RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 SCAMP2O15127 329 aaKnown RBP17.32■□□□□ 0.36
VIM-206ENST00000487938 TSPAN6O43657 245 aa17.32■□□□□ 0.36
VIM-206ENST00000487938 PRMT3O60678 531 aa17.32■□□□□ 0.36
VIM-206ENST00000487938 MYO1DO94832 1006 aa17.32■□□□□ 0.36
VIM-206ENST00000487938 SLCO2B1O94956 709 aa17.32■□□□□ 0.36
VIM-206ENST00000487938 TGFBR1P36897 503 aa17.32■□□□□ 0.36
VIM-206ENST00000487938 HNRNPFP52597 415 aaKnown RBP17.32■□□□□ 0.36
VIM-206ENST00000487938 CTSCP53634 463 aa17.32■□□□□ 0.36
VIM-206ENST00000487938 NCS1P62166 190 aa17.32■□□□□ 0.36
VIM-206ENST00000487938 NPRL3Q12980 569 aa17.32■□□□□ 0.36
VIM-206ENST00000487938 KIAA1614Q5VZ46 1190 aa17.32■□□□□ 0.36
VIM-206ENST00000487938 TSPYL5Q86VY4 417 aaPredicted RBP17.32■□□□□ 0.36
VIM-206ENST00000487938 NAGSQ8N159 534 aa17.32■□□□□ 0.36
VIM-206ENST00000487938 LMNTD1Q8N9Z9 388 aa17.32■□□□□ 0.36
VIM-206ENST00000487938 SORCS1Q8WY21 1168 aa17.32■□□□□ 0.36
VIM-206ENST00000487938 CLP1Q92989 425 aaKnown RBP17.32■□□□□ 0.36
VIM-206ENST00000487938 VWCEQ96DN2 955 aa17.32■□□□□ 0.36
VIM-206ENST00000487938 SH3BP4Q9P0V3 963 aa17.32■□□□□ 0.36
VIM-206ENST00000487938 STOX2Q9P2F5 926 aaPredicted RBP17.32■□□□□ 0.36
VIM-206ENST00000487938 ZNF451Q9Y4E5 1061 aa17.32■□□□□ 0.36
VIM-206ENST00000487938 HSPE1-MOB4S4R3N1 261 aa17.32■□□□□ 0.36
VIM-206ENST00000487938 PRRC2BQ5JSZ5 2229 aaKnown RBP17.32■□□□□ 0.36
VIM-206ENST00000487938 RGS10O43665 173 aa17.32■□□□□ 0.36
VIM-206ENST00000487938 NADKO95544 446 aaPredicted RBP17.32■□□□□ 0.36
VIM-206ENST00000487938 VIPP01282 170 aa17.32■□□□□ 0.36
VIM-206ENST00000487938 GSTM1P09488 218 aa17.32■□□□□ 0.36
VIM-206ENST00000487938 KRT20P35900 424 aa17.32■□□□□ 0.36
VIM-206ENST00000487938 BCAP31P51572 246 aa17.32■□□□□ 0.36
VIM-206ENST00000487938 RAB15P59190 212 aa17.32■□□□□ 0.36
VIM-206ENST00000487938 KCNJ10P78508 379 aa17.32■□□□□ 0.36
VIM-206ENST00000487938 ZNF846Q147U1 533 aa17.32■□□□□ 0.36
VIM-206ENST00000487938 IQCCQ4KMZ1 466 aa17.32■□□□□ 0.36
VIM-206ENST00000487938 SYTL3Q4VX76 610 aa17.32■□□□□ 0.36
VIM-206ENST00000487938 ARSIQ5FYB1 569 aa17.32■□□□□ 0.36
VIM-206ENST00000487938 PERM1Q5SV97 790 aa17.32■□□□□ 0.36
VIM-206ENST00000487938 ANGPTL8Q6UXH0 198 aa17.32■□□□□ 0.36
VIM-206ENST00000487938 RAVER1Q8IY67 606 aaKnown RBP17.32■□□□□ 0.36
VIM-206ENST00000487938 CYB5D2Q8WUJ1 264 aa17.32■□□□□ 0.36
VIM-206ENST00000487938 ZNF689Q96CS4 500 aaPredicted RBP17.32■□□□□ 0.36
VIM-206ENST00000487938 C7orf34Q96L11 122 aa17.32■□□□□ 0.36
VIM-206ENST00000487938 RUBCNLQ9H714 662 aa17.32■□□□□ 0.36
VIM-206ENST00000487938 HCFC1R1Q9NWW0 138 aa17.32■□□□□ 0.36
VIM-206ENST00000487938 ERVW-1Q9UQF0 538 aa17.32■□□□□ 0.36
VIM-206ENST00000487938 SH3GLB1Q9Y371 365 aa17.32■□□□□ 0.36
VIM-206ENST00000487938 TRIM17Q9Y577 477 aa17.32■□□□□ 0.36
VIM-206ENST00000487938 PCDHGA12O60330 932 aa17.31■□□□□ 0.36
VIM-206ENST00000487938 WBP4O75554 376 aaKnown RBP17.31■□□□□ 0.36
VIM-206ENST00000487938 LEFTY1O75610 366 aa17.31■□□□□ 0.36
VIM-206ENST00000487938 SLC16A8O95907 504 aa17.31■□□□□ 0.36
VIM-206ENST00000487938 GBAP04062 536 aa17.31■□□□□ 0.36
VIM-206ENST00000487938 PABPC1P11940 636 aaKnown RBP17.31■□□□□ 0.36
VIM-206ENST00000487938 TNFRSF1BP20333 461 aa17.31■□□□□ 0.36
VIM-206ENST00000487938 PBLDP30039 288 aaPredicted RBP17.31■□□□□ 0.36
VIM-206ENST00000487938 RRM2P31350 389 aa17.31■□□□□ 0.36
VIM-206ENST00000487938 CCR2P41597 374 aa17.31■□□□□ 0.36
VIM-206ENST00000487938 ITGA1P56199 1179 aa17.31■□□□□ 0.36
VIM-206ENST00000487938 CXCR4P61073 352 aa17.31■□□□□ 0.36
VIM-206ENST00000487938 RELAQ04206 551 aa17.31■□□□□ 0.36
VIM-206ENST00000487938 FPGSQ05932 587 aa17.31■□□□□ 0.36
VIM-206ENST00000487938 GAB1Q13480 694 aa17.31■□□□□ 0.36
VIM-206ENST00000487938 PAGE2BQ5JRK9 111 aa17.31■□□□□ 0.36
VIM-206ENST00000487938 SYT6Q5T7P8 510 aaPredicted RBP17.31■□□□□ 0.36
VIM-206ENST00000487938 GPR153Q6NV75 609 aa17.31■□□□□ 0.36
VIM-206ENST00000487938 NEK10Q6ZWH5 1172 aa17.31■□□□□ 0.36
VIM-206ENST00000487938 AHSA2Q719I0 299 aa17.31■□□□□ 0.36
VIM-206ENST00000487938 P2RY8Q86VZ1 359 aa17.31■□□□□ 0.36
VIM-206ENST00000487938 RPL3LQ92901 407 aaKnown RBP17.31■□□□□ 0.36
VIM-206ENST00000487938 C11orf24Q96F05 449 aaPredicted RBP17.31■□□□□ 0.36
VIM-206ENST00000487938 MAGEB10Q96LZ2 347 aaPredicted RBP17.31■□□□□ 0.36
VIM-206ENST00000487938 SAMD11Q96NU1 681 aa17.31■□□□□ 0.36
VIM-206ENST00000487938 KCNC2Q96PR1 638 aa17.31■□□□□ 0.36
VIM-206ENST00000487938 LINC00597Q9H2U6 94 aa17.31■□□□□ 0.36
VIM-206ENST00000487938 ACOT13Q9NPJ3 140 aa17.31■□□□□ 0.36
VIM-206ENST00000487938 RAPGEFL1Q9UHV5 662 aa17.31■□□□□ 0.36
VIM-206ENST00000487938 PNMA8BQ9ULN7 279 aaPredicted RBP17.31■□□□□ 0.36
VIM-206ENST00000487938 B3GNT3Q9Y2A9 372 aa17.31■□□□□ 0.36
VIM-206ENST00000487938 GNG14A0A1W2PPG7 69 aa17.31■□□□□ 0.36
VIM-206ENST00000487938 CCL16O15467 120 aa17.31■□□□□ 0.36
VIM-206ENST00000487938 SUV39H1O43463 412 aa17.31■□□□□ 0.36
VIM-206ENST00000487938 UGDHO60701 494 aa17.31■□□□□ 0.36
VIM-206ENST00000487938 PSIP1O75475 530 aaKnown RBP17.31■□□□□ 0.36
VIM-206ENST00000487938 C9P02748 559 aa17.31■□□□□ 0.36
VIM-206ENST00000487938 OPN1SWP03999 348 aa17.31■□□□□ 0.36
VIM-206ENST00000487938 PDHA2P29803 388 aa17.31■□□□□ 0.36
VIM-206ENST00000487938 VIPR1P32241 457 aa17.31■□□□□ 0.36
VIM-206ENST00000487938 TLE2Q04725 743 aa17.31■□□□□ 0.36
VIM-206ENST00000487938 TSTA3Q13630 321 aaPredicted RBP17.31■□□□□ 0.36
VIM-206ENST00000487938 VEZF1Q14119 521 aa17.31■□□□□ 0.36
VIM-206ENST00000487938 RGNQ15493 299 aa17.31■□□□□ 0.36
VIM-206ENST00000487938 GRHL2Q6ISB3 625 aa17.31■□□□□ 0.36
VIM-206ENST00000487938 RASGEF1AQ8N9B8 481 aa17.31■□□□□ 0.36
VIM-206ENST00000487938 OR7G3Q8NG95 312 aa17.31■□□□□ 0.36
VIM-206ENST00000487938 HUS1BQ8NHY5 278 aa17.31■□□□□ 0.36
VIM-206ENST00000487938 TMEM159Q96B96 161 aa17.31■□□□□ 0.36
VIM-206ENST00000487938 PKP4Q99569 1192 aa17.31■□□□□ 0.36
VIM-206ENST00000487938 TMEM184CQ9NVA4 438 aa17.31■□□□□ 0.36
VIM-206ENST00000487938 PMF1-BGLAPU3KQ54 211 aa17.31■□□□□ 0.36
VIM-206ENST00000487938 C1orf226A1L170 272 aa17.3■□□□□ 0.36
VIM-206ENST00000487938 MGAT4DA6NG13 374 aa17.3■□□□□ 0.36
VIM-206ENST00000487938 ZBBXA8MT70 800 aa17.3■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms