RNA–Protein interactions for RNA: ENST00000623461.3

VCL-206, Transcript of vinculin, humanhuman

TSL 1 (best)

Gene VCL, Length 7,995 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-206ENST00000623461 ZNF354BQ96LW1 612 aa8.67□□□□□ -1.02
VCL-206ENST00000623461 KCNH6Q9H252 994 aa8.67□□□□□ -1.02
VCL-206ENST00000623461 N6AMT1Q9Y5N5 214 aa8.67□□□□□ -1.02
VCL-206ENST00000623461 MYH9P35579 1960 aaKnown RBP8.67□□□□□ -1.02
VCL-206ENST00000623461 INSIG1O15503 277 aa8.67□□□□□ -1.02
VCL-206ENST00000623461 OR10H2O60403 315 aa8.67□□□□□ -1.02
VCL-206ENST00000623461 ATG13O75143 517 aa8.67□□□□□ -1.02
VCL-206ENST00000623461 ALDOAP04075 364 aaKnown RBP8.67□□□□□ -1.02
VCL-206ENST00000623461 KIAA1161Q6NSJ0 714 aa8.67□□□□□ -1.02
VCL-206ENST00000623461 ZNF516Q92618 1163 aa8.67□□□□□ -1.02
VCL-206ENST00000623461 THRSPQ92748 146 aa8.67□□□□□ -1.02
VCL-206ENST00000623461 AKT1S1Q96B36 256 aa8.67□□□□□ -1.02
VCL-206ENST00000623461 ZSWIM3Q96MP5 696 aa8.67□□□□□ -1.02
VCL-206ENST00000623461 TMEM168Q9H0V1 697 aa8.67□□□□□ -1.02
VCL-206ENST00000623461 MAGEH1Q9H213 219 aa8.67□□□□□ -1.02
VCL-206ENST00000623461 SOX17Q9H6I2 414 aaPredicted RBP8.67□□□□□ -1.02
VCL-206ENST00000623461 G6PDP11413 515 aa8.67□□□□□ -1.02
VCL-206ENST00000623461 RPS5P46782 204 aaKnown RBP8.67□□□□□ -1.02
VCL-206ENST00000623461 CNTN2Q02246 1040 aa8.67□□□□□ -1.02
VCL-206ENST00000623461 MPPE1Q53F39 396 aa8.67□□□□□ -1.02
VCL-206ENST00000623461 SPIN4Q56A73 249 aa8.67□□□□□ -1.02
VCL-206ENST00000623461 OR6Q1Q8NGQ2 317 aa8.67□□□□□ -1.02
VCL-206ENST00000623461 TCTEX1D2Q8WW35 142 aa8.67□□□□□ -1.02
VCL-206ENST00000623461 DPF3Q92784 378 aa8.67□□□□□ -1.02
VCL-206ENST00000623461 SLC35A5Q9BS91 424 aa8.67□□□□□ -1.02
VCL-206ENST00000623461 FAM105AQ9NUU6 356 aa8.67□□□□□ -1.02
VCL-206ENST00000623461 PCDHGA7Q9Y5G6 932 aa8.67□□□□□ -1.02
VCL-206ENST00000623461 A0A096LPI6 279 aa8.67□□□□□ -1.02
VCL-206ENST00000623461 TRBC2A0A5B9 178 aa8.67□□□□□ -1.02
VCL-206ENST00000623461 TNFRSF10AO00220 468 aa8.67□□□□□ -1.02
VCL-206ENST00000623461 ARF4P18085 180 aaPredicted RBP8.67□□□□□ -1.02
VCL-206ENST00000623461 DGKGP49619 791 aa8.67□□□□□ -1.02
VCL-206ENST00000623461 PSEN2P49810 448 aa8.67□□□□□ -1.02
VCL-206ENST00000623461 KEAP1Q14145 624 aa8.67□□□□□ -1.02
VCL-206ENST00000623461 GALEQ14376 348 aa8.67□□□□□ -1.02
VCL-206ENST00000623461 ZCCHC12Q6PEW1 402 aa8.67□□□□□ -1.02
VCL-206ENST00000623461 PAQR3Q6TCH7 311 aa8.67□□□□□ -1.02
VCL-206ENST00000623461 SLC16A10Q8TF71 515 aa8.67□□□□□ -1.02
VCL-206ENST00000623461 TRIM43Q96BQ3 446 aaPredicted RBP8.67□□□□□ -1.02
VCL-206ENST00000623461 BORCS6Q96GS4 357 aa8.67□□□□□ -1.02
VCL-206ENST00000623461 ZNF471Q9BX82 626 aaPredicted RBP8.67□□□□□ -1.02
VCL-206ENST00000623461 TSSK6Q9BXA6 273 aa8.67□□□□□ -1.02
VCL-206ENST00000623461 KCNK13Q9HB14 408 aa8.67□□□□□ -1.02
VCL-206ENST00000623461 PCDHGA12O60330 932 aa8.67□□□□□ -1.02
VCL-206ENST00000623461 PCDH8O95206 1070 aa8.67□□□□□ -1.02
VCL-206ENST00000623461 ATE1O95260 518 aa8.67□□□□□ -1.02
VCL-206ENST00000623461 ZNF3P17036 446 aa8.67□□□□□ -1.02
VCL-206ENST00000623461 PTPRAP18433 802 aa8.67□□□□□ -1.02
VCL-206ENST00000623461 EIF2DP41214 584 aaKnown RBP8.67□□□□□ -1.02
VCL-206ENST00000623461 RPL35P42766 123 aaKnown RBP8.67□□□□□ -1.02
VCL-206ENST00000623461 SGCGQ13326 291 aa8.67□□□□□ -1.02
VCL-206ENST00000623461 NAE1Q13564 534 aa8.67□□□□□ -1.02
VCL-206ENST00000623461 FBXL19Q6PCT2 694 aa8.67□□□□□ -1.02
VCL-206ENST00000623461 SERPINA9Q86WD7 417 aa8.67□□□□□ -1.02
VCL-206ENST00000623461 TXNDC5Q8NBS9 432 aaKnown RBP8.67□□□□□ -1.02
VCL-206ENST00000623461 SGCDQ92629 289 aa8.67□□□□□ -1.02
VCL-206ENST00000623461 VMP1Q96GC9 406 aa8.67□□□□□ -1.02
VCL-206ENST00000623461 OR51V1Q9H2C8 321 aa8.67□□□□□ -1.02
VCL-206ENST00000623461 VPS29Q9UBQ0 182 aa8.67□□□□□ -1.02
VCL-206ENST00000623461 CYTH4Q9UIA0 394 aa8.67□□□□□ -1.02
VCL-206ENST00000623461 RIMS3Q9UJD0 308 aa8.67□□□□□ -1.02
VCL-206ENST00000623461 ATRNL1Q5VV63 1379 aa8.67□□□□□ -1.02
VCL-206ENST00000623461 BCL9O00512 1426 aa8.67□□□□□ -1.02
VCL-206ENST00000623461 A0A1W2PRB8 838 aa8.67□□□□□ -1.02
VCL-206ENST00000623461 GTPBP1O00178 669 aaKnown RBP8.67□□□□□ -1.02
VCL-206ENST00000623461 XKRYO14609 159 aa8.67□□□□□ -1.02
VCL-206ENST00000623461 WNT9AO14904 365 aa8.67□□□□□ -1.02
VCL-206ENST00000623461 GM2AP17900 193 aa8.67□□□□□ -1.02
VCL-206ENST00000623461 SLC36A3Q495N2 470 aa8.67□□□□□ -1.02
VCL-206ENST00000623461 CEP97Q8IW35 865 aa8.67□□□□□ -1.02
VCL-206ENST00000623461 PSD4Q8NDX1 1056 aa8.67□□□□□ -1.02
VCL-206ENST00000623461 CHDHQ8NE62 594 aaPredicted RBP8.67□□□□□ -1.02
VCL-206ENST00000623461 NDNFQ8TB73 568 aa8.67□□□□□ -1.02
VCL-206ENST00000623461 ZNF510Q9Y2H8 683 aa8.67□□□□□ -1.02
VCL-206ENST00000623461 OR10H1Q9Y4A9 318 aa8.67□□□□□ -1.02
VCL-206ENST00000623461 ALPPP05187 535 aa8.67□□□□□ -1.02
VCL-206ENST00000623461 GPR1P46091 355 aa8.67□□□□□ -1.02
VCL-206ENST00000623461 PRMT2P55345 433 aa8.67□□□□□ -1.02
VCL-206ENST00000623461 CDKL1Q00532 357 aa8.67□□□□□ -1.02
VCL-206ENST00000623461 OGDHQ02218 1023 aa8.67□□□□□ -1.02
VCL-206ENST00000623461 SNTA1Q13424 505 aa8.67□□□□□ -1.02
VCL-206ENST00000623461 FAM189A2Q15884 450 aa8.67□□□□□ -1.02
VCL-206ENST00000623461 CYBRD1Q53TN4 286 aa8.67□□□□□ -1.02
VCL-206ENST00000623461 MSANTD2Q6P1R3 559 aa8.67□□□□□ -1.02
VCL-206ENST00000623461 BLOC1S3Q6QNY0 202 aa8.67□□□□□ -1.02
VCL-206ENST00000623461 GAL3ST3Q96A11 431 aa8.67□□□□□ -1.02
VCL-206ENST00000623461 CMTM7Q96FZ5 175 aa8.67□□□□□ -1.02
VCL-206ENST00000623461 P2RX2Q9UBL9 471 aa8.67□□□□□ -1.02
VCL-206ENST00000623461 FBXL21Q9UKT6 434 aa8.67□□□□□ -1.02
VCL-206ENST00000623461 TLR6Q9Y2C9 796 aa8.67□□□□□ -1.02
VCL-206ENST00000623461 C1orf196B1AJZ1 125 aa8.66□□□□□ -1.02
VCL-206ENST00000623461 ETV4P43268 484 aa8.66□□□□□ -1.02
VCL-206ENST00000623461 EVX2Q03828 476 aa8.66□□□□□ -1.02
VCL-206ENST00000623461 NIPAL4Q0D2K0 466 aa8.66□□□□□ -1.02
VCL-206ENST00000623461 PPP1R8Q12972 351 aaKnown RBP8.66□□□□□ -1.02
VCL-206ENST00000623461 NPRL3Q12980 569 aa8.66□□□□□ -1.02
VCL-206ENST00000623461 GPRC6AQ5T6X5 926 aa8.66□□□□□ -1.02
VCL-206ENST00000623461 TCEAL3Q969E4 200 aa8.66□□□□□ -1.02
VCL-206ENST00000623461 HMCESQ96FZ2 354 aa8.66□□□□□ -1.02
VCL-206ENST00000623461 SLC32A1Q9H598 525 aa8.66□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 90 ms