RNA–Protein interactions for RNA: ENST00000557933.5

LDLR-205, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LDLR, Length 2,941 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-205ENST00000557933 FAM47E-STBD1D6RA91 191 aa11.94□□□□□ -0.5
LDLR-205ENST00000557933 PCDH7O60245 1069 aa11.94□□□□□ -0.5
LDLR-205ENST00000557933 EPOP01588 193 aa11.94□□□□□ -0.5
LDLR-205ENST00000557933 S100A5P33763 92 aa11.94□□□□□ -0.5
LDLR-205ENST00000557933 KDELR2P33947 212 aa11.94□□□□□ -0.5
LDLR-205ENST00000557933 SOX3P41225 446 aa11.94□□□□□ -0.5
LDLR-205ENST00000557933 PTGER3P43115 390 aa11.94□□□□□ -0.5
LDLR-205ENST00000557933 CTSKP43235 329 aa11.94□□□□□ -0.5
LDLR-205ENST00000557933 MTA1Q13330 715 aa11.94□□□□□ -0.5
LDLR-205ENST00000557933 ACOX1Q15067 660 aa11.94□□□□□ -0.5
LDLR-205ENST00000557933 PCBP2Q15366 365 aaKnown RBP eCLIP11.94□□□□□ -0.58e-6■■■■□ 24
LDLR-205ENST00000557933 BCL2A1Q16548 175 aa11.94□□□□□ -0.5
LDLR-205ENST00000557933 POM121L1PQ3SYA9 428 aa11.94□□□□□ -0.5
LDLR-205ENST00000557933 LEXMQ3ZCV2 418 aa11.94□□□□□ -0.5
LDLR-205ENST00000557933 RTP2Q5QGT7 225 aa11.94□□□□□ -0.5
LDLR-205ENST00000557933 THOC7Q6I9Y2 204 aaKnown RBP11.94□□□□□ -0.5
LDLR-205ENST00000557933 STX19Q8N4C7 294 aa11.94□□□□□ -0.5
LDLR-205ENST00000557933 SVOPQ8N4V2 548 aa11.94□□□□□ -0.5
LDLR-205ENST00000557933 FAM193BQ96PV7 902 aaPredicted RBP11.94□□□□□ -0.5
LDLR-205ENST00000557933 CTRCQ99895 268 aa11.94□□□□□ -0.5
LDLR-205ENST00000557933 CLSTN3Q9BQT9 956 aa11.94□□□□□ -0.5
LDLR-205ENST00000557933 EMILIN2Q9BXX0 1053 aa11.94□□□□□ -0.5
LDLR-205ENST00000557933 IL1RAPQ9NPH3 570 aa11.94□□□□□ -0.5
LDLR-205ENST00000557933 ANKRD36A6QL64 1941 aa11.94□□□□□ -0.5
LDLR-205ENST00000557933 TRBV5-3A0A0A0MS03 114 aa11.94□□□□□ -0.5
LDLR-205ENST00000557933 KMOO15229 486 aa11.94□□□□□ -0.5
LDLR-205ENST00000557933 ACSL4O60488 711 aa11.94□□□□□ -0.5
LDLR-205ENST00000557933 KCNK5O95279 499 aa11.94□□□□□ -0.5
LDLR-205ENST00000557933 SOX14O95416 240 aa11.94□□□□□ -0.5
LDLR-205ENST00000557933 KRT75O95678 551 aa11.94□□□□□ -0.5
LDLR-205ENST00000557933 NPPAP01160 153 aa11.94□□□□□ -0.5
LDLR-205ENST00000557933 HOXB8P17481 243 aaPredicted RBP11.94□□□□□ -0.5
LDLR-205ENST00000557933 CR2P20023 1033 aa11.94□□□□□ -0.5
LDLR-205ENST00000557933 PIK3CBP42338 1070 aa11.94□□□□□ -0.5
LDLR-205ENST00000557933 KIR3DL1P43629 444 aa11.94□□□□□ -0.5
LDLR-205ENST00000557933 CRYBA2P53672 197 aa11.94□□□□□ -0.5
LDLR-205ENST00000557933 ST3GAL4Q11206 333 aa11.94□□□□□ -0.5
LDLR-205ENST00000557933 TSTQ16762 297 aaKnown RBP11.94□□□□□ -0.5
LDLR-205ENST00000557933 CAPN13Q6MZZ7 669 aaPredicted RBP11.94□□□□□ -0.5
LDLR-205ENST00000557933 NEK5Q6P3R8 708 aa11.94□□□□□ -0.5
LDLR-205ENST00000557933 GLB1LQ6UWU2 654 aa11.94□□□□□ -0.5
LDLR-205ENST00000557933 ABI3BPQ7Z7G0 1075 aa11.94□□□□□ -0.5
LDLR-205ENST00000557933 ZNF675Q8TD23 568 aa11.94□□□□□ -0.5
LDLR-205ENST00000557933 PHF10Q8WUB8 498 aaKnown RBP11.94□□□□□ -0.5
LDLR-205ENST00000557933 GGHQ92820 318 aa11.94□□□□□ -0.5
LDLR-205ENST00000557933 TMEM203Q969S6 136 aa11.94□□□□□ -0.5
LDLR-205ENST00000557933 CCM2Q9BSQ5 444 aa11.94□□□□□ -0.5
LDLR-205ENST00000557933 ADGRE3Q9BY15 652 aa11.94□□□□□ -0.5
LDLR-205ENST00000557933 NUAK2Q9H093 628 aa11.94□□□□□ -0.5
LDLR-205ENST00000557933 P2RY12Q9H244 342 aa11.94□□□□□ -0.5
LDLR-205ENST00000557933 TRIM39Q9HCM9 518 aa11.94□□□□□ -0.5
LDLR-205ENST00000557933 SH3BP4Q9P0V3 963 aa11.94□□□□□ -0.5
LDLR-205ENST00000557933 KLHL3Q9UH77 587 aa11.94□□□□□ -0.5
LDLR-205ENST00000557933 NDRG4Q9ULP0 352 aaKnown RBP11.94□□□□□ -0.5
LDLR-205ENST00000557933 METTL15A6NJ78 407 aa11.93□□□□□ -0.5
LDLR-205ENST00000557933 PDZK1P1A8MUH7 402 aa11.93□□□□□ -0.5
LDLR-205ENST00000557933 KPNA5O15131 536 aa11.93□□□□□ -0.5
LDLR-205ENST00000557933 IDH3BO43837 385 aa11.93□□□□□ -0.5
LDLR-205ENST00000557933 RETP07949 1114 aa11.93□□□□□ -0.5
LDLR-205ENST00000557933 ACVR2AP27037 513 aa11.93□□□□□ -0.5
LDLR-205ENST00000557933 DNAJA1P31689 397 aaKnown RBP11.93□□□□□ -0.5
LDLR-205ENST00000557933 HTR7P34969 479 aa11.93□□□□□ -0.5
LDLR-205ENST00000557933 CA8P35219 290 aa11.93□□□□□ -0.5
LDLR-205ENST00000557933 YBEYP58557 167 aaPredicted RBP11.93□□□□□ -0.5
LDLR-205ENST00000557933 HKDC1Q2TB90 917 aa11.93□□□□□ -0.5
LDLR-205ENST00000557933 TRIM60Q495X7 471 aa11.93□□□□□ -0.5
LDLR-205ENST00000557933 SNAP47Q5SQN1 464 aa11.93□□□□□ -0.5
LDLR-205ENST00000557933 MEX3DQ86XN8 651 aaKnown RBP11.93□□□□□ -0.5
LDLR-205ENST00000557933 PTOV1Q86YD1 416 aa11.93□□□□□ -0.5
LDLR-205ENST00000557933 TRIM48Q8IWZ4 208 aa11.93□□□□□ -0.5
LDLR-205ENST00000557933 SLC38A4Q969I6 547 aa11.93□□□□□ -0.5
LDLR-205ENST00000557933 RDH12Q96NR8 316 aa11.93□□□□□ -0.5
LDLR-205ENST00000557933 CNPPD1Q9BV87 410 aa11.93□□□□□ -0.5
LDLR-205ENST00000557933 TNPO3Q9Y5L0 923 aaKnown RBP11.93□□□□□ -0.5
LDLR-205ENST00000557933 CKAP5Q14008 2032 aa11.93□□□□□ -0.5
LDLR-205ENST00000557933 LOC110117498-PIK3R3F6TDL0 507 aa11.93□□□□□ -0.5
LDLR-205ENST00000557933 GAPDHSO14556 408 aaPredicted RBP11.93□□□□□ -0.5
LDLR-205ENST00000557933 KIAA0513O60268 411 aa11.93□□□□□ -0.5
LDLR-205ENST00000557933 CLDN9O95484 217 aa11.93□□□□□ -0.5
LDLR-205ENST00000557933 VNN2O95498 520 aa11.93□□□□□ -0.5
LDLR-205ENST00000557933 MYCP01106 439 aaPredicted RBP11.93□□□□□ -0.5
LDLR-205ENST00000557933 ATF6P18850 670 aa11.93□□□□□ -0.5
LDLR-205ENST00000557933 CRATP43155 626 aa11.93□□□□□ -0.5
LDLR-205ENST00000557933 CAP1Q01518 475 aa11.93□□□□□ -0.5
LDLR-205ENST00000557933 VMACQ2NL98 169 aa11.93□□□□□ -0.5
LDLR-205ENST00000557933 ZBTB2Q8N680 514 aa11.93□□□□□ -0.5
LDLR-205ENST00000557933 MED8Q96G25 268 aa11.93□□□□□ -0.5
LDLR-205ENST00000557933 SLC22A12Q96S37 553 aa11.93□□□□□ -0.5
LDLR-205ENST00000557933 N6AMT1Q9Y5N5 214 aa11.93□□□□□ -0.5
LDLR-205ENST00000557933 MTMR11A4FU01 709 aa11.93□□□□□ -0.5
LDLR-205ENST00000557933 PABPN1LA6NDY0 278 aaKnown RBP11.93□□□□□ -0.5
LDLR-205ENST00000557933 H3BNC9 293 aa11.93□□□□□ -0.5
LDLR-205ENST00000557933 NUAK1O60285 661 aa11.93□□□□□ -0.5
LDLR-205ENST00000557933 KRT8P05787 483 aa11.93□□□□□ -0.5
LDLR-205ENST00000557933 ZNF7P17097 686 aaPredicted RBP11.93□□□□□ -0.5
LDLR-205ENST00000557933 RGS4P49798 205 aa11.93□□□□□ -0.5
LDLR-205ENST00000557933 SLAMF1Q13291 335 aa11.93□□□□□ -0.5
LDLR-205ENST00000557933 NFATC2Q13469 925 aa11.93□□□□□ -0.5
LDLR-205ENST00000557933 GAB1Q13480 694 aa11.93□□□□□ -0.5
LDLR-205ENST00000557933 UGT8Q16880 541 aa11.93□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms