RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 UBA1P22314 1058 aaKnown RBP3.9□□□□□ -1.78
HMGB1-204ENST00000399489 PRKACBP22694 351 aa3.9□□□□□ -1.78
HMGB1-204ENST00000399489 PIK3R1P27986 724 aa3.9□□□□□ -1.78
HMGB1-204ENST00000399489 CA8P35219 290 aa3.9□□□□□ -1.78
HMGB1-204ENST00000399489 NUP62P37198 522 aaPredicted RBP3.9□□□□□ -1.78
HMGB1-204ENST00000399489 SLC1A3P43003 542 aa3.9□□□□□ -1.78
HMGB1-204ENST00000399489 SLC11A1P49279 550 aa3.9□□□□□ -1.78
HMGB1-204ENST00000399489 BLVRAP53004 296 aa3.9□□□□□ -1.78
HMGB1-204ENST00000399489 TPTEP56180 551 aa3.9□□□□□ -1.78
HMGB1-204ENST00000399489 TGM3Q08188 693 aa3.9□□□□□ -1.78
HMGB1-204ENST00000399489 GK2Q14410 553 aaPredicted RBP3.9□□□□□ -1.78
HMGB1-204ENST00000399489 NR1D2Q14995 579 aa3.9□□□□□ -1.78
HMGB1-204ENST00000399489 WDR43Q15061 677 aaKnown RBP eCLIP3.9□□□□□ -1.78
HMGB1-204ENST00000399489 PLEKHO1Q53GL0 409 aaPredicted RBP3.9□□□□□ -1.78
HMGB1-204ENST00000399489 ESCO2Q56NI9 601 aa3.9□□□□□ -1.78
HMGB1-204ENST00000399489 CORO6Q6QEF8 472 aa3.9□□□□□ -1.78
HMGB1-204ENST00000399489 ZNF474Q6S9Z5 364 aaPredicted RBP3.9□□□□□ -1.78
HMGB1-204ENST00000399489 ZNF517Q6ZMY9 492 aaPredicted RBP3.9□□□□□ -1.78
HMGB1-204ENST00000399489 MEPCEQ7L2J0 689 aaKnown RBP3.9□□□□□ -1.78
HMGB1-204ENST00000399489 ERASQ7Z444 233 aa3.9□□□□□ -1.78
HMGB1-204ENST00000399489 ADGRD2Q7Z7M1 963 aa3.9□□□□□ -1.78
HMGB1-204ENST00000399489 LAX1Q8IWV1 398 aa3.9□□□□□ -1.78
HMGB1-204ENST00000399489 FAM9CQ8IZT9 166 aa3.9□□□□□ -1.78
HMGB1-204ENST00000399489 APCDD1Q8J025 514 aa3.9□□□□□ -1.78
HMGB1-204ENST00000399489 ARHGAP24Q8N264 748 aa3.9□□□□□ -1.78
HMGB1-204ENST00000399489 PAQR4Q8N4S7 273 aaPredicted RBP3.9□□□□□ -1.78
HMGB1-204ENST00000399489 LINC01465Q8N7H1 131 aa3.9□□□□□ -1.78
HMGB1-204ENST00000399489 Q8N9P0 234 aaPredicted RBP3.9□□□□□ -1.78
HMGB1-204ENST00000399489 C17orf47Q8NEP4 570 aa3.9□□□□□ -1.78
HMGB1-204ENST00000399489 OR1J2Q8NGS2 313 aa3.9□□□□□ -1.78
HMGB1-204ENST00000399489 OR9A1PQ8NGU1 263 aa3.9□□□□□ -1.78
HMGB1-204ENST00000399489 OR4A16Q8NH70 328 aa3.9□□□□□ -1.78
HMGB1-204ENST00000399489 FCGR1BQ92637 280 aa3.9□□□□□ -1.78
HMGB1-204ENST00000399489 OXNAD1Q96HP4 312 aaPredicted RBP3.9□□□□□ -1.78
HMGB1-204ENST00000399489 LRR1Q96L50 414 aa3.9□□□□□ -1.78
HMGB1-204ENST00000399489 SFXN2Q96NB2 322 aa3.9□□□□□ -1.78
HMGB1-204ENST00000399489 TRMOQ9BU70 441 aa3.9□□□□□ -1.78
HMGB1-204ENST00000399489 ALG12Q9BV10 488 aa3.9□□□□□ -1.78
HMGB1-204ENST00000399489 FTHL17Q9BXU8 183 aa3.9□□□□□ -1.78
HMGB1-204ENST00000399489 ADGRE3Q9BY15 652 aa3.9□□□□□ -1.78
HMGB1-204ENST00000399489 MRPL13Q9BYD1 178 aaKnown RBP3.9□□□□□ -1.78
HMGB1-204ENST00000399489 PKIBQ9C010 78 aa3.9□□□□□ -1.78
HMGB1-204ENST00000399489 CUEDC2Q9H467 287 aa3.9□□□□□ -1.78
HMGB1-204ENST00000399489 WDR76Q9H967 626 aa3.9□□□□□ -1.78
HMGB1-204ENST00000399489 FN3KRPQ9HA64 309 aa3.9□□□□□ -1.78
HMGB1-204ENST00000399489 DNAJC4Q9NNZ3 241 aa3.9□□□□□ -1.78
HMGB1-204ENST00000399489 RAB9BQ9NP90 201 aa3.9□□□□□ -1.78
HMGB1-204ENST00000399489 SERTAD4Q9NUC0 356 aa3.9□□□□□ -1.78
HMGB1-204ENST00000399489 RDH8Q9NYR8 311 aa3.9□□□□□ -1.78
HMGB1-204ENST00000399489 DBNLQ9UJU6 430 aaKnown RBP3.9□□□□□ -1.78
HMGB1-204ENST00000399489 SH2B3Q9UQQ2 575 aa3.9□□□□□ -1.78
HMGB1-204ENST00000399489 SIRT4Q9Y6E7 314 aaPredicted RBP3.9□□□□□ -1.78
HMGB1-204ENST00000399489 CLASP1Q7Z460 1538 aa3.9□□□□□ -1.79
HMGB1-204ENST00000399489 TOPBP1Q92547 1522 aa3.9□□□□□ -1.79
HMGB1-204ENST00000399489 SPATA31A1Q5TZJ5 1347 aa3.9□□□□□ -1.79
HMGB1-204ENST00000399489 SPATA31A5Q5VU36 1347 aa3.9□□□□□ -1.79
HMGB1-204ENST00000399489 SPATA31A7Q8IWB4 1347 aa3.9□□□□□ -1.79
HMGB1-204ENST00000399489 C11orf97A0A1B0GVM6 126 aaPredicted RBP3.9□□□□□ -1.79
HMGB1-204ENST00000399489 TYW5A2RUC4 315 aaKnown RBP3.9□□□□□ -1.79
HMGB1-204ENST00000399489 SPECC1L-ADORA2AF8WAN1 911 aa3.9□□□□□ -1.79
HMGB1-204ENST00000399489 H3BMM5 538 aa3.9□□□□□ -1.79
HMGB1-204ENST00000399489 GRID2O43424 1007 aa3.9□□□□□ -1.79
HMGB1-204ENST00000399489 SSX4O60224 188 aa3.9□□□□□ -1.79
HMGB1-204ENST00000399489 TSPAN1O60635 241 aa3.9□□□□□ -1.79
HMGB1-204ENST00000399489 LRP3O75074 770 aa3.9□□□□□ -1.79
HMGB1-204ENST00000399489 ITGA3P26006 1051 aa3.9□□□□□ -1.79
HMGB1-204ENST00000399489 SLC1A6P48664 564 aa3.9□□□□□ -1.79
HMGB1-204ENST00000399489 FMO5P49326 533 aa3.9□□□□□ -1.79
HMGB1-204ENST00000399489 CFHR3Q02985 330 aa3.9□□□□□ -1.79
HMGB1-204ENST00000399489 RFTN1Q14699 578 aaPredicted RBP3.9□□□□□ -1.79
HMGB1-204ENST00000399489 DECR1Q16698 335 aa3.9□□□□□ -1.79
HMGB1-204ENST00000399489 TPD52L1Q16890 204 aaPredicted RBP3.9□□□□□ -1.79
HMGB1-204ENST00000399489 KIF19Q2TAC6 998 aa3.9□□□□□ -1.79
HMGB1-204ENST00000399489 CTU2Q2VPK5 515 aaKnown RBP3.9□□□□□ -1.79
HMGB1-204ENST00000399489 MPPE1Q53F39 396 aa3.9□□□□□ -1.79
HMGB1-204ENST00000399489 AARS2Q5JTZ9 985 aaKnown RBP3.9□□□□□ -1.79
HMGB1-204ENST00000399489 C6orf10Q5SRN2 563 aa3.9□□□□□ -1.79
HMGB1-204ENST00000399489 LIN9Q5TKA1 542 aa3.9□□□□□ -1.79
HMGB1-204ENST00000399489 MORN5Q5VZ52 161 aa3.9□□□□□ -1.79
HMGB1-204ENST00000399489 ZNF626Q68DY1 528 aa3.9□□□□□ -1.79
HMGB1-204ENST00000399489 PLEKHA7Q6IQ23 1121 aa3.9□□□□□ -1.79
HMGB1-204ENST00000399489 KIRREL2Q6UWL6 708 aa3.9□□□□□ -1.79
HMGB1-204ENST00000399489 SLC16A9Q7RTY1 509 aa3.9□□□□□ -1.79
HMGB1-204ENST00000399489 WDR53Q7Z5U6 358 aaPredicted RBP3.9□□□□□ -1.79
HMGB1-204ENST00000399489 CCDC190Q86UF4 302 aa3.9□□□□□ -1.79
HMGB1-204ENST00000399489 OFCC1Q8IZS5 231 aa3.9□□□□□ -1.79
HMGB1-204ENST00000399489 SLC7A5P1Q8MH63 180 aa3.9□□□□□ -1.79
HMGB1-204ENST00000399489 SLC43A2Q8N370 569 aa3.9□□□□□ -1.79
HMGB1-204ENST00000399489 SLC22A8Q8TCC7 542 aa3.9□□□□□ -1.79
HMGB1-204ENST00000399489 RFKQ969G6 155 aa3.9□□□□□ -1.79
HMGB1-204ENST00000399489 WBP2Q969T9 261 aa3.9□□□□□ -1.79
HMGB1-204ENST00000399489 ISG20Q96AZ6 181 aaKnown RBP3.9□□□□□ -1.79
HMGB1-204ENST00000399489 EFHD2Q96C19 240 aaPredicted RBP3.9□□□□□ -1.79
HMGB1-204ENST00000399489 ERLEC1Q96DZ1 483 aa3.9□□□□□ -1.79
HMGB1-204ENST00000399489 COQ7Q99807 217 aa3.9□□□□□ -1.79
HMGB1-204ENST00000399489 MRPL37Q9BZE1 423 aaKnown RBP3.9□□□□□ -1.79
HMGB1-204ENST00000399489 SLC39A8Q9C0K1 460 aa3.9□□□□□ -1.79
HMGB1-204ENST00000399489 VCX3BQ9H321 246 aa3.9□□□□□ -1.79
HMGB1-204ENST00000399489 PARVGQ9HBI0 331 aa3.9□□□□□ -1.79
HMGB1-204ENST00000399489 HHATLQ9HCP6 504 aa3.9□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 58.4 ms