RNA–Protein interactions for RNA: ENST00000596814.5

VRK3-212, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 1,736 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-212ENST00000596814 GRK6P43250 576 aa14.07□□□□□ -0.16
VRK3-212ENST00000596814 NEK2P51955 445 aa14.07□□□□□ -0.16
VRK3-212ENST00000596814 OR1D5P58170 312 aa14.07□□□□□ -0.16
VRK3-212ENST00000596814 PHEXP78562 749 aa14.07□□□□□ -0.16
VRK3-212ENST00000596814 GPLD1P80108 840 aa14.07□□□□□ -0.16
VRK3-212ENST00000596814 SPEM2Q0P670 501 aa14.07□□□□□ -0.16
VRK3-212ENST00000596814 RBBP5Q15291 538 aaKnown RBP14.07□□□□□ -0.16
VRK3-212ENST00000596814 LSM12Q3MHD2 195 aaKnown RBP14.07□□□□□ -0.16
VRK3-212ENST00000596814 IRGCQ6NXR0 463 aa14.07□□□□□ -0.16
VRK3-212ENST00000596814 GUSBP11Q6P575 273 aa14.07□□□□□ -0.16
VRK3-212ENST00000596814 TRIM46Q7Z4K8 759 aa14.07□□□□□ -0.16
VRK3-212ENST00000596814 ALYREFQ86V81 257 aaKnown RBP14.07□□□□□ -0.16
VRK3-212ENST00000596814 OR2T11Q8NH01 316 aa14.07□□□□□ -0.16
VRK3-212ENST00000596814 CEP70Q8NHQ1 597 aa14.07□□□□□ -0.16
VRK3-212ENST00000596814 HUS1BQ8NHY5 278 aa14.07□□□□□ -0.16
VRK3-212ENST00000596814 NAT6Q93015 286 aa14.07□□□□□ -0.16
VRK3-212ENST00000596814 ZMYND15Q9H091 742 aa14.07□□□□□ -0.16
VRK3-212ENST00000596814 ABCG4Q9H172 646 aa14.07□□□□□ -0.16
VRK3-212ENST00000596814 NT5DC2Q9H857 520 aa14.07□□□□□ -0.16
VRK3-212ENST00000596814 EVA1BQ9NVM1 165 aa14.07□□□□□ -0.16
VRK3-212ENST00000596814 NCDNQ9UBB6 729 aa14.07□□□□□ -0.16
VRK3-212ENST00000596814 HEY2Q9UBP5 337 aa14.07□□□□□ -0.16
VRK3-212ENST00000596814 KLHL20Q9Y2M5 609 aa14.07□□□□□ -0.16
VRK3-212ENST00000596814 TRBC2A0A5B9 178 aa14.07□□□□□ -0.16
VRK3-212ENST00000596814 FEZF1A0PJY2 475 aa14.07□□□□□ -0.16
VRK3-212ENST00000596814 SERTM1A2A2V5 107 aa14.07□□□□□ -0.16
VRK3-212ENST00000596814 CPED1A4D0V7 1026 aa14.07□□□□□ -0.16
VRK3-212ENST00000596814 E9PBE3 544 aa14.07□□□□□ -0.16
VRK3-212ENST00000596814 HAT1O14929 419 aa14.07□□□□□ -0.16
VRK3-212ENST00000596814 ZW10O43264 779 aa14.07□□□□□ -0.16
VRK3-212ENST00000596814 NRP2O60462 931 aa14.07□□□□□ -0.16
VRK3-212ENST00000596814 KLHL41O60662 606 aa14.07□□□□□ -0.16
VRK3-212ENST00000596814 DCTN3O75935 186 aa14.07□□□□□ -0.16
VRK3-212ENST00000596814 NBL1P41271 181 aa14.07□□□□□ -0.16
VRK3-212ENST00000596814 DAB2P98082 770 aa14.07□□□□□ -0.16
VRK3-212ENST00000596814 CSTF3Q12996 717 aaKnown RBP14.07□□□□□ -0.16
VRK3-212ENST00000596814 NR6A1Q15406 480 aa14.07□□□□□ -0.16
VRK3-212ENST00000596814 PROX2Q3B8N5 592 aa14.07□□□□□ -0.16
VRK3-212ENST00000596814 ADNP2Q6IQ32 1131 aa14.07□□□□□ -0.16
VRK3-212ENST00000596814 PAQR7Q86WK9 346 aa14.07□□□□□ -0.16
VRK3-212ENST00000596814 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP14.07□□□□□ -0.16
VRK3-212ENST00000596814 TBC1D19Q8N5T2 526 aa14.07□□□□□ -0.16
VRK3-212ENST00000596814 Q8N9G6 341 aaPredicted RBP14.07□□□□□ -0.16
VRK3-212ENST00000596814 PPM1MQ96MI6 270 aa14.07□□□□□ -0.16
VRK3-212ENST00000596814 MTERF1Q99551 399 aaKnown RBP14.07□□□□□ -0.16
VRK3-212ENST00000596814 EDEM2Q9BV94 578 aa14.07□□□□□ -0.16
VRK3-212ENST00000596814 ACPTQ9BZG2 426 aa14.07□□□□□ -0.16
VRK3-212ENST00000596814 AKTIPQ9H8T0 292 aa14.07□□□□□ -0.16
VRK3-212ENST00000596814 BRF2Q9HAW0 419 aa14.07□□□□□ -0.16
VRK3-212ENST00000596814 TRIM33Q9UPN9 1127 aa14.07□□□□□ -0.16
VRK3-212ENST00000596814 BTBD3Q9Y2F9 522 aa14.07□□□□□ -0.16
VRK3-212ENST00000596814 TSC22D4Q9Y3Q8 395 aa14.07□□□□□ -0.16
VRK3-212ENST00000596814 KLK4Q9Y5K2 254 aa14.07□□□□□ -0.16
VRK3-212ENST00000596814 OR2A25A4D2G3 310 aa14.06□□□□□ -0.16
VRK3-212ENST00000596814 EME2A4GXA9 379 aaPredicted RBP14.06□□□□□ -0.16
VRK3-212ENST00000596814 CAPN5O15484 640 aaPredicted RBP14.06□□□□□ -0.16
VRK3-212ENST00000596814 FLRT2O43155 660 aa14.06□□□□□ -0.16
VRK3-212ENST00000596814 TNFSF14O43557 240 aa14.06□□□□□ -0.16
VRK3-212ENST00000596814 OR1F1O43749 312 aa14.06□□□□□ -0.16
VRK3-212ENST00000596814 LRP3O75074 770 aa14.06□□□□□ -0.16
VRK3-212ENST00000596814 LMNAP02545 664 aaKnown RBP14.06□□□□□ -0.16
VRK3-212ENST00000596814 HSD3B1P14060 373 aa14.06□□□□□ -0.16
VRK3-212ENST00000596814 CDH3P22223 829 aa14.06□□□□□ -0.16
VRK3-212ENST00000596814 HSD3B2P26439 372 aa14.06□□□□□ -0.16
VRK3-212ENST00000596814 LSSP48449 732 aa14.06□□□□□ -0.16
VRK3-212ENST00000596814 HMGCS1Q01581 520 aa14.06□□□□□ -0.16
VRK3-212ENST00000596814 ATP6AP1LQ52LC2 224 aa14.06□□□□□ -0.16
VRK3-212ENST00000596814 NKAIN2Q5VXU1 208 aa14.06□□□□□ -0.16
VRK3-212ENST00000596814 FIGLAQ6QHK4 219 aa14.06□□□□□ -0.16
VRK3-212ENST00000596814 Q6ZSR9 355 aa14.06□□□□□ -0.16
VRK3-212ENST00000596814 LARP4Q71RC2 724 aaKnown RBP eCLIP14.06□□□□□ -0.16
VRK3-212ENST00000596814 SPRED1Q7Z699 444 aa14.06□□□□□ -0.16
VRK3-212ENST00000596814 PLD3Q8IV08 490 aa14.06□□□□□ -0.16
VRK3-212ENST00000596814 RNF175Q8N4F7 328 aa14.06□□□□□ -0.16
VRK3-212ENST00000596814 GBP7Q8N8V2 638 aaPredicted RBP14.06□□□□□ -0.16
VRK3-212ENST00000596814 NCSTNQ92542 709 aa14.06□□□□□ -0.16
VRK3-212ENST00000596814 RAB33BQ9H082 229 aa14.06□□□□□ -0.16
VRK3-212ENST00000596814 RHBGQ9H310 441 aa14.06□□□□□ -0.16
VRK3-212ENST00000596814 SEMA6CQ9H3T2 930 aa14.06□□□□□ -0.16
VRK3-212ENST00000596814 DMRT3Q9NQL9 472 aa14.06□□□□□ -0.16
VRK3-212ENST00000596814 SEMA4GQ9NTN9 838 aa14.06□□□□□ -0.16
VRK3-212ENST00000596814 EPHA6Q9UF33 1036 aa14.06□□□□□ -0.16
VRK3-212ENST00000596814 GIMAP2Q9UG22 337 aa14.06□□□□□ -0.16
VRK3-212ENST00000596814 ADGRE2Q9UHX3 823 aa14.06□□□□□ -0.16
VRK3-212ENST00000596814 CCL27Q9Y4X3 112 aa14.06□□□□□ -0.16
VRK3-212ENST00000596814 ASXL3Q9C0F0 2248 aa14.06□□□□□ -0.16
VRK3-212ENST00000596814 RP1P56715 2156 aa14.06□□□□□ -0.16
VRK3-212ENST00000596814 MUC6Q6W4X9 2439 aa14.05□□□□□ -0.16
VRK3-212ENST00000596814 MDC1Q14676 2089 aaKnown RBP14.05□□□□□ -0.16
VRK3-212ENST00000596814 ANKDD1BA6NHY2 528 aa14.05□□□□□ -0.16
VRK3-212ENST00000596814 MAGEB17A8MXT2 336 aa14.05□□□□□ -0.16
VRK3-212ENST00000596814 FOXE1O00358 373 aaPredicted RBP14.05□□□□□ -0.16
VRK3-212ENST00000596814 LSM1O15116 133 aaKnown RBP14.05□□□□□ -0.16
VRK3-212ENST00000596814 B4GAT1O43505 415 aa14.05□□□□□ -0.16
VRK3-212ENST00000596814 PRR35P0CG20 571 aa14.05□□□□□ -0.16
VRK3-212ENST00000596814 CKMT1AP12532 417 aa14.05□□□□□ -0.16
VRK3-212ENST00000596814 PVRP15151 417 aa14.05□□□□□ -0.16
VRK3-212ENST00000596814 EZRP15311 586 aaKnown RBP14.05□□□□□ -0.16
VRK3-212ENST00000596814 SERPINB1P30740 379 aa14.05□□□□□ -0.16
VRK3-212ENST00000596814 PIK3CBP42338 1070 aa14.05□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms