RNA–Protein interactions for RNA: ENST00000415083.6

SS18-203, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SS18, Length 3,414 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-203ENST00000415083 GGHQ92820 318 aa9.52□□□□□ -0.89
SS18-203ENST00000415083 PANX1Q96RD7 426 aa9.52□□□□□ -0.89
SS18-203ENST00000415083 SDHCQ99643 169 aaPredicted RBP9.52□□□□□ -0.89
SS18-203ENST00000415083 C19orf43Q9BQ61 176 aa9.52□□□□□ -0.89
SS18-203ENST00000415083 TMEM175Q9BSA9 504 aa9.52□□□□□ -0.89
SS18-203ENST00000415083 MIR1-1HGQ9H1L0 117 aa9.52□□□□□ -0.89
SS18-203ENST00000415083 RAD18Q9NS91 495 aa9.52□□□□□ -0.89
SS18-203ENST00000415083 CAB39Q9Y376 341 aaPredicted RBP9.52□□□□□ -0.89
SS18-203ENST00000415083 PCDHGA2Q9Y5H1 932 aa9.52□□□□□ -0.89
SS18-203ENST00000415083 PTPRSQ13332 1948 aa9.52□□□□□ -0.89
SS18-203ENST00000415083 TCF20Q9UGU0 1960 aaKnown RBP9.52□□□□□ -0.89
SS18-203ENST00000415083 METTL15A6NJ78 407 aa9.52□□□□□ -0.89
SS18-203ENST00000415083 SOCS5O75159 536 aa9.52□□□□□ -0.89
SS18-203ENST00000415083 HLA-EP13747 358 aa9.52□□□□□ -0.89
SS18-203ENST00000415083 CD36P16671 472 aa9.52□□□□□ -0.89
SS18-203ENST00000415083 GADD45AP24522 165 aa9.52□□□□□ -0.89
SS18-203ENST00000415083 HOXD12P35452 270 aa9.52□□□□□ -0.89
SS18-203ENST00000415083 KIR3DL1P43629 444 aa9.52□□□□□ -0.89
SS18-203ENST00000415083 C21orf58P58505 322 aa9.52□□□□□ -0.89
SS18-203ENST00000415083 OCA2Q04671 838 aa9.52□□□□□ -0.89
SS18-203ENST00000415083 CHIT1Q13231 466 aa9.52□□□□□ -0.89
SS18-203ENST00000415083 CAMK2GQ13555 558 aaPredicted RBP9.52□□□□□ -0.89
SS18-203ENST00000415083 RFX4Q33E94 735 aa9.52□□□□□ -0.89
SS18-203ENST00000415083 DDX59Q5T1V6 619 aaKnown RBP eCLIP9.52□□□□□ -0.89
SS18-203ENST00000415083 GPR153Q6NV75 609 aa9.52□□□□□ -0.89
SS18-203ENST00000415083 SLC7A5P1Q8MH63 180 aa9.52□□□□□ -0.89
SS18-203ENST00000415083 NLGN4XQ8N0W4 816 aa9.52□□□□□ -0.89
SS18-203ENST00000415083 HJURPQ8NCD3 748 aaPredicted RBP9.52□□□□□ -0.89
SS18-203ENST00000415083 PSD4Q8NDX1 1056 aa9.52□□□□□ -0.89
SS18-203ENST00000415083 DNAJB8Q8NHS0 232 aa9.52□□□□□ -0.89
SS18-203ENST00000415083 HPS1Q92902 700 aa9.52□□□□□ -0.89
SS18-203ENST00000415083 SCAMP4Q969E2 229 aa9.52□□□□□ -0.89
SS18-203ENST00000415083 IGSF21Q96ID5 467 aa9.52□□□□□ -0.89
SS18-203ENST00000415083 CDADC1Q9BWV3 514 aa9.52□□□□□ -0.89
SS18-203ENST00000415083 NXF2Q9GZY0 626 aaKnown RBP9.52□□□□□ -0.89
SS18-203ENST00000415083 ELOVL6Q9H5J4 265 aa9.52□□□□□ -0.89
SS18-203ENST00000415083 PSORS1C1Q9UIG5 152 aa9.52□□□□□ -0.89
SS18-203ENST00000415083 SAMHD1Q9Y3Z3 626 aaKnown RBP9.52□□□□□ -0.89
SS18-203ENST00000415083 LYVE1Q9Y5Y7 322 aa9.52□□□□□ -0.89
SS18-203ENST00000415083 HSPE1-MOB4S4R3N1 261 aa9.52□□□□□ -0.89
SS18-203ENST00000415083 ARHGEF33A8MVX0 844 aa9.52□□□□□ -0.89
SS18-203ENST00000415083 FADS2P1A8MWK0 482 aa9.52□□□□□ -0.89
SS18-203ENST00000415083 RGS10O43665 173 aa9.52□□□□□ -0.89
SS18-203ENST00000415083 CPSF4O95639 269 aaKnown RBP9.52□□□□□ -0.89
SS18-203ENST00000415083 OPN1SWP03999 348 aa9.52□□□□□ -0.89
SS18-203ENST00000415083 CBSLP0DN79 551 aa9.52□□□□□ -0.89
SS18-203ENST00000415083 JUPP14923 745 aa9.52□□□□□ -0.89
SS18-203ENST00000415083 GJA1P17302 382 aa9.52□□□□□ -0.89
SS18-203ENST00000415083 HLA-FP30511 346 aa9.52□□□□□ -0.89
SS18-203ENST00000415083 CBSP35520 551 aa9.52□□□□□ -0.89
SS18-203ENST00000415083 CDH18Q13634 790 aa9.52□□□□□ -0.89
SS18-203ENST00000415083 PROX2Q3B8N5 592 aa9.52□□□□□ -0.89
SS18-203ENST00000415083 ZNF621Q6ZSS3 439 aa9.52□□□□□ -0.89
SS18-203ENST00000415083 PAGE2Q7Z2X7 111 aa9.52□□□□□ -0.89
SS18-203ENST00000415083 HS6ST3Q8IZP7 471 aa9.52□□□□□ -0.89
SS18-203ENST00000415083 PUM2Q8TB72 1066 aaKnown RBP eCLIP9.52□□□□□ -0.892e-14■■□□□ 11.4
SS18-203ENST00000415083 NELL1Q92832 810 aa9.52□□□□□ -0.89
SS18-203ENST00000415083 BCL7BQ9BQE9 202 aa9.52□□□□□ -0.89
SS18-203ENST00000415083 ABCB8Q9NUT2 735 aa9.52□□□□□ -0.89
SS18-203ENST00000415083 SZT2Q5T011 3432 aa9.51□□□□□ -0.89
SS18-203ENST00000415083 MAGEB17A8MXT2 336 aa9.51□□□□□ -0.89
SS18-203ENST00000415083 SEMA7AO75326 666 aa9.51□□□□□ -0.89
SS18-203ENST00000415083 IDSP22304 550 aa9.51□□□□□ -0.89
SS18-203ENST00000415083 RRM2P31350 389 aa9.51□□□□□ -0.89
SS18-203ENST00000415083 TRPC1P48995 793 aa9.51□□□□□ -0.89
SS18-203ENST00000415083 PXNP49023 591 aaPredicted RBP9.51□□□□□ -0.89
SS18-203ENST00000415083 NUDT6P53370 316 aa9.51□□□□□ -0.89
SS18-203ENST00000415083 EEF1A2Q05639 463 aaKnown RBP9.51□□□□□ -0.89
SS18-203ENST00000415083 DOC2AQ14183 400 aa9.51□□□□□ -0.89
SS18-203ENST00000415083 PLEKHG6Q3KR16 790 aa9.51□□□□□ -0.89
SS18-203ENST00000415083 ZNF658BQ4V348 819 aaPredicted RBP9.51□□□□□ -0.89
SS18-203ENST00000415083 TMEM53Q6P2H8 277 aa9.51□□□□□ -0.89
SS18-203ENST00000415083 TPRG1Q6ZUI0 275 aa9.51□□□□□ -0.89
SS18-203ENST00000415083 OTOP2Q7RTS6 562 aa9.51□□□□□ -0.89
SS18-203ENST00000415083 RNF180Q86T96 592 aa9.51□□□□□ -0.89
SS18-203ENST00000415083 SLC5A8Q8N695 610 aa9.51□□□□□ -0.89
SS18-203ENST00000415083 NRTNQ99748 197 aa9.51□□□□□ -0.89
SS18-203ENST00000415083 WDR12Q9GZL7 423 aaKnown RBP9.51□□□□□ -0.89
SS18-203ENST00000415083 TPT1P8Q9HAU6 139 aa9.51□□□□□ -0.89
SS18-203ENST00000415083 HMG20AQ9NP66 347 aa9.51□□□□□ -0.89
SS18-203ENST00000415083 KRT84Q9NSB2 600 aa9.51□□□□□ -0.89
SS18-203ENST00000415083 GIN1Q9NXP7 522 aa9.51□□□□□ -0.89
SS18-203ENST00000415083 PCDHB11Q9Y5F2 797 aa9.51□□□□□ -0.89
SS18-203ENST00000415083 CFAP20Q9Y6A4 193 aaKnown RBP9.51□□□□□ -0.89
SS18-203ENST00000415083 A0A0C4DFX4 3053 aa9.51□□□□□ -0.89
SS18-203ENST00000415083 HTR3EA5X5Y0 456 aa9.51□□□□□ -0.89
SS18-203ENST00000415083 CLDN24A6NM45 220 aa9.51□□□□□ -0.89
SS18-203ENST00000415083 FAM20BO75063 409 aa9.51□□□□□ -0.89
SS18-203ENST00000415083 PTHP01270 115 aa9.51□□□□□ -0.89
SS18-203ENST00000415083 OR1E2P47887 323 aa9.51□□□□□ -0.89
SS18-203ENST00000415083 SPINT3P49223 89 aa9.51□□□□□ -0.89
SS18-203ENST00000415083 ALDH7A1P49419 539 aaKnown RBP9.51□□□□□ -0.89
SS18-203ENST00000415083 RGNQ15493 299 aa9.51□□□□□ -0.89
SS18-203ENST00000415083 GPR162Q16538 588 aa9.51□□□□□ -0.89
SS18-203ENST00000415083 CDKL4Q5MAI5 379 aa9.51□□□□□ -0.89
SS18-203ENST00000415083 STEAP3Q658P3 488 aa9.51□□□□□ -0.89
SS18-203ENST00000415083 LINC00299Q6ZSB3 139 aa9.51□□□□□ -0.89
SS18-203ENST00000415083 HSD11B1LQ7Z5J1 315 aa9.51□□□□□ -0.89
SS18-203ENST00000415083 MMP21Q8N119 569 aa9.51□□□□□ -0.89
SS18-203ENST00000415083 OR2AP1Q8NGE2 309 aa9.51□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms