RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 TBX6O95947 436 aaPredicted RBP24.09■■□□□ 1.45
SHMT1-207ENST00000580002 GFERP55789 205 aa24.09■■□□□ 1.45
SHMT1-207ENST00000580002 CFHR1Q03591 330 aa24.09■■□□□ 1.45
SHMT1-207ENST00000580002 ZIC1Q15915 447 aa24.09■■□□□ 1.45
SHMT1-207ENST00000580002 PERM1Q5SV97 790 aa24.09■■□□□ 1.45
SHMT1-207ENST00000580002 ZNF425Q6IV72 752 aa24.09■■□□□ 1.45
SHMT1-207ENST00000580002 TMIGD1Q6UXZ0 262 aa24.09■■□□□ 1.45
SHMT1-207ENST00000580002 PRR23CQ6ZRP0 262 aa24.09■■□□□ 1.45
SHMT1-207ENST00000580002 RIPOR1Q6ZS17 1223 aa24.09■■□□□ 1.45
SHMT1-207ENST00000580002 EFL1Q7Z2Z2 1120 aaKnown RBP24.09■■□□□ 1.45
SHMT1-207ENST00000580002 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP24.09■■□□□ 1.45
SHMT1-207ENST00000580002 CEP70Q8NHQ1 597 aa24.09■■□□□ 1.45
SHMT1-207ENST00000580002 CCDC28BQ9BUN5 200 aa24.09■■□□□ 1.45
SHMT1-207ENST00000580002 PCDHGA11Q9Y5H2 935 aa24.09■■□□□ 1.45
SHMT1-207ENST00000580002 RP1P56715 2156 aa24.09■■□□□ 1.45
SHMT1-207ENST00000580002 LSM1O15116 133 aaKnown RBP24.08■■□□□ 1.45
SHMT1-207ENST00000580002 OR1F1O43749 312 aa24.08■■□□□ 1.45
SHMT1-207ENST00000580002 NUDT21O43809 227 aaKnown RBP24.08■■□□□ 1.45
SHMT1-207ENST00000580002 RETP07949 1114 aa24.08■■□□□ 1.45
SHMT1-207ENST00000580002 PRR35P0CG20 571 aa24.08■■□□□ 1.45
SHMT1-207ENST00000580002 GLB1P16278 677 aa24.08■■□□□ 1.45
SHMT1-207ENST00000580002 BCL6P41182 706 aa24.08■■□□□ 1.45
SHMT1-207ENST00000580002 PPM1FP49593 454 aaPredicted RBP24.08■■□□□ 1.45
SHMT1-207ENST00000580002 RPS13P62277 151 aaKnown RBP24.08■■□□□ 1.45
SHMT1-207ENST00000580002 ABATP80404 500 aa24.08■■□□□ 1.45
SHMT1-207ENST00000580002 AMZ1Q400G9 498 aa24.08■■□□□ 1.45
SHMT1-207ENST00000580002 C6orf136Q5SQH8 315 aa24.08■■□□□ 1.45
SHMT1-207ENST00000580002 CCDC74AQ96AQ1 378 aa24.08■■□□□ 1.45
SHMT1-207ENST00000580002 SLC22A18Q96BI1 424 aa24.08■■□□□ 1.45
SHMT1-207ENST00000580002 AIF1LQ9BQI0 150 aa24.08■■□□□ 1.45
SHMT1-207ENST00000580002 C1orf50Q9BV19 199 aa24.08■■□□□ 1.45
SHMT1-207ENST00000580002 DUSP23Q9BVJ7 150 aa24.08■■□□□ 1.45
SHMT1-207ENST00000580002 LDHAL6BQ9BYZ2 381 aaPredicted RBP24.08■■□□□ 1.45
SHMT1-207ENST00000580002 SAR1AQ9NR31 198 aa24.08■■□□□ 1.45
SHMT1-207ENST00000580002 TGFB1P01137 390 aa24.08■■□□□ 1.44
SHMT1-207ENST00000580002 SPEM2Q0P670 501 aa24.08■■□□□ 1.44
SHMT1-207ENST00000580002 NR6A1Q15406 480 aa24.08■■□□□ 1.44
SHMT1-207ENST00000580002 RFTN2Q52LD8 501 aaPredicted RBP24.08■■□□□ 1.44
SHMT1-207ENST00000580002 PAGE2BQ5JRK9 111 aa24.08■■□□□ 1.44
SHMT1-207ENST00000580002 IRGCQ6NXR0 463 aa24.08■■□□□ 1.44
SHMT1-207ENST00000580002 FIGLAQ6QHK4 219 aa24.08■■□□□ 1.44
SHMT1-207ENST00000580002 USP53Q70EK8 1073 aa24.08■■□□□ 1.44
SHMT1-207ENST00000580002 PAQR7Q86WK9 346 aa24.08■■□□□ 1.44
SHMT1-207ENST00000580002 NCSTNQ92542 709 aa24.08■■□□□ 1.44
SHMT1-207ENST00000580002 ERP27Q96DN0 273 aa24.08■■□□□ 1.44
SHMT1-207ENST00000580002 TMEM184CQ9NVA4 438 aa24.08■■□□□ 1.44
SHMT1-207ENST00000580002 POMT2Q9UKY4 750 aa24.08■■□□□ 1.44
SHMT1-207ENST00000580002 IGHV1OR21-1A0A087WYE8 117 aa24.07■■□□□ 1.44
SHMT1-207ENST00000580002 YKT6O15498 198 aa24.07■■□□□ 1.44
SHMT1-207ENST00000580002 SH3BP5O60239 455 aa24.07■■□□□ 1.44
SHMT1-207ENST00000580002 PCDHGA12O60330 932 aa24.07■■□□□ 1.44
SHMT1-207ENST00000580002 CTSVO60911 334 aa24.07■■□□□ 1.44
SHMT1-207ENST00000580002 CAPZBP47756 277 aa24.07■■□□□ 1.44
SHMT1-207ENST00000580002 ATXN3P54252 364 aaPredicted RBP24.07■■□□□ 1.44
SHMT1-207ENST00000580002 DIO3P55073 304 aa24.07■■□□□ 1.44
SHMT1-207ENST00000580002 CYP4F3Q08477 520 aa24.07■■□□□ 1.44
SHMT1-207ENST00000580002 HIST2H2ACQ16777 129 aaPredicted RBP24.07■■□□□ 1.44
SHMT1-207ENST00000580002 HIST2H2AA3Q6FI13 130 aa24.07■■□□□ 1.44
SHMT1-207ENST00000580002 FBXO42Q6P3S6 717 aa24.07■■□□□ 1.44
SHMT1-207ENST00000580002 FAM92BQ6ZTR7 304 aa24.07■■□□□ 1.44
SHMT1-207ENST00000580002 AVL9Q8NBF6 648 aa24.07■■□□□ 1.44
SHMT1-207ENST00000580002 APIPQ96GX9 242 aa24.07■■□□□ 1.44
SHMT1-207ENST00000580002 PRM3Q9NNZ6 103 aa24.07■■□□□ 1.44
SHMT1-207ENST00000580002 TMEM9Q9P0T7 183 aa24.07■■□□□ 1.44
SHMT1-207ENST00000580002 ENTPD2Q9Y5L3 495 aa24.07■■□□□ 1.44
SHMT1-207ENST00000580002 ERICH4A6NGS2 130 aa24.06■■□□□ 1.44
SHMT1-207ENST00000580002 SAP18O00422 153 aaKnown RBP24.06■■□□□ 1.44
SHMT1-207ENST00000580002 CDX4O14627 284 aaPredicted RBP24.06■■□□□ 1.44
SHMT1-207ENST00000580002 ALPPL2P10696 532 aa24.06■■□□□ 1.44
SHMT1-207ENST00000580002 ST6GAL1P15907 406 aa24.06■■□□□ 1.44
SHMT1-207ENST00000580002 LAPTM5Q13571 262 aa24.06■■□□□ 1.44
SHMT1-207ENST00000580002 AP5B1Q2VPB7 878 aa24.06■■□□□ 1.44
SHMT1-207ENST00000580002 TRPM8Q7Z2W7 1104 aa24.06■■□□□ 1.44
SHMT1-207ENST00000580002 TREML1Q86YW5 311 aa24.06■■□□□ 1.44
SHMT1-207ENST00000580002 KRT78Q8N1N4 520 aa24.06■■□□□ 1.44
SHMT1-207ENST00000580002 MAGEB10Q96LZ2 347 aaPredicted RBP24.06■■□□□ 1.44
SHMT1-207ENST00000580002 LRRC37BQ96QE4 947 aa24.06■■□□□ 1.44
SHMT1-207ENST00000580002 MAP3K3Q99759 626 aa24.06■■□□□ 1.44
SHMT1-207ENST00000580002 OR51B5Q9H339 312 aa24.06■■□□□ 1.44
SHMT1-207ENST00000580002 SLC12A4Q9UP95 1085 aa24.06■■□□□ 1.44
SHMT1-207ENST00000580002 RALGAPA1Q6GYQ0 2036 aa24.06■■□□□ 1.44
SHMT1-207ENST00000580002 CCT8L1PA6NM43 557 aa24.06■■□□□ 1.44
SHMT1-207ENST00000580002 SLC28A1O00337 649 aa24.06■■□□□ 1.44
SHMT1-207ENST00000580002 CAPN5O15484 640 aaPredicted RBP24.06■■□□□ 1.44
SHMT1-207ENST00000580002 HCRTR1O43613 425 aa24.06■■□□□ 1.44
SHMT1-207ENST00000580002 SERPINA6P08185 405 aa24.06■■□□□ 1.44
SHMT1-207ENST00000580002 NR0B2Q15466 257 aa24.06■■□□□ 1.44
SHMT1-207ENST00000580002 IMPG1Q17R60 797 aa24.06■■□□□ 1.44
SHMT1-207ENST00000580002 SLC5A12Q1EHB4 618 aa24.06■■□□□ 1.44
SHMT1-207ENST00000580002 ARMC6Q6NXE6 501 aa24.06■■□□□ 1.44
SHMT1-207ENST00000580002 CHSY3Q70JA7 882 aa24.06■■□□□ 1.44
SHMT1-207ENST00000580002 DGLUCYQ7Z3D6 616 aa24.06■■□□□ 1.44
SHMT1-207ENST00000580002 NUDT8Q8WV74 236 aa24.06■■□□□ 1.44
SHMT1-207ENST00000580002 ATOH1Q92858 354 aaPredicted RBP24.06■■□□□ 1.44
SHMT1-207ENST00000580002 TGM7Q96PF1 710 aa24.06■■□□□ 1.44
SHMT1-207ENST00000580002 AICDAQ9GZX7 198 aa24.06■■□□□ 1.44
SHMT1-207ENST00000580002 DMRT3Q9NQL9 472 aa24.06■■□□□ 1.44
SHMT1-207ENST00000580002 KLHL3Q9UH77 587 aa24.06■■□□□ 1.44
SHMT1-207ENST00000580002 TNFSF14O43557 240 aa24.05■■□□□ 1.44
SHMT1-207ENST00000580002 RGS14O43566 566 aa24.05■■□□□ 1.44
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms