RNA–Protein interactions for RNA: ENST00000357409.9

VPS13A-202, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 9,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-202ENST00000357409 SCARB2Q14108 478 aa7.15□□□□□ -1.27
VPS13A-202ENST00000357409 RNF43Q68DV7 783 aa7.15□□□□□ -1.27
VPS13A-202ENST00000357409 NCBP2-AS2Q69YL0 99 aa7.15□□□□□ -1.27
VPS13A-202ENST00000357409 ZCCHC12Q6PEW1 402 aa7.15□□□□□ -1.27
VPS13A-202ENST00000357409 SETD9Q8NE22 299 aa7.15□□□□□ -1.27
VPS13A-202ENST00000357409 IGSF8Q969P0 613 aa7.15□□□□□ -1.27
VPS13A-202ENST00000357409 SLC35A5Q9BS91 424 aa7.15□□□□□ -1.27
VPS13A-202ENST00000357409 DENND2DQ9H6A0 471 aaPredicted RBP7.15□□□□□ -1.27
VPS13A-202ENST00000357409 DAPL1A0PJW8 107 aa7.14□□□□□ -1.27
VPS13A-202ENST00000357409 SMCO3A2RU48 225 aa7.14□□□□□ -1.27
VPS13A-202ENST00000357409 FADS2P1A8MWK0 482 aa7.14□□□□□ -1.27
VPS13A-202ENST00000357409 S100GP29377 79 aa7.14□□□□□ -1.27
VPS13A-202ENST00000357409 NR4A2P43354 598 aa7.14□□□□□ -1.27
VPS13A-202ENST00000357409 RAB30Q15771 203 aa7.14□□□□□ -1.27
VPS13A-202ENST00000357409 DENND5AQ6IQ26 1287 aa7.14□□□□□ -1.27
VPS13A-202ENST00000357409 CEACAM20Q6UY09 585 aa7.14□□□□□ -1.27
VPS13A-202ENST00000357409 ERI1Q8IV48 349 aaKnown RBP7.14□□□□□ -1.27
VPS13A-202ENST00000357409 TEFMQ96QE5 360 aaKnown RBP7.14□□□□□ -1.27
VPS13A-202ENST00000357409 COMMD4Q9H0A8 199 aa7.14□□□□□ -1.27
VPS13A-202ENST00000357409 PRTFDC1Q9NRG1 225 aa7.14□□□□□ -1.27
VPS13A-202ENST00000357409 MED16Q9Y2X0 877 aa7.14□□□□□ -1.27
VPS13A-202ENST00000357409 BIVM-ERCC5R4GMW8 1640 aa7.14□□□□□ -1.27
VPS13A-202ENST00000357409 ZNF20P17024 532 aa7.14□□□□□ -1.27
VPS13A-202ENST00000357409 IL1RNP18510 177 aa7.14□□□□□ -1.27
VPS13A-202ENST00000357409 HNF1BP35680 557 aa7.14□□□□□ -1.27
VPS13A-202ENST00000357409 GABRB2P47870 512 aa7.14□□□□□ -1.27
VPS13A-202ENST00000357409 FOXK1P85037 733 aa7.14□□□□□ -1.27
VPS13A-202ENST00000357409 PURAQ00577 322 aaKnown RBP7.14□□□□□ -1.27
VPS13A-202ENST00000357409 NPRL3Q12980 569 aa7.14□□□□□ -1.27
VPS13A-202ENST00000357409 DEFB134Q4QY38 66 aa7.14□□□□□ -1.27
VPS13A-202ENST00000357409 SLC39A4Q6P5W5 647 aa7.14□□□□□ -1.27
VPS13A-202ENST00000357409 LIPIQ6XZB0 460 aa7.14□□□□□ -1.27
VPS13A-202ENST00000357409 LSM14AQ8ND56 463 aaKnown RBP7.14□□□□□ -1.27
VPS13A-202ENST00000357409 PPP1R14BQ96C90 147 aa7.14□□□□□ -1.27
VPS13A-202ENST00000357409 DUSP26Q9BV47 211 aa7.14□□□□□ -1.27
VPS13A-202ENST00000357409 POLR2J2Q9GZM3 115 aaKnown RBP7.14□□□□□ -1.27
VPS13A-202ENST00000357409 C8orf4Q9NR00 106 aa7.14□□□□□ -1.27
VPS13A-202ENST00000357409 MEIS3P1A6NDR6 274 aa7.14□□□□□ -1.27
VPS13A-202ENST00000357409 RENP00797 406 aa7.14□□□□□ -1.27
VPS13A-202ENST00000357409 MMP8P22894 467 aa7.14□□□□□ -1.27
VPS13A-202ENST00000357409 SLC26A3P40879 764 aa7.14□□□□□ -1.27
VPS13A-202ENST00000357409 ASPAP45381 313 aa7.14□□□□□ -1.27
VPS13A-202ENST00000357409 SLC6A11P48066 632 aa7.14□□□□□ -1.27
VPS13A-202ENST00000357409 NKAIN2Q5VXU1 208 aa7.14□□□□□ -1.27
VPS13A-202ENST00000357409 RNF111Q6ZNA4 994 aa7.14□□□□□ -1.27
VPS13A-202ENST00000357409 TRABD2AQ86V40 505 aa7.14□□□□□ -1.27
VPS13A-202ENST00000357409 PLD6Q8N2A8 252 aaKnown RBP7.14□□□□□ -1.27
VPS13A-202ENST00000357409 FKBP7Q9Y680 259 aa7.14□□□□□ -1.27
VPS13A-202ENST00000357409 CALCBP10092 127 aa7.14□□□□□ -1.27
VPS13A-202ENST00000357409 ABOP16442 354 aa7.14□□□□□ -1.27
VPS13A-202ENST00000357409 GRK5P34947 590 aa7.14□□□□□ -1.27
VPS13A-202ENST00000357409 RPS3AP61247 264 aaKnown RBP7.14□□□□□ -1.27
VPS13A-202ENST00000357409 MPP2Q14168 576 aa7.14□□□□□ -1.27
VPS13A-202ENST00000357409 FIGNQ5HY92 759 aa7.14□□□□□ -1.27
VPS13A-202ENST00000357409 C4orf32Q8N8J7 132 aa7.14□□□□□ -1.27
VPS13A-202ENST00000357409 IRF7Q92985 503 aa7.14□□□□□ -1.27
VPS13A-202ENST00000357409 NSUN5Q96P11 429 aaKnown RBP7.14□□□□□ -1.27
VPS13A-202ENST00000357409 CNTN3Q9P232 1028 aa7.14□□□□□ -1.27
VPS13A-202ENST00000357409 ERVW-1Q9UQF0 538 aa7.14□□□□□ -1.27
VPS13A-202ENST00000357409 CLTCQ00610 1675 aaKnown RBP7.14□□□□□ -1.27
VPS13A-202ENST00000357409 PI15O43692 258 aa7.14□□□□□ -1.27
VPS13A-202ENST00000357409 ANGPTL1O95841 491 aa7.14□□□□□ -1.27
VPS13A-202ENST00000357409 GNRHRP30968 328 aa7.14□□□□□ -1.27
VPS13A-202ENST00000357409 HOXA10P31260 410 aaPredicted RBP7.14□□□□□ -1.27
VPS13A-202ENST00000357409 LEPRP48357 1165 aaKnown RBP7.14□□□□□ -1.27
VPS13A-202ENST00000357409 TDGQ13569 410 aa7.14□□□□□ -1.27
VPS13A-202ENST00000357409 SLC5A9Q2M3M2 681 aa7.14□□□□□ -1.27
VPS13A-202ENST00000357409 BICRALQ6AI39 1079 aa7.14□□□□□ -1.27
VPS13A-202ENST00000357409 ABRAXAS1Q6UWZ7 409 aa7.14□□□□□ -1.27
VPS13A-202ENST00000357409 TMEM107Q6UX40 140 aa7.14□□□□□ -1.27
VPS13A-202ENST00000357409 LINC00696Q6ZRV3 163 aa7.14□□□□□ -1.27
VPS13A-202ENST00000357409 GKN2Q86XP6 184 aa7.14□□□□□ -1.27
VPS13A-202ENST00000357409 OR2AP1Q8NGE2 309 aa7.14□□□□□ -1.27
VPS13A-202ENST00000357409 OR6Q1Q8NGQ2 317 aa7.14□□□□□ -1.27
VPS13A-202ENST00000357409 TNFAIP8L1Q8WVP5 186 aa7.14□□□□□ -1.27
VPS13A-202ENST00000357409 CCM2Q9BSQ5 444 aa7.14□□□□□ -1.27
VPS13A-202ENST00000357409 NPLQ9BXD5 320 aaPredicted RBP7.14□□□□□ -1.27
VPS13A-202ENST00000357409 LDB3O75112 727 aa7.14□□□□□ -1.27
VPS13A-202ENST00000357409 TNFAIP8O95379 198 aa7.14□□□□□ -1.27
VPS13A-202ENST00000357409 RPA2P15927 270 aa7.14□□□□□ -1.27
VPS13A-202ENST00000357409 IL32P24001 234 aa7.14□□□□□ -1.27
VPS13A-202ENST00000357409 RBMS1P29558 406 aaKnown RBP7.14□□□□□ -1.27
VPS13A-202ENST00000357409 PTDSS1P48651 473 aaKnown RBP7.14□□□□□ -1.27
VPS13A-202ENST00000357409 NIPAL4Q0D2K0 466 aa7.14□□□□□ -1.27
VPS13A-202ENST00000357409 LRIT3Q3SXY7 679 aa7.14□□□□□ -1.27
VPS13A-202ENST00000357409 IL20RBQ6UXL0 311 aa7.14□□□□□ -1.27
VPS13A-202ENST00000357409 CHST14Q8NCH0 376 aa7.14□□□□□ -1.27
VPS13A-202ENST00000357409 SHDQ96IW2 340 aa7.14□□□□□ -1.27
VPS13A-202ENST00000357409 SORBS1Q9BX66 1292 aaKnown RBP7.14□□□□□ -1.27
VPS13A-202ENST00000357409 A0A0U1RQF3 1178 aa7.14□□□□□ -1.27
VPS13A-202ENST00000357409 NPIPA5E9PKD4 350 aa7.14□□□□□ -1.27
VPS13A-202ENST00000357409 NXPH3O95157 252 aa7.14□□□□□ -1.27
VPS13A-202ENST00000357409 FBXO45P0C2W1 286 aa7.14□□□□□ -1.27
VPS13A-202ENST00000357409 CDKN2BP42772 138 aa7.14□□□□□ -1.27
VPS13A-202ENST00000357409 PRKCDQ05655 676 aa7.14□□□□□ -1.27
VPS13A-202ENST00000357409 PLGLAQ15195 96 aa7.14□□□□□ -1.27
VPS13A-202ENST00000357409 BTBD16Q32M84 506 aa7.14□□□□□ -1.27
VPS13A-202ENST00000357409 PRMT9Q6P2P2 845 aa7.14□□□□□ -1.27
VPS13A-202ENST00000357409 OR52E4Q8NGH9 312 aa7.14□□□□□ -1.27
VPS13A-202ENST00000357409 KIAA1143Q96AT1 154 aaPredicted RBP7.14□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms