RNA–Protein interactions for RNA: ENST00000437679.3

LIMS3-201, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LIMS3, Length 1,220 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-201ENST00000437679 ANXA5P08758 320 aa14.48□□□□□ -0.09
LIMS3-201ENST00000437679 CDH1P12830 882 aa14.48□□□□□ -0.09
LIMS3-201ENST00000437679 NPPBP16860 134 aa14.48□□□□□ -0.09
LIMS3-201ENST00000437679 FBLP22087 321 aaKnown RBP14.48□□□□□ -0.09
LIMS3-201ENST00000437679 CCL11P51671 97 aa14.48□□□□□ -0.09
LIMS3-201ENST00000437679 CSNK1G2P78368 415 aa14.48□□□□□ -0.09
LIMS3-201ENST00000437679 OCA2Q04671 838 aa14.48□□□□□ -0.09
LIMS3-201ENST00000437679 ATP1A4Q13733 1029 aa14.48□□□□□ -0.09
LIMS3-201ENST00000437679 TSNQ15631 228 aaKnown RBP14.48□□□□□ -0.09
LIMS3-201ENST00000437679 NKG7Q16617 165 aa14.48□□□□□ -0.09
LIMS3-201ENST00000437679 NDUFA9Q16795 377 aa14.48□□□□□ -0.09
LIMS3-201ENST00000437679 PPP1R3AQ16821 1122 aa14.48□□□□□ -0.09
LIMS3-201ENST00000437679 GLE1Q53GS7 698 aaKnown RBP14.48□□□□□ -0.09
LIMS3-201ENST00000437679 TCTN3Q6NUS6 607 aa14.48□□□□□ -0.09
LIMS3-201ENST00000437679 PRICKLE2Q7Z3G6 844 aa14.48□□□□□ -0.09
LIMS3-201ENST00000437679 MRGPREQ86SM8 312 aa14.48□□□□□ -0.09
LIMS3-201ENST00000437679 PTRH1Q86Y79 214 aaKnown RBP14.48□□□□□ -0.09
LIMS3-201ENST00000437679 ANKRD49Q8WVL7 239 aa14.48□□□□□ -0.09
LIMS3-201ENST00000437679 IFT81Q8WYA0 676 aa14.48□□□□□ -0.09
LIMS3-201ENST00000437679 MVB12AQ96EY5 273 aa14.48□□□□□ -0.09
LIMS3-201ENST00000437679 FER1L6-AS2Q96M78 137 aa14.48□□□□□ -0.09
LIMS3-201ENST00000437679 EGFL8Q99944 293 aa14.48□□□□□ -0.09
LIMS3-201ENST00000437679 DERL2Q9GZP9 239 aa14.48□□□□□ -0.09
LIMS3-201ENST00000437679 TSPYL1Q9H0U9 437 aa14.48□□□□□ -0.09
LIMS3-201ENST00000437679 SYNPO2LQ9H987 977 aa14.48□□□□□ -0.09
LIMS3-201ENST00000437679 G3BP2Q9UN86 482 aaKnown RBP14.48□□□□□ -0.09
LIMS3-201ENST00000437679 SH2B3Q9UQQ2 575 aa14.48□□□□□ -0.09
LIMS3-201ENST00000437679 OARD1Q9Y530 152 aa14.48□□□□□ -0.09
LIMS3-201ENST00000437679 SLC28A2O43868 658 aa14.47□□□□□ -0.09
LIMS3-201ENST00000437679 UMODP07911 640 aa14.47□□□□□ -0.09
LIMS3-201ENST00000437679 CCDC166P0CW27 439 aa14.47□□□□□ -0.09
LIMS3-201ENST00000437679 PLA2G2AP14555 144 aa14.47□□□□□ -0.09
LIMS3-201ENST00000437679 PHBP35232 272 aa14.47□□□□□ -0.09
LIMS3-201ENST00000437679 HNMTP50135 292 aa14.47□□□□□ -0.09
LIMS3-201ENST00000437679 CCR8P51685 355 aa14.47□□□□□ -0.09
LIMS3-201ENST00000437679 FOXL2P58012 376 aa14.47□□□□□ -0.09
LIMS3-201ENST00000437679 RAB10P61026 200 aa14.47□□□□□ -0.09
LIMS3-201ENST00000437679 CDKL1Q00532 357 aa14.47□□□□□ -0.09
LIMS3-201ENST00000437679 ZXDCQ2QGD7 858 aaPredicted RBP14.47□□□□□ -0.09
LIMS3-201ENST00000437679 DTWD1Q8N5C7 304 aa14.47□□□□□ -0.09
LIMS3-201ENST00000437679 TBC1D19Q8N5T2 526 aa14.47□□□□□ -0.09
LIMS3-201ENST00000437679 CEP112Q8N8E3 955 aa14.47□□□□□ -0.09
LIMS3-201ENST00000437679 NACC2Q96BF6 587 aa14.47□□□□□ -0.09
LIMS3-201ENST00000437679 SLC25A23Q9BV35 468 aa14.47□□□□□ -0.09
LIMS3-201ENST00000437679 YIPF2Q9BWQ6 316 aa14.47□□□□□ -0.09
LIMS3-201ENST00000437679 CTSFQ9UBX1 484 aa14.47□□□□□ -0.09
LIMS3-201ENST00000437679 ZNF282Q9UDV7 671 aaPredicted RBP14.47□□□□□ -0.09
LIMS3-201ENST00000437679 DMGDHQ9UI17 866 aaKnown RBP14.47□□□□□ -0.09
LIMS3-201ENST00000437679 TP53TG5Q9Y2B4 290 aa14.47□□□□□ -0.09
LIMS3-201ENST00000437679 DYRK1BQ9Y463 629 aa14.47□□□□□ -0.09
LIMS3-201ENST00000437679 FEZF1A0PJY2 475 aa14.46□□□□□ -0.09
LIMS3-201ENST00000437679 P2RX6O15547 441 aa14.46□□□□□ -0.09
LIMS3-201ENST00000437679 FAM155BO75949 473 aa14.46□□□□□ -0.09
LIMS3-201ENST00000437679 WISP3O95389 354 aaPredicted RBP14.46□□□□□ -0.09
LIMS3-201ENST00000437679 PGDP52209 483 aa14.46□□□□□ -0.09
LIMS3-201ENST00000437679 ATP6V0D1P61421 351 aa14.46□□□□□ -0.09
LIMS3-201ENST00000437679 FAM53BQ14153 422 aa14.46□□□□□ -0.09
LIMS3-201ENST00000437679 CSHL1Q14406 222 aa14.46□□□□□ -0.09
LIMS3-201ENST00000437679 SLMAPQ14BN4 828 aa14.46□□□□□ -0.09
LIMS3-201ENST00000437679 ZKSCAN8Q15776 578 aaPredicted RBP14.46□□□□□ -0.09
LIMS3-201ENST00000437679 ATG14Q6ZNE5 492 aa14.46□□□□□ -0.09
LIMS3-201ENST00000437679 ASB18Q6ZVZ8 466 aa14.46□□□□□ -0.09
LIMS3-201ENST00000437679 RAPH1Q70E73 1250 aa14.46□□□□□ -0.09
LIMS3-201ENST00000437679 PPP1R32Q7Z5V6 425 aa14.46□□□□□ -0.09
LIMS3-201ENST00000437679 THOC6Q86W42 341 aaKnown RBP14.46□□□□□ -0.09
LIMS3-201ENST00000437679 CAMKVQ8NCB2 501 aa14.46□□□□□ -0.09
LIMS3-201ENST00000437679 ABHD11Q8NFV4 315 aa14.46□□□□□ -0.09
LIMS3-201ENST00000437679 SLC5A11Q8WWX8 675 aa14.46□□□□□ -0.09
LIMS3-201ENST00000437679 MIEF2Q96C03 454 aa14.46□□□□□ -0.09
LIMS3-201ENST00000437679 MMABQ96EY8 250 aaPredicted RBP14.46□□□□□ -0.09
LIMS3-201ENST00000437679 OR4K3Q96R72 315 aa14.46□□□□□ -0.09
LIMS3-201ENST00000437679 SPSB2Q99619 263 aa14.46□□□□□ -0.09
LIMS3-201ENST00000437679 UNKQ9C0B0 810 aaKnown RBP14.46□□□□□ -0.09
LIMS3-201ENST00000437679 DRC3Q9H069 523 aa14.46□□□□□ -0.09
LIMS3-201ENST00000437679 SOX17Q9H6I2 414 aaPredicted RBP14.46□□□□□ -0.09
LIMS3-201ENST00000437679 P4HTMQ9NXG6 502 aa14.46□□□□□ -0.09
LIMS3-201ENST00000437679 PCDHGA9Q9Y5G4 932 aaKnown RBP14.46□□□□□ -0.09
LIMS3-201ENST00000437679 VSTM2BA6NLU5 285 aa14.45□□□□□ -0.1
LIMS3-201ENST00000437679 SUV39H1O43463 412 aa14.45□□□□□ -0.1
LIMS3-201ENST00000437679 STATHP02808 62 aa14.45□□□□□ -0.1
LIMS3-201ENST00000437679 NR1D1P20393 614 aa14.45□□□□□ -0.1
LIMS3-201ENST00000437679 MMP11P24347 488 aa14.45□□□□□ -0.1
LIMS3-201ENST00000437679 CRABP2P29373 138 aa14.45□□□□□ -0.1
LIMS3-201ENST00000437679 BCL6P41182 706 aa14.45□□□□□ -0.1
LIMS3-201ENST00000437679 AVPR1BP47901 424 aa14.45□□□□□ -0.1
LIMS3-201ENST00000437679 DSG2Q14126 1118 aa14.45□□□□□ -0.1
LIMS3-201ENST00000437679 EFTUD2Q15029 972 aaKnown RBP eCLIP14.45□□□□□ -0.1
LIMS3-201ENST00000437679 SHISA6Q6ZSJ9 500 aa14.45□□□□□ -0.1
LIMS3-201ENST00000437679 VN1R4Q7Z5H5 301 aa14.45□□□□□ -0.1
LIMS3-201ENST00000437679 ASPGQ86U10 573 aa14.45□□□□□ -0.1
LIMS3-201ENST00000437679 GPSM1Q86YR5 675 aa14.45□□□□□ -0.1
LIMS3-201ENST00000437679 RELL1Q8IUW5 271 aa14.45□□□□□ -0.1
LIMS3-201ENST00000437679 TCAIMQ8N3R3 496 aa14.45□□□□□ -0.1
LIMS3-201ENST00000437679 SPATA6LQ8N4H0 392 aa14.45□□□□□ -0.1
LIMS3-201ENST00000437679 MFSD9Q8NBP5 474 aa14.45□□□□□ -0.1
LIMS3-201ENST00000437679 CLEC1AQ8NC01 280 aa14.45□□□□□ -0.1
LIMS3-201ENST00000437679 STT3BQ8TCJ2 826 aa14.45□□□□□ -0.1
LIMS3-201ENST00000437679 NEIL2Q969S2 332 aa14.45□□□□□ -0.1
LIMS3-201ENST00000437679 VPS50Q96JG6 964 aa14.45□□□□□ -0.1
LIMS3-201ENST00000437679 TSNARE1Q96NA8 513 aa14.45□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms