RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 KRT78Q8N1N4 520 aa13.23□□□□□ -0.29
PTPRF-202ENST00000372405 RAB42Q8N4Z0 105 aa13.23□□□□□ -0.29
PTPRF-202ENST00000372405 DEFB119Q8N690 84 aa13.23□□□□□ -0.29
PTPRF-202ENST00000372405 OR7A2PQ8NGA2 310 aa13.23□□□□□ -0.29
PTPRF-202ENST00000372405 WDR48Q8TAF3 677 aa13.23□□□□□ -0.29
PTPRF-202ENST00000372405 SNX19Q92543 992 aa13.23□□□□□ -0.29
PTPRF-202ENST00000372405 UBE2E3Q969T4 207 aa13.23□□□□□ -0.29
PTPRF-202ENST00000372405 SHDQ96IW2 340 aa13.23□□□□□ -0.29
PTPRF-202ENST00000372405 SLC6A18Q96N87 628 aa13.23□□□□□ -0.29
PTPRF-202ENST00000372405 TACO1Q9BSH4 297 aaKnown RBP13.23□□□□□ -0.29
PTPRF-202ENST00000372405 RAB11FIP5Q9BXF6 653 aa13.23□□□□□ -0.29
PTPRF-202ENST00000372405 RHBGQ9H310 441 aa13.23□□□□□ -0.29
PTPRF-202ENST00000372405 TBC1D17Q9HA65 648 aa13.23□□□□□ -0.29
PTPRF-202ENST00000372405 SIRT5Q9NXA8 310 aa13.23□□□□□ -0.29
PTPRF-202ENST00000372405 STOML1Q9UBI4 398 aa13.23□□□□□ -0.29
PTPRF-202ENST00000372405 EXO1Q9UQ84 846 aaKnown RBP13.23□□□□□ -0.29
PTPRF-202ENST00000372405 INVSQ9Y283 1065 aa13.23□□□□□ -0.29
PTPRF-202ENST00000372405 BTBD3Q9Y2F9 522 aa13.23□□□□□ -0.29
PTPRF-202ENST00000372405 HEBP2Q9Y5Z4 205 aa13.23□□□□□ -0.29
PTPRF-202ENST00000372405 CEP192Q8TEP8 1941 aa13.23□□□□□ -0.29
PTPRF-202ENST00000372405 GOLGA4Q13439 2230 aaKnown RBP13.23□□□□□ -0.29
PTPRF-202ENST00000372405 ABCA7Q8IZY2 2146 aa13.23□□□□□ -0.29
PTPRF-202ENST00000372405 MDC1Q14676 2089 aaKnown RBP13.23□□□□□ -0.29
PTPRF-202ENST00000372405 TRBV5-3A0A0A0MS03 114 aa13.23□□□□□ -0.29
PTPRF-202ENST00000372405 GBAP04062 536 aa13.23□□□□□ -0.29
PTPRF-202ENST00000372405 ANXA4P09525 319 aaPredicted RBP13.23□□□□□ -0.29
PTPRF-202ENST00000372405 THEGLP0DJG4 465 aa13.23□□□□□ -0.29
PTPRF-202ENST00000372405 F3P13726 295 aa13.23□□□□□ -0.29
PTPRF-202ENST00000372405 PRPS1L1P21108 318 aa13.23□□□□□ -0.29
PTPRF-202ENST00000372405 ATP6V1B2P21281 511 aa13.23□□□□□ -0.29
PTPRF-202ENST00000372405 PTPN6P29350 595 aa13.23□□□□□ -0.29
PTPRF-202ENST00000372405 GSK3BP49841 420 aa13.23□□□□□ -0.29
PTPRF-202ENST00000372405 WNT3P56703 355 aa13.23□□□□□ -0.29
PTPRF-202ENST00000372405 MTPNP58546 118 aa13.23□□□□□ -0.29
PTPRF-202ENST00000372405 LIPEQ05469 1076 aa13.23□□□□□ -0.29
PTPRF-202ENST00000372405 GTDC1Q4AE62 458 aa13.23□□□□□ -0.29
PTPRF-202ENST00000372405 CYP2R1Q6VVX0 501 aa13.23□□□□□ -0.29
PTPRF-202ENST00000372405 DNAJC14Q6Y2X3 702 aaPredicted RBP13.23□□□□□ -0.29
PTPRF-202ENST00000372405 ANKRD46Q86W74 232 aa13.23□□□□□ -0.29
PTPRF-202ENST00000372405 SFTPA2Q8IWL1 248 aa13.23□□□□□ -0.29
PTPRF-202ENST00000372405 PHACTR4Q8IZ21 702 aa13.23□□□□□ -0.29
PTPRF-202ENST00000372405 FAM9CQ8IZT9 166 aa13.23□□□□□ -0.29
PTPRF-202ENST00000372405 FBXL6Q8N531 539 aa13.23□□□□□ -0.29
PTPRF-202ENST00000372405 PUM2Q8TB72 1066 aaKnown RBP eCLIP13.23□□□□□ -0.29
PTPRF-202ENST00000372405 GPBAR1Q8TDU6 330 aa13.23□□□□□ -0.29
PTPRF-202ENST00000372405 INPP5KQ9BT40 448 aa13.23□□□□□ -0.29
PTPRF-202ENST00000372405 PAIP1Q9H074 479 aaKnown RBP13.23□□□□□ -0.29
PTPRF-202ENST00000372405 CHRDQ9H2X0 955 aa13.23□□□□□ -0.29
PTPRF-202ENST00000372405 IKZF5Q9H5V7 419 aa13.23□□□□□ -0.29
PTPRF-202ENST00000372405 ERVK-11Q9UQG0 969 aa13.23□□□□□ -0.29
PTPRF-202ENST00000372405 PCDHB11Q9Y5F2 797 aa13.23□□□□□ -0.29
PTPRF-202ENST00000372405 COLEC10Q9Y6Z7 277 aa13.23□□□□□ -0.29
PTPRF-202ENST00000372405 C19orf67A6NJJ6 358 aa13.22□□□□□ -0.29
PTPRF-202ENST00000372405 YY2O15391 372 aa13.22□□□□□ -0.29
PTPRF-202ENST00000372405 PCDH7O60245 1069 aa13.22□□□□□ -0.29
PTPRF-202ENST00000372405 LCMT2O60294 686 aaKnown RBP13.22□□□□□ -0.29
PTPRF-202ENST00000372405 PRMT3O60678 531 aa13.22□□□□□ -0.29
PTPRF-202ENST00000372405 SCN2BO60939 215 aa13.22□□□□□ -0.29
PTPRF-202ENST00000372405 KCNH1O95259 989 aa13.22□□□□□ -0.29
PTPRF-202ENST00000372405 BAG2O95816 211 aa13.22□□□□□ -0.29
PTPRF-202ENST00000372405 S100A3P33764 101 aa13.22□□□□□ -0.29
PTPRF-202ENST00000372405 CYP4F2P78329 520 aa13.22□□□□□ -0.29
PTPRF-202ENST00000372405 HKDC1Q2TB90 917 aa13.22□□□□□ -0.29
PTPRF-202ENST00000372405 PGS1Q32NB8 556 aa13.22□□□□□ -0.29
PTPRF-202ENST00000372405 OR4F3Q6IEY1 312 aa13.22□□□□□ -0.29
PTPRF-202ENST00000372405 ANKRD26P1Q6NSI1 321 aa13.22□□□□□ -0.29
PTPRF-202ENST00000372405 LRRC74BQ6ZQY2 392 aa13.22□□□□□ -0.29
PTPRF-202ENST00000372405 LPCAT2Q7L5N7 544 aa13.22□□□□□ -0.29
PTPRF-202ENST00000372405 PLD3Q8IV08 490 aa13.22□□□□□ -0.29
PTPRF-202ENST00000372405 METTL4Q8N3J2 472 aa13.22□□□□□ -0.29
PTPRF-202ENST00000372405 PATE1Q8WXA2 126 aa13.22□□□□□ -0.29
PTPRF-202ENST00000372405 CLDN23Q96B33 292 aa13.22□□□□□ -0.29
PTPRF-202ENST00000372405 ANKRD27Q96NW4 1050 aa13.22□□□□□ -0.29
PTPRF-202ENST00000372405 NELL2Q99435 816 aa13.22□□□□□ -0.29
PTPRF-202ENST00000372405 AIF1LQ9BQI0 150 aa13.22□□□□□ -0.29
PTPRF-202ENST00000372405 SORBS1Q9BX66 1292 aaKnown RBP13.22□□□□□ -0.29
PTPRF-202ENST00000372405 ALG2Q9H553 416 aa13.22□□□□□ -0.29
PTPRF-202ENST00000372405 SLC6A20Q9NP91 592 aa13.22□□□□□ -0.29
PTPRF-202ENST00000372405 EGFL7Q9UHF1 273 aa13.22□□□□□ -0.29
PTPRF-202ENST00000372405 MAN2B2Q9Y2E5 1009 aa13.22□□□□□ -0.29
PTPRF-202ENST00000372405 MYO1DO94832 1006 aa13.21□□□□□ -0.29
PTPRF-202ENST00000372405 TNFP01375 233 aa13.21□□□□□ -0.29
PTPRF-202ENST00000372405 C8BP07358 591 aa13.21□□□□□ -0.29
PTPRF-202ENST00000372405 HOXB3P14651 431 aaPredicted RBP13.21□□□□□ -0.29
PTPRF-202ENST00000372405 PCSK2P16519 638 aa13.21□□□□□ -0.29
PTPRF-202ENST00000372405 CDKN2CP42773 168 aa13.21□□□□□ -0.29
PTPRF-202ENST00000372405 EEFSECP57772 596 aaKnown RBP13.21□□□□□ -0.29
PTPRF-202ENST00000372405 LRIF1Q5T3J3 769 aa13.21□□□□□ -0.29
PTPRF-202ENST00000372405 PRR23BQ6ZRT6 265 aa13.21□□□□□ -0.29
PTPRF-202ENST00000372405 SPATA24Q86W54 205 aa13.21□□□□□ -0.29
PTPRF-202ENST00000372405 IFNEQ86WN2 208 aa13.21□□□□□ -0.29
PTPRF-202ENST00000372405 PJA1Q8NG27 643 aa13.21□□□□□ -0.29
PTPRF-202ENST00000372405 OR2L3Q8NG85 312 aa13.21□□□□□ -0.29
PTPRF-202ENST00000372405 OR4E2Q8NGC2 313 aa13.21□□□□□ -0.29
PTPRF-202ENST00000372405 CDC26Q8NHZ8 85 aa13.21□□□□□ -0.29
PTPRF-202ENST00000372405 ZNF717Q9BY31 904 aaPredicted RBP13.21□□□□□ -0.29
PTPRF-202ENST00000372405 REXO4Q9GZR2 422 aaKnown RBP13.21□□□□□ -0.29
PTPRF-202ENST00000372405 NT5DC2Q9H857 520 aa13.21□□□□□ -0.29
PTPRF-202ENST00000372405 SYNPO2LQ9H987 977 aa13.21□□□□□ -0.29
PTPRF-202ENST00000372405 PRM3Q9NNZ6 103 aa13.21□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 51.3 ms