RNA–Protein interactions for RNA: ENST00000540447.5

YBX3-208, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 6,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-208ENST00000540447 FXYD6P3P58550 94 aa8.53□□□□□ -1.04
YBX3-208ENST00000540447 RAB8AP61006 207 aa8.53□□□□□ -1.04
YBX3-208ENST00000540447 STXBP1P61764 594 aaKnown RBP8.53□□□□□ -1.04
YBX3-208ENST00000540447 SSX7Q7RTT5 188 aa8.53□□□□□ -1.04
YBX3-208ENST00000540447 NRARPQ7Z6K4 114 aa8.53□□□□□ -1.04
YBX3-208ENST00000540447 CELF2-AS1Q8N7Q2 184 aa8.53□□□□□ -1.04
YBX3-208ENST00000540447 NDC1Q9BTX1 674 aa8.53□□□□□ -1.04
YBX3-208ENST00000540447 ZFR2Q9UPR6 939 aaKnown RBP8.53□□□□□ -1.04
YBX3-208ENST00000540447 EXOSC1Q9Y3B2 195 aaKnown RBP8.53□□□□□ -1.04
YBX3-208ENST00000540447 ADAM18Q9Y3Q7 739 aa8.53□□□□□ -1.04
YBX3-208ENST00000540447 A0A1W2PQ09 198 aa8.53□□□□□ -1.04
YBX3-208ENST00000540447 PPP1R2P9O14990 202 aa8.53□□□□□ -1.04
YBX3-208ENST00000540447 CASC3O15234 703 aaKnown RBP8.53□□□□□ -1.04
YBX3-208ENST00000540447 IFNA1P01562 189 aa8.53□□□□□ -1.04
YBX3-208ENST00000540447 CETPP11597 493 aa8.53□□□□□ -1.04
YBX3-208ENST00000540447 BMP2P12643 396 aa8.53□□□□□ -1.04
YBX3-208ENST00000540447 MAOAP21397 527 aa8.53□□□□□ -1.04
YBX3-208ENST00000540447 CSKP41240 450 aa8.53□□□□□ -1.04
YBX3-208ENST00000540447 IRF9Q00978 393 aa8.53□□□□□ -1.04
YBX3-208ENST00000540447 OPCMLQ14982 345 aa8.53□□□□□ -1.04
YBX3-208ENST00000540447 BAK1Q16611 211 aa8.53□□□□□ -1.04
YBX3-208ENST00000540447 DNAJB3Q8WWF6 145 aa8.53□□□□□ -1.04
YBX3-208ENST00000540447 TMEM74Q96NL1 305 aa8.53□□□□□ -1.04
YBX3-208ENST00000540447 VRTNQ9H8Y1 702 aa8.53□□□□□ -1.04
YBX3-208ENST00000540447 ZNF358Q9NW07 568 aa8.53□□□□□ -1.04
YBX3-208ENST00000540447 FLRT1Q9NZU1 646 aa8.53□□□□□ -1.04
YBX3-208ENST00000540447 NPHP4O75161 1426 aaPredicted RBP8.53□□□□□ -1.04
YBX3-208ENST00000540447 LCHNA4D1U4 455 aa8.53□□□□□ -1.04
YBX3-208ENST00000540447 CREG1O75629 220 aa8.53□□□□□ -1.04
YBX3-208ENST00000540447 CNTN5O94779 1100 aa8.53□□□□□ -1.04
YBX3-208ENST00000540447 EPOP01588 193 aa8.53□□□□□ -1.04
YBX3-208ENST00000540447 FGBP02675 491 aa8.53□□□□□ -1.04
YBX3-208ENST00000540447 ADH1AP07327 375 aa8.53□□□□□ -1.04
YBX3-208ENST00000540447 STSP08842 583 aa8.53□□□□□ -1.04
YBX3-208ENST00000540447 BMP4P12644 408 aa8.53□□□□□ -1.04
YBX3-208ENST00000540447 RAB6AP20340 208 aa8.53□□□□□ -1.04
YBX3-208ENST00000540447 EDNRAP25101 427 aa8.53□□□□□ -1.04
YBX3-208ENST00000540447 BCL2L1Q07817 233 aa8.53□□□□□ -1.04
YBX3-208ENST00000540447 TMEM41BQ5BJD5 291 aa8.53□□□□□ -1.04
YBX3-208ENST00000540447 COQ5Q5HYK3 327 aa8.53□□□□□ -1.04
YBX3-208ENST00000540447 OOSP2Q86WS3 158 aa8.53□□□□□ -1.04
YBX3-208ENST00000540447 ZNF227Q86WZ6 799 aa8.53□□□□□ -1.04
YBX3-208ENST00000540447 CLEC10AQ8IUN9 316 aa8.53□□□□□ -1.04
YBX3-208ENST00000540447 SLC44A3Q8N4M1 653 aa8.53□□□□□ -1.04
YBX3-208ENST00000540447 AVL9Q8NBF6 648 aa8.53□□□□□ -1.04
YBX3-208ENST00000540447 LPAR1Q92633 364 aa8.53□□□□□ -1.04
YBX3-208ENST00000540447 GIMAP5Q96F15 307 aa8.53□□□□□ -1.04
YBX3-208ENST00000540447 P2RY11Q96G91 374 aa8.53□□□□□ -1.04
YBX3-208ENST00000540447 ADAM2Q99965 735 aa8.53□□□□□ -1.04
YBX3-208ENST00000540447 BRINP2Q9C0B6 783 aa8.53□□□□□ -1.04
YBX3-208ENST00000540447 MRPL15Q9P015 296 aaKnown RBP8.53□□□□□ -1.04
YBX3-208ENST00000540447 HACL1Q9UJ83 578 aa8.53□□□□□ -1.04
YBX3-208ENST00000540447 C14orf166Q9Y224 244 aaKnown RBP8.53□□□□□ -1.04
YBX3-208ENST00000540447 ASB4Q9Y574 426 aa8.53□□□□□ -1.04
YBX3-208ENST00000540447 HSPE1-MOB4S4R3N1 261 aa8.53□□□□□ -1.04
YBX3-208ENST00000540447 LOC105369274A0A096LPK9 316 aa8.53□□□□□ -1.04
YBX3-208ENST00000540447 FLRT2O43155 660 aa8.53□□□□□ -1.04
YBX3-208ENST00000540447 GM2AP17900 193 aa8.53□□□□□ -1.04
YBX3-208ENST00000540447 CD247P20963 164 aa8.53□□□□□ -1.04
YBX3-208ENST00000540447 PLEKHN1Q494U1 663 aaPredicted RBP8.53□□□□□ -1.04
YBX3-208ENST00000540447 OR4N4Q8N0Y3 316 aa8.53□□□□□ -1.04
YBX3-208ENST00000540447 DDX51Q8N8A6 666 aaKnown RBP eCLIP8.53□□□□□ -1.04
YBX3-208ENST00000540447 OR2AP1Q8NGE2 309 aa8.53□□□□□ -1.04
YBX3-208ENST00000540447 COPS8Q99627 209 aa8.53□□□□□ -1.04
YBX3-208ENST00000540447 SDCBP2Q9H190 292 aa8.53□□□□□ -1.04
YBX3-208ENST00000540447 NT5DC2Q9H857 520 aa8.53□□□□□ -1.04
YBX3-208ENST00000540447 FBRSQ9HAH7 460 aa8.53□□□□□ -1.04
YBX3-208ENST00000540447 SMCO4Q9NRQ5 59 aa8.53□□□□□ -1.04
YBX3-208ENST00000540447 PCDHGB2Q9Y5G2 931 aa8.53□□□□□ -1.04
YBX3-208ENST00000540447 ADGBQ8N7X0 1667 aa8.53□□□□□ -1.04
YBX3-208ENST00000540447 DNMBPQ6XZF7 1577 aa8.52□□□□□ -1.04
YBX3-208ENST00000540447 A0A087WZY1 265 aa8.52□□□□□ -1.04
YBX3-208ENST00000540447 PSMD9O00233 223 aa8.52□□□□□ -1.04
YBX3-208ENST00000540447 TLX2O43763 284 aaPredicted RBP8.52□□□□□ -1.04
YBX3-208ENST00000540447 OR4F21O95013 312 aa8.52□□□□□ -1.04
YBX3-208ENST00000540447 DIRAS1O95057 198 aa8.52□□□□□ -1.04
YBX3-208ENST00000540447 RFC2P35250 354 aa8.52□□□□□ -1.04
YBX3-208ENST00000540447 GNALP38405 381 aa8.52□□□□□ -1.04
YBX3-208ENST00000540447 PRR5P85299 388 aa8.52□□□□□ -1.04
YBX3-208ENST00000540447 NFATC4Q14934 902 aa8.52□□□□□ -1.04
YBX3-208ENST00000540447 FAM183BPQ6ZVS7 135 aa8.52□□□□□ -1.04
YBX3-208ENST00000540447 TRMT11Q7Z4G4 463 aaKnown RBP8.52□□□□□ -1.04
YBX3-208ENST00000540447 KCTD20Q7Z5Y7 419 aa8.52□□□□□ -1.04
YBX3-208ENST00000540447 CSGALNACT1Q8TDX6 532 aa8.52□□□□□ -1.04
YBX3-208ENST00000540447 EDEM1Q92611 657 aa8.52□□□□□ -1.04
YBX3-208ENST00000540447 FRZBQ92765 325 aa8.52□□□□□ -1.04
YBX3-208ENST00000540447 AZIN2Q96A70 460 aa8.52□□□□□ -1.04
YBX3-208ENST00000540447 ACDQ96AP0 544 aa8.52□□□□□ -1.04
YBX3-208ENST00000540447 NELL2Q99435 816 aa8.52□□□□□ -1.04
YBX3-208ENST00000540447 POLR1EQ9GZS1 481 aaKnown RBP8.52□□□□□ -1.04
YBX3-208ENST00000540447 OR6C2Q9NZP2 312 aa8.52□□□□□ -1.04
YBX3-208ENST00000540447 CACNG2Q9Y698 323 aa8.52□□□□□ -1.04
YBX3-208ENST00000540447 CBX4O00257 560 aa8.52□□□□□ -1.05
YBX3-208ENST00000540447 FANCGO15287 622 aa8.52□□□□□ -1.05
YBX3-208ENST00000540447 PRAF2O60831 178 aa8.52□□□□□ -1.05
YBX3-208ENST00000540447 KAT7O95251 611 aa8.52□□□□□ -1.05
YBX3-208ENST00000540447 SFTPBP07988 381 aa8.52□□□□□ -1.05
YBX3-208ENST00000540447 RHOCP08134 193 aa8.52□□□□□ -1.05
YBX3-208ENST00000540447 GOT1P17174 413 aa8.52□□□□□ -1.05
YBX3-208ENST00000540447 SREBF1P36956 1147 aa8.52□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms