RBP12.57□□□□□ -0.4
HDAC3-213ENST00000492506 TLR1Q15399 786 aa12.57□□□□□ -0.4
HDAC3-213ENST00000492506 ANKRD20A4Q4UJ75 823 aa12.57□□□□□ -0.4
HDAC3-213ENST00000492506 TMEM53Q6P2H8 277 aa12.57□□□□□ -0.4
HDAC3-213ENST00000492506 ZNF449Q6P9G9 518 aa12.57□□□□□ -0.4
HDAC3-213ENST00000492506 PACS1Q6VY07 963 aa12.57□□□□□ -0.4
HDAC3-213ENST00000492506 UNC5AQ6ZN44 842 aa12.57□□□□□ -0.4
HDAC3-213ENST00000492506 GDF7Q7Z4P5 450 aa12.57□□□□□ -0.4
HDAC3-213ENST00000492506 RFX6Q8HWS3 928 aa12.57□□□□□ -0.4
HDAC3-213ENST00000492506 ZNF567Q8N184 647 aa12.57□□□□□ -0.4
HDAC3-213ENST00000492506 DNAJC22Q8N4W6 341 aa12.57□□□□□ -0.4
HDAC3-213ENST00000492506 IPMKQ8NFU5 416 aa12.57□□□□□ -0.4
HDAC3-213ENST00000492506 OR4K2Q8NGD2 314 aa12.57□□□□□ -0.4
HDAC3-213ENST00000492506 TBRG4Q969Z0 631 aaKnown RBP eCLIP12.57□□□□□ -0.4
HDAC3-213ENST00000492506 PTCD3Q96EY7 689 aaKnown RBP12.57□□□□□ -0.4
HDAC3-213ENST00000492506 SPSB2Q99619 263 aa12.57□□□□□ -0.4
HDAC3-213ENST00000492506 HGH1Q9BTY7 390 aa12.57□□□□□ -0.4
HDAC3-213ENST00000492506 MAK16Q9BXY0 300 aaKnown RBP12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 79.9 ms