RNA–Protein interactions for RNA: ENST00000393824.7

CUX1-204, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-204ENST00000393824 CDCA3Q99618 268 aaPredicted RBP10.79□□□□□ -0.68
CUX1-204ENST00000393824 APOL4Q9BPW4 351 aa10.79□□□□□ -0.68
CUX1-204ENST00000393824 TTYH2Q9BSA4 534 aa10.79□□□□□ -0.68
CUX1-204ENST00000393824 RHNO1Q9BSD3 238 aa10.79□□□□□ -0.68
CUX1-204ENST00000393824 C1QTNF3Q9BXJ4 246 aa10.79□□□□□ -0.68
CUX1-204ENST00000393824 GABARAPL1Q9H0R8 117 aa10.79□□□□□ -0.68
CUX1-204ENST00000393824 TRIM39Q9HCM9 518 aa10.79□□□□□ -0.68
CUX1-204ENST00000393824 GIMAP4Q9NUV9 329 aa10.79□□□□□ -0.68
CUX1-204ENST00000393824 PCDHGB2Q9Y5G2 931 aa10.79□□□□□ -0.68
CUX1-204ENST00000393824 LYVE1Q9Y5Y7 322 aa10.79□□□□□ -0.68
CUX1-204ENST00000393824 SNTNA6NMZ2 147 aa10.79□□□□□ -0.68
CUX1-204ENST00000393824 WASH4PA8MWX3 477 aa10.79□□□□□ -0.68
CUX1-204ENST00000393824 M0R082 166 aa10.79□□□□□ -0.68
CUX1-204ENST00000393824 SHOXO15266 292 aa10.79□□□□□ -0.68
CUX1-204ENST00000393824 PEX11BO96011 259 aa10.79□□□□□ -0.68
CUX1-204ENST00000393824 RETP07949 1114 aa10.79□□□□□ -0.68
CUX1-204ENST00000393824 CSNK2BP67870 215 aa10.79□□□□□ -0.68
CUX1-204ENST00000393824 ACVR1Q04771 509 aa10.79□□□□□ -0.68
CUX1-204ENST00000393824 MESP2Q0VG99 397 aa10.79□□□□□ -0.68
CUX1-204ENST00000393824 TARDBPQ13148 414 aaKnown RBP eCLIP10.79□□□□□ -0.689e-7■■■■□ 26.1
CUX1-204ENST00000393824 IHHQ14623 411 aa10.79□□□□□ -0.68
CUX1-204ENST00000393824 MAD2L1BPQ15013 274 aaPredicted RBP10.79□□□□□ -0.68
CUX1-204ENST00000393824 CCDC85BQ15834 202 aaPredicted RBP10.79□□□□□ -0.68
CUX1-204ENST00000393824 SYT16Q17RD7 645 aa10.79□□□□□ -0.68
CUX1-204ENST00000393824 TBRG1Q3YBR2 411 aa10.79□□□□□ -0.68
CUX1-204ENST00000393824 ATP6AP1LQ52LC2 224 aa10.79□□□□□ -0.68
CUX1-204ENST00000393824 SHQ1Q6PI26 577 aaKnown RBP10.79□□□□□ -0.68
CUX1-204ENST00000393824 LYPD8Q6UX82 237 aa10.79□□□□□ -0.68
CUX1-204ENST00000393824 ZNF517Q6ZMY9 492 aaPredicted RBP10.79□□□□□ -0.68
CUX1-204ENST00000393824 NRARPQ7Z6K4 114 aa10.79□□□□□ -0.68
CUX1-204ENST00000393824 RAB43Q86YS6 212 aa10.79□□□□□ -0.68
CUX1-204ENST00000393824 FAM217AQ8IXS0 508 aa10.79□□□□□ -0.68
CUX1-204ENST00000393824 UMODL1-AS1Q8N2C9 162 aa10.79□□□□□ -0.68
CUX1-204ENST00000393824 DMRTB1Q96MA1 342 aa10.79□□□□□ -0.68
CUX1-204ENST00000393824 OR2A14Q96R47 310 aa10.79□□□□□ -0.68
CUX1-204ENST00000393824 RPP25Q9BUL9 199 aaKnown RBP10.79□□□□□ -0.68
CUX1-204ENST00000393824 ATP13A2Q9NQ11 1180 aa10.79□□□□□ -0.68
CUX1-204ENST00000393824 DCAF13Q9NV06 445 aaKnown RBP10.79□□□□□ -0.68
CUX1-204ENST00000393824 NDRG4Q9ULP0 352 aaKnown RBP10.79□□□□□ -0.68
CUX1-204ENST00000393824 TBC1D24Q9ULP9 559 aa10.79□□□□□ -0.68
CUX1-204ENST00000393824 SNX6Q9UNH7 406 aa10.79□□□□□ -0.68
CUX1-204ENST00000393824 MYO15AQ9UKN7 3530 aa10.78□□□□□ -0.68
CUX1-204ENST00000393824 A0A0G2JMP0 313 aa10.78□□□□□ -0.68
CUX1-204ENST00000393824 GSTA4O15217 222 aa10.78□□□□□ -0.68
CUX1-204ENST00000393824 TBL1XO60907 577 aa10.78□□□□□ -0.68
CUX1-204ENST00000393824 KERAO60938 352 aa10.78□□□□□ -0.68
CUX1-204ENST00000393824 MITFO75030 526 aaPredicted RBP10.78□□□□□ -0.68
CUX1-204ENST00000393824 FAM20BO75063 409 aa10.78□□□□□ -0.68
CUX1-204ENST00000393824 SEC22BO75396 215 aa10.78□□□□□ -0.68
CUX1-204ENST00000393824 POU2F2P09086 479 aa10.78□□□□□ -0.68
CUX1-204ENST00000393824 UROSP10746 265 aa10.78□□□□□ -0.68
CUX1-204ENST00000393824 MSH3P20585 1137 aa10.78□□□□□ -0.68
CUX1-204ENST00000393824 FCARP24071 287 aa10.78□□□□□ -0.68
CUX1-204ENST00000393824 GADD45AP24522 165 aa10.78□□□□□ -0.68
CUX1-204ENST00000393824 HOXD9P28356 352 aaPredicted RBP10.78□□□□□ -0.68
CUX1-204ENST00000393824 BNC1Q01954 994 aa10.78□□□□□ -0.68
CUX1-204ENST00000393824 SIM2Q14190 667 aaPredicted RBP10.78□□□□□ -0.68
CUX1-204ENST00000393824 PROX2Q3B8N5 592 aa10.78□□□□□ -0.68
CUX1-204ENST00000393824 C6orf136Q5SQH8 315 aa10.78□□□□□ -0.68
CUX1-204ENST00000393824 CCNJQ5T5M9 372 aa10.78□□□□□ -0.68
CUX1-204ENST00000393824 CPZQ66K79 652 aa10.78□□□□□ -0.68
CUX1-204ENST00000393824 ANKS6Q68DC2 871 aa10.78□□□□□ -0.68
CUX1-204ENST00000393824 IL31Q6EBC2 164 aa10.78□□□□□ -0.68
CUX1-204ENST00000393824 LIX1LQ8IVB5 337 aa10.78□□□□□ -0.68
CUX1-204ENST00000393824 STAG3L4Q8TBR4 150 aa10.78□□□□□ -0.68
CUX1-204ENST00000393824 ASB16Q96NS5 453 aa10.78□□□□□ -0.68
CUX1-204ENST00000393824 MYADMQ96S97 322 aa10.78□□□□□ -0.68
CUX1-204ENST00000393824 SYTL2Q9HCH5 934 aa10.78□□□□□ -0.68
CUX1-204ENST00000393824 AASSQ9UDR5 926 aa10.78□□□□□ -0.68
CUX1-204ENST00000393824 DPP7Q9UHL4 492 aa10.78□□□□□ -0.68
CUX1-204ENST00000393824 RIMKLBQ9ULI2 386 aa10.78□□□□□ -0.68
CUX1-204ENST00000393824 GMPPBQ9Y5P6 360 aa10.78□□□□□ -0.68
CUX1-204ENST00000393824 MYLKQ15746 1914 aa10.78□□□□□ -0.68
CUX1-204ENST00000393824 ANTXRLA6NF34 631 aa10.78□□□□□ -0.68
CUX1-204ENST00000393824 FADS2P1A8MWK0 482 aa10.78□□□□□ -0.68
CUX1-204ENST00000393824 STX16O14662 325 aa10.78□□□□□ -0.68
CUX1-204ENST00000393824 CRCPO75575 148 aa10.78□□□□□ -0.68
CUX1-204ENST00000393824 MLYCDO95822 493 aa10.78□□□□□ -0.68
CUX1-204ENST00000393824 RPLP0P05388 317 aaKnown RBP10.78□□□□□ -0.68
CUX1-204ENST00000393824 IL32P24001 234 aa10.78□□□□□ -0.68
CUX1-204ENST00000393824 PIK3CBP42338 1070 aa10.78□□□□□ -0.68
CUX1-204ENST00000393824 RENBPP51606 427 aa10.78□□□□□ -0.68
CUX1-204ENST00000393824 OR4D1Q15615 310 aa10.78□□□□□ -0.68
CUX1-204ENST00000393824 SMN1Q16637 294 aaKnown RBP10.78□□□□□ -0.68
CUX1-204ENST00000393824 KDM4DQ6B0I6 523 aa10.78□□□□□ -0.68
CUX1-204ENST00000393824 ASTLQ6HA08 431 aaPredicted RBP10.78□□□□□ -0.68
CUX1-204ENST00000393824 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP10.78□□□□□ -0.68
CUX1-204ENST00000393824 SLC46A3Q7Z3Q1 461 aa10.78□□□□□ -0.68
CUX1-204ENST00000393824 PIM3Q86V86 326 aa10.78□□□□□ -0.68
CUX1-204ENST00000393824 PHF6Q8IWS0 365 aaKnown RBP eCLIP10.78□□□□□ -0.684e-7■■■□□ 15
CUX1-204ENST00000393824 PAF1Q8N7H5 531 aa10.78□□□□□ -0.68
CUX1-204ENST00000393824 OR2T11Q8NH01 316 aa10.78□□□□□ -0.68
CUX1-204ENST00000393824 EXT2Q93063 718 aa10.78□□□□□ -0.68
CUX1-204ENST00000393824 KIAA1191Q96A73 305 aa10.78□□□□□ -0.68
CUX1-204ENST00000393824 MSLNLQ96KJ4 702 aa10.78□□□□□ -0.68
CUX1-204ENST00000393824 TOR4AQ9NXH8 423 aa10.78□□□□□ -0.68
CUX1-204ENST00000393824 A0A0X1KG70 313 aa10.77□□□□□ -0.69
CUX1-204ENST00000393824 ELOVL7A1L3X0 281 aa10.77□□□□□ -0.69
CUX1-204ENST00000393824 MEIOCA2RUB1 952 aa10.77□□□□□ -0.69
CUX1-204ENST00000393824 KRT87PA6NCN2 255 aa10.77□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 68.6 ms