RNA–Protein interactions for RNA: ENST00000481409.1

USP39-215, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-215ENST00000481409 ASIC5Q9NY37 505 aa9.77□□□□□ -0.85
USP39-215ENST00000481409 SPHK1Q9NYA1 384 aa9.77□□□□□ -0.85
USP39-215ENST00000481409 AHSPQ9NZD4 102 aa9.77□□□□□ -0.85
USP39-215ENST00000481409 CIDEBQ9UHD4 219 aa9.77□□□□□ -0.85
USP39-215ENST00000481409 MAPRE3Q9UPY8 281 aa9.77□□□□□ -0.85
USP39-215ENST00000481409 TIMM22Q9Y584 194 aa9.77□□□□□ -0.85
USP39-215ENST00000481409 RNF215Q9Y6U7 377 aa9.77□□□□□ -0.85
USP39-215ENST00000481409 VCANP13611 3396 aa9.77□□□□□ -0.85
USP39-215ENST00000481409 MUC3AQ02505 3323 aa9.76□□□□□ -0.85
USP39-215ENST00000481409 IGHV1OR21-1A0A087WYE8 117 aa9.76□□□□□ -0.85
USP39-215ENST00000481409 PRAMEF33A0A0G2JMD5 474 aa9.76□□□□□ -0.85
USP39-215ENST00000481409 A0A1B0GTL3 188 aa9.76□□□□□ -0.85
USP39-215ENST00000481409 TLCD2A6NGC4 264 aa9.76□□□□□ -0.85
USP39-215ENST00000481409 URADA6NGE7 173 aa9.76□□□□□ -0.85
USP39-215ENST00000481409 TMEM233B4DJY2 109 aa9.76□□□□□ -0.85
USP39-215ENST00000481409 EBAG9O00559 213 aa9.76□□□□□ -0.85
USP39-215ENST00000481409 TXNDC9O14530 226 aa9.76□□□□□ -0.85
USP39-215ENST00000481409 SIGLEC6O43699 453 aa9.76□□□□□ -0.85
USP39-215ENST00000481409 PRAMEF4O60810 478 aa9.76□□□□□ -0.85
USP39-215ENST00000481409 SKAP2O75563 359 aaPredicted RBP9.76□□□□□ -0.85
USP39-215ENST00000481409 SEMA3DO95025 777 aa9.76□□□□□ -0.85
USP39-215ENST00000481409 C9P02748 559 aa9.76□□□□□ -0.85
USP39-215ENST00000481409 CD22P20273 847 aa9.76□□□□□ -0.85
USP39-215ENST00000481409 GRIA3P42263 894 aa9.76□□□□□ -0.85
USP39-215ENST00000481409 TSFMP43897 325 aaKnown RBP9.76□□□□□ -0.85
USP39-215ENST00000481409 SCTRP47872 440 aa9.76□□□□□ -0.85
USP39-215ENST00000481409 ERVK-8P63133 956 aa9.76□□□□□ -0.85
USP39-215ENST00000481409 EMX2Q04743 252 aa9.76□□□□□ -0.85
USP39-215ENST00000481409 ABRAXAS2Q15018 415 aa9.76□□□□□ -0.85
USP39-215ENST00000481409 LPAL2Q16609 132 aa9.76□□□□□ -0.85
USP39-215ENST00000481409 PROX2Q3B8N5 592 aa9.76□□□□□ -0.85
USP39-215ENST00000481409 LSM12Q3MHD2 195 aaKnown RBP9.76□□□□□ -0.85
USP39-215ENST00000481409 SLC9B1Q4ZJI4 515 aa9.76□□□□□ -0.85
USP39-215ENST00000481409 TMEM35AQ53FP2 167 aa9.76□□□□□ -0.85
USP39-215ENST00000481409 SPIN4Q56A73 249 aa9.76□□□□□ -0.85
USP39-215ENST00000481409 ZC3H12BQ5HYM0 836 aaKnown RBP9.76□□□□□ -0.85
USP39-215ENST00000481409 CATSPEREQ5SY80 951 aa9.76□□□□□ -0.85
USP39-215ENST00000481409 PRAMEF9Q5VWM5 478 aa9.76□□□□□ -0.85
USP39-215ENST00000481409 NIPAL1Q6NVV3 410 aa9.76□□□□□ -0.85
USP39-215ENST00000481409 CHSY3Q70JA7 882 aa9.76□□□□□ -0.85
USP39-215ENST00000481409 MAVSQ7Z434 540 aa9.76□□□□□ -0.85
USP39-215ENST00000481409 PAQR7Q86WK9 346 aa9.76□□□□□ -0.85
USP39-215ENST00000481409 ZNF655Q8N720 491 aaPredicted RBP9.76□□□□□ -0.85
USP39-215ENST00000481409 PRSS33Q8NF86 280 aa9.76□□□□□ -0.85
USP39-215ENST00000481409 BAHD1Q8TBE0 780 aaPredicted RBP9.76□□□□□ -0.85
USP39-215ENST00000481409 ATOH1Q92858 354 aaPredicted RBP9.76□□□□□ -0.85
USP39-215ENST00000481409 TUBGCP3Q96CW5 907 aa9.76□□□□□ -0.85
USP39-215ENST00000481409 CMTM7Q96FZ5 175 aa9.76□□□□□ -0.85
USP39-215ENST00000481409 TCTN2Q96GX1 697 aa9.76□□□□□ -0.85
USP39-215ENST00000481409 KCNA7Q96RP8 456 aa9.76□□□□□ -0.85
USP39-215ENST00000481409 DPH7Q9BTV6 452 aa9.76□□□□□ -0.85
USP39-215ENST00000481409 ACAT2Q9BWD1 397 aa9.76□□□□□ -0.85
USP39-215ENST00000481409 TBC1D10AQ9BXI6 508 aa9.76□□□□□ -0.85
USP39-215ENST00000481409 ABCG4Q9H172 646 aa9.76□□□□□ -0.85
USP39-215ENST00000481409 TUBB1Q9H4B7 451 aa9.76□□□□□ -0.85
USP39-215ENST00000481409 IL21RQ9HBE5 538 aa9.76□□□□□ -0.85
USP39-215ENST00000481409 ENAMQ9NRM1 1142 aa9.76□□□□□ -0.85
USP39-215ENST00000481409 ABCF3Q9NUQ8 709 aa9.76□□□□□ -0.85
USP39-215ENST00000481409 C1orf109Q9NX04 203 aa9.76□□□□□ -0.85
USP39-215ENST00000481409 SEMA5BQ9P283 1151 aa9.76□□□□□ -0.85
USP39-215ENST00000481409 VPS29Q9UBQ0 182 aa9.76□□□□□ -0.85
USP39-215ENST00000481409 ZFP69BQ9UJL9 534 aa9.76□□□□□ -0.85
USP39-215ENST00000481409 WBP11Q9Y2W2 641 aaKnown RBP9.76□□□□□ -0.85
USP39-215ENST00000481409 FIS1Q9Y3D6 152 aa9.76□□□□□ -0.85
USP39-215ENST00000481409 CCL27Q9Y4X3 112 aa9.76□□□□□ -0.85
USP39-215ENST00000481409 AP1M2Q9Y6Q5 423 aa9.76□□□□□ -0.85
USP39-215ENST00000481409 MN1Q10571 1320 aaPredicted RBP9.76□□□□□ -0.85
USP39-215ENST00000481409 IGKV1-8A0A0C4DH67 115 aa9.75□□□□□ -0.85
USP39-215ENST00000481409 LNP1A1A4G5 178 aa9.75□□□□□ -0.85
USP39-215ENST00000481409 PROB1E7EW31 1015 aa9.75□□□□□ -0.85
USP39-215ENST00000481409 H7BY64 318 aa9.75□□□□□ -0.85
USP39-215ENST00000481409 TRIM38O00635 465 aa9.75□□□□□ -0.85
USP39-215ENST00000481409 LSM1O15116 133 aaKnown RBP9.75□□□□□ -0.85
USP39-215ENST00000481409 UBDO15205 165 aa9.75□□□□□ -0.85
USP39-215ENST00000481409 SRPX2O60687 465 aaPredicted RBP9.75□□□□□ -0.85
USP39-215ENST00000481409 PDYNP01213 254 aa9.75□□□□□ -0.85
USP39-215ENST00000481409 LINC00032P0C843 101 aa9.75□□□□□ -0.85
USP39-215ENST00000481409 MSL3P1P0C860 447 aa9.75□□□□□ -0.85
USP39-215ENST00000481409 CDK4P11802 303 aa9.75□□□□□ -0.85
USP39-215ENST00000481409 IDO1P14902 403 aa9.75□□□□□ -0.85
USP39-215ENST00000481409 CKMT2P17540 419 aa9.75□□□□□ -0.85
USP39-215ENST00000481409 VARSP26640 1264 aaKnown RBP9.75□□□□□ -0.85
USP39-215ENST00000481409 PSMB5P28074 263 aa9.75□□□□□ -0.85
USP39-215ENST00000481409 EPHA3P29320 983 aa9.75□□□□□ -0.85
USP39-215ENST00000481409 TGM3Q08188 693 aa9.75□□□□□ -0.85
USP39-215ENST00000481409 ILKQ13418 452 aa9.75□□□□□ -0.85
USP39-215ENST00000481409 TUBB3Q13509 450 aa9.75□□□□□ -0.85
USP39-215ENST00000481409 PWP1Q13610 501 aa9.75□□□□□ -0.85
USP39-215ENST00000481409 NR6A1Q15406 480 aa9.75□□□□□ -0.85
USP39-215ENST00000481409 KIAA1614Q5VZ46 1190 aa9.75□□□□□ -0.85
USP39-215ENST00000481409 CYB5D1Q6P9G0 228 aa9.75□□□□□ -0.85
USP39-215ENST00000481409 FIGLAQ6QHK4 219 aa9.75□□□□□ -0.85
USP39-215ENST00000481409 Q6ZSR9 355 aa9.75□□□□□ -0.85
USP39-215ENST00000481409 ADCK2Q7Z695 626 aa9.75□□□□□ -0.85
USP39-215ENST00000481409 SPRED1Q7Z699 444 aa9.75□□□□□ -0.85
USP39-215ENST00000481409 GATAD2AQ86YP4 633 aa9.75□□□□□ -0.85
USP39-215ENST00000481409 C2orf73Q8N5S3 287 aaPredicted RBP9.75□□□□□ -0.85
USP39-215ENST00000481409 CPSF7Q8N684 471 aaKnown RBP9.75□□□□□ -0.85
USP39-215ENST00000481409 DCBLD1Q8N8Z6 715 aa9.75□□□□□ -0.85
USP39-215ENST00000481409 MFSD9Q8NBP5 474 aa9.75□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 127.9 ms