RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 PPRC1Q5VV67 1664 aaKnown RBP3.97□□□□□ -1.77
USH2A-202ENST00000366942 IRGMA1A4Y4 181 aa3.97□□□□□ -1.77
USH2A-202ENST00000366942 TUBAL3A6NHL2 446 aa3.97□□□□□ -1.77
USH2A-202ENST00000366942 LINC01387J3KSC0 135 aa3.97□□□□□ -1.77
USH2A-202ENST00000366942 BCKDKO14874 412 aa3.97□□□□□ -1.77
USH2A-202ENST00000366942 CHP2O43745 196 aa3.97□□□□□ -1.77
USH2A-202ENST00000366942 SOCS5O75159 536 aa3.97□□□□□ -1.77
USH2A-202ENST00000366942 SNCGO76070 127 aa3.97□□□□□ -1.77
USH2A-202ENST00000366942 TMEM63AO94886 807 aa3.97□□□□□ -1.77
USH2A-202ENST00000366942 INMTO95050 263 aa3.97□□□□□ -1.77
USH2A-202ENST00000366942 GSPT1P15170 499 aaKnown RBP3.97□□□□□ -1.77
USH2A-202ENST00000366942 ZNF20P17024 532 aa3.97□□□□□ -1.77
USH2A-202ENST00000366942 EPORP19235 508 aa3.97□□□□□ -1.77
USH2A-202ENST00000366942 TFE3P19532 575 aaPredicted RBP3.97□□□□□ -1.77
USH2A-202ENST00000366942 EPHA1P21709 976 aa3.97□□□□□ -1.77
USH2A-202ENST00000366942 CFL1P23528 166 aaKnown RBP3.97□□□□□ -1.77
USH2A-202ENST00000366942 SLC5A2P31639 672 aa3.97□□□□□ -1.77
USH2A-202ENST00000366942 PCGF2P35227 344 aa3.97□□□□□ -1.77
USH2A-202ENST00000366942 RAB13P51153 203 aa3.97□□□□□ -1.77
USH2A-202ENST00000366942 ARFIP2P53365 341 aa3.97□□□□□ -1.77
USH2A-202ENST00000366942 AP1S2P56377 157 aa3.97□□□□□ -1.77
USH2A-202ENST00000366942 ARHGAP1Q07960 439 aa3.97□□□□□ -1.77
USH2A-202ENST00000366942 RBM20Q5T481 1227 aaKnown RBP3.97□□□□□ -1.77
USH2A-202ENST00000366942 CES3Q6UWW8 571 aa3.97□□□□□ -1.77
USH2A-202ENST00000366942 KRT74Q7RTS7 529 aa3.97□□□□□ -1.77
USH2A-202ENST00000366942 DND1Q8IYX4 353 aaKnown RBP3.97□□□□□ -1.77
USH2A-202ENST00000366942 BHLHE22Q8NFJ8 381 aaPredicted RBP3.97□□□□□ -1.77
USH2A-202ENST00000366942 FBXO30Q8TB52 745 aa3.97□□□□□ -1.77
USH2A-202ENST00000366942 RGMAQ96B86 450 aa3.97□□□□□ -1.77
USH2A-202ENST00000366942 LRCH3Q96II8 777 aa3.97□□□□□ -1.77
USH2A-202ENST00000366942 FOXQ1Q9C009 403 aa3.97□□□□□ -1.77
USH2A-202ENST00000366942 LRRN3Q9H3W5 708 aa3.97□□□□□ -1.77
USH2A-202ENST00000366942 FZD8Q9H461 694 aa3.97□□□□□ -1.77
USH2A-202ENST00000366942 ST6GALNAC1Q9NSC7 600 aaPredicted RBP3.97□□□□□ -1.77
USH2A-202ENST00000366942 SDHAF2Q9NX18 166 aa3.97□□□□□ -1.77
USH2A-202ENST00000366942 KCNK6Q9Y257 313 aa3.97□□□□□ -1.77
USH2A-202ENST00000366942 DHRS7Q9Y394 339 aa3.97□□□□□ -1.77
USH2A-202ENST00000366942 LMTK2Q8IWU2 1503 aa3.97□□□□□ -1.77
USH2A-202ENST00000366942 LOC101059915A0A1B0GWI6 518 aaPredicted RBP3.97□□□□□ -1.77
USH2A-202ENST00000366942 TTC26A0AVF1 554 aa3.97□□□□□ -1.77
USH2A-202ENST00000366942 TRABD2BA6NFA1 517 aa3.97□□□□□ -1.77
USH2A-202ENST00000366942 FAM187AA6NFU0 413 aa3.97□□□□□ -1.77
USH2A-202ENST00000366942 ASNA1O43681 348 aa3.97□□□□□ -1.77
USH2A-202ENST00000366942 RFPL2O75678 378 aa3.97□□□□□ -1.77
USH2A-202ENST00000366942 ATE1O95260 518 aa3.97□□□□□ -1.77
USH2A-202ENST00000366942 DHFRP00374 187 aa3.97□□□□□ -1.77
USH2A-202ENST00000366942 PRG2P13727 222 aa3.97□□□□□ -1.77
USH2A-202ENST00000366942 GLRA2P23416 452 aa3.97□□□□□ -1.77
USH2A-202ENST00000366942 AHCYP23526 432 aa3.97□□□□□ -1.77
USH2A-202ENST00000366942 LRPAP1P30533 357 aa3.97□□□□□ -1.77
USH2A-202ENST00000366942 GSTM5P46439 218 aa3.97□□□□□ -1.77
USH2A-202ENST00000366942 ARSEP51690 589 aa3.97□□□□□ -1.77
USH2A-202ENST00000366942 NR1H2P55055 460 aa3.97□□□□□ -1.77
USH2A-202ENST00000366942 ADAM15Q13444 863 aa3.97□□□□□ -1.77
USH2A-202ENST00000366942 ERV3-1Q14264 604 aa3.97□□□□□ -1.77
USH2A-202ENST00000366942 SMCO1Q147U7 214 aa3.97□□□□□ -1.77
USH2A-202ENST00000366942 ASTE1Q2TB18 679 aaPredicted RBP3.97□□□□□ -1.77
USH2A-202ENST00000366942 KRTCAP3Q53RY4 240 aa3.97□□□□□ -1.77
USH2A-202ENST00000366942 SLC22A25Q6T423 547 aa3.97□□□□□ -1.77
USH2A-202ENST00000366942 ZNF598Q86UK7 904 aaKnown RBP3.97□□□□□ -1.77
USH2A-202ENST00000366942 LGI4Q8N135 537 aa3.97□□□□□ -1.77
USH2A-202ENST00000366942 BMPERQ8N8U9 685 aa3.97□□□□□ -1.77
USH2A-202ENST00000366942 SERINC2Q96SA4 455 aa3.97□□□□□ -1.77
USH2A-202ENST00000366942 CLK4Q9HAZ1 481 aaKnown RBP3.97□□□□□ -1.77
USH2A-202ENST00000366942 TRIM39Q9HCM9 518 aa3.97□□□□□ -1.77
USH2A-202ENST00000366942 ERVK-5Q9HDB9 667 aa3.97□□□□□ -1.77
USH2A-202ENST00000366942 RCOR3Q9P2K3 495 aaPredicted RBP3.97□□□□□ -1.77
USH2A-202ENST00000366942 SALL4Q9UJQ4 1053 aa3.97□□□□□ -1.77
USH2A-202ENST00000366942 SLC7A7Q9UM01 511 aa3.97□□□□□ -1.77
USH2A-202ENST00000366942 ALKQ9UM73 1620 aa3.97□□□□□ -1.77
USH2A-202ENST00000366942 LOC102723996A0A087X1L8 192 aa3.97□□□□□ -1.77
USH2A-202ENST00000366942 LOC102725191A0A1B0GVB3 256 aa3.97□□□□□ -1.77
USH2A-202ENST00000366942 A0A1W2PQ09 198 aa3.97□□□□□ -1.77
USH2A-202ENST00000366942 SLC5A10A0PJK1 596 aa3.97□□□□□ -1.77
USH2A-202ENST00000366942 INSIG1O15503 277 aa3.97□□□□□ -1.77
USH2A-202ENST00000366942 SIAH2O43255 324 aa3.97□□□□□ -1.77
USH2A-202ENST00000366942 RRP9O43818 475 aaKnown RBP3.97□□□□□ -1.77
USH2A-202ENST00000366942 CREBL2O60519 120 aaPredicted RBP3.97□□□□□ -1.77
USH2A-202ENST00000366942 CSF2P04141 144 aa3.97□□□□□ -1.77
USH2A-202ENST00000366942 LCKP06239 509 aa3.97□□□□□ -1.77
USH2A-202ENST00000366942 SNRPAP09012 282 aaKnown RBP3.97□□□□□ -1.77
USH2A-202ENST00000366942 OR4Q2P0C623 313 aa3.97□□□□□ -1.77
USH2A-202ENST00000366942 MYL12AP19105 171 aa3.97□□□□□ -1.77
USH2A-202ENST00000366942 MATN1P21941 496 aa3.97□□□□□ -1.77
USH2A-202ENST00000366942 PTPN6P29350 595 aa3.97□□□□□ -1.77
USH2A-202ENST00000366942 GJA4P35212 333 aa3.97□□□□□ -1.77
USH2A-202ENST00000366942 OR2B6P58173 313 aa3.97□□□□□ -1.77
USH2A-202ENST00000366942 CTXN1P60606 82 aa3.97□□□□□ -1.77
USH2A-202ENST00000366942 DSTNP60981 165 aa3.97□□□□□ -1.77
USH2A-202ENST00000366942 TXNL4AP83876 142 aaKnown RBP3.97□□□□□ -1.77
USH2A-202ENST00000366942 MGAT5Q09328 741 aa3.97□□□□□ -1.77
USH2A-202ENST00000366942 BNIP3Q12983 259 aa3.97□□□□□ -1.77
USH2A-202ENST00000366942 DYNC1I2Q13409 638 aaKnown RBP3.97□□□□□ -1.77
USH2A-202ENST00000366942 OCLNQ16625 522 aa3.97□□□□□ -1.77
USH2A-202ENST00000366942 NDUFAF6Q330K2 333 aa3.97□□□□□ -1.77
USH2A-202ENST00000366942 WASHC2DQ5SRD0 308 aa3.97□□□□□ -1.77
USH2A-202ENST00000366942 NAPRTQ6XQN6 538 aa3.97□□□□□ -1.77
USH2A-202ENST00000366942 DDX51Q8N8A6 666 aaKnown RBP eCLIP3.97□□□□□ -1.77
USH2A-202ENST00000366942 B3GALT6Q96L58 329 aa3.97□□□□□ -1.77
USH2A-202ENST00000366942 IL22Q9GZX6 179 aa3.97□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms