RNA–Protein interactions for RNA: ENST00000345005.8

CLK3-201, Transcript of CDC like kinase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLK3, Length 1,846 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-201ENST00000345005 SCHIP1Q9P0W5 487 aaPredicted RBP12.4□□□□□ -0.42
CLK3-201ENST00000345005 ANAPC2Q9UJX6 822 aa12.4□□□□□ -0.42
CLK3-201ENST00000345005 TMEM247A6NEH6 219 aa12.39□□□□□ -0.43
CLK3-201ENST00000345005 SAC3D1A6NKF1 404 aa12.39□□□□□ -0.43
CLK3-201ENST00000345005 H3BMQ9 156 aa12.39□□□□□ -0.43
CLK3-201ENST00000345005 LSM1O15116 133 aaKnown RBP12.39□□□□□ -0.43
CLK3-201ENST00000345005 SLC16A8O95907 504 aa12.39□□□□□ -0.43
CLK3-201ENST00000345005 ASGR2P07307 311 aa12.39□□□□□ -0.43
CLK3-201ENST00000345005 MYCLP1P12525 358 aaPredicted RBP12.39□□□□□ -0.43
CLK3-201ENST00000345005 CCNA2P20248 432 aa12.39□□□□□ -0.43
CLK3-201ENST00000345005 ATP6V1B2P21281 511 aa12.39□□□□□ -0.43
CLK3-201ENST00000345005 ITPKAP23677 461 aa12.39□□□□□ -0.43
CLK3-201ENST00000345005 ACADLP28330 430 aa12.39□□□□□ -0.43
CLK3-201ENST00000345005 RPS9P46781 194 aaKnown RBP12.39□□□□□ -0.43
CLK3-201ENST00000345005 STT3AP46977 705 aa12.39□□□□□ -0.43
CLK3-201ENST00000345005 DIO3P55073 304 aa12.39□□□□□ -0.43
CLK3-201ENST00000345005 NAE1Q13564 534 aa12.39□□□□□ -0.43
CLK3-201ENST00000345005 NFE2L1Q14494 772 aa12.39□□□□□ -0.43
CLK3-201ENST00000345005 SKIV2LQ15477 1246 aaKnown RBP12.39□□□□□ -0.43
CLK3-201ENST00000345005 CPSF6Q16630 551 aaKnown RBP eCLIP12.39□□□□□ -0.43
CLK3-201ENST00000345005 AP5B1Q2VPB7 878 aa12.39□□□□□ -0.43
CLK3-201ENST00000345005 RBM48Q5RL73 367 aaKnown RBP12.39□□□□□ -0.43
CLK3-201ENST00000345005 LIPJQ5W064 366 aa12.39□□□□□ -0.43
CLK3-201ENST00000345005 C16orf87Q6PH81 154 aa12.39□□□□□ -0.43
CLK3-201ENST00000345005 XKR5Q6UX68 686 aa12.39□□□□□ -0.43
CLK3-201ENST00000345005 ADGRG5Q8IZF4 528 aa12.39□□□□□ -0.43
CLK3-201ENST00000345005 MINDY2Q8NBR6 621 aa12.39□□□□□ -0.43
CLK3-201ENST00000345005 OR9I1Q8NGQ6 314 aa12.39□□□□□ -0.43
CLK3-201ENST00000345005 OR9A1PQ8NGU1 263 aa12.39□□□□□ -0.43
CLK3-201ENST00000345005 RAB2BQ8WUD1 216 aa12.39□□□□□ -0.43
CLK3-201ENST00000345005 FOXJ1Q92949 421 aa12.39□□□□□ -0.43
CLK3-201ENST00000345005 LRRC58Q96CX6 371 aa12.39□□□□□ -0.43
CLK3-201ENST00000345005 PLEKHA8Q96JA3 519 aa12.39□□□□□ -0.43
CLK3-201ENST00000345005 MRGPRX1Q96LB2 322 aa12.39□□□□□ -0.43
CLK3-201ENST00000345005 COG8Q96MW5 612 aa12.39□□□□□ -0.43
CLK3-201ENST00000345005 OR52A5Q9H2C5 316 aa12.39□□□□□ -0.43
CLK3-201ENST00000345005 SLC2A4RGQ9NR83 387 aa12.39□□□□□ -0.43
CLK3-201ENST00000345005 INTS7Q9NVH2 962 aaKnown RBP12.39□□□□□ -0.43
CLK3-201ENST00000345005 ZIM2Q9NZV7 527 aa12.39□□□□□ -0.43
CLK3-201ENST00000345005 EBF1Q9UH73 591 aa12.39□□□□□ -0.43
CLK3-201ENST00000345005 ZNF639Q9UID6 485 aa12.39□□□□□ -0.43
CLK3-201ENST00000345005 MMP17Q9ULZ9 603 aa12.39□□□□□ -0.43
CLK3-201ENST00000345005 CCL27Q9Y4X3 112 aa12.39□□□□□ -0.43
CLK3-201ENST00000345005 OR1A2Q9Y585 309 aa12.39□□□□□ -0.43
CLK3-201ENST00000345005 XIRP2A4UGR9 3374 aa12.39□□□□□ -0.43
CLK3-201ENST00000345005 NME4O00746 187 aa12.39□□□□□ -0.43
CLK3-201ENST00000345005 DLGAP1O14490 977 aa12.39□□□□□ -0.43
CLK3-201ENST00000345005 CPNE6O95741 557 aa12.39□□□□□ -0.43
CLK3-201ENST00000345005 IMPA1P29218 277 aa12.39□□□□□ -0.43
CLK3-201ENST00000345005 HALP42357 657 aa12.39□□□□□ -0.43
CLK3-201ENST00000345005 PCDH1Q08174 1060 aa12.39□□□□□ -0.43
CLK3-201ENST00000345005 CHIT1Q13231 466 aa12.39□□□□□ -0.43
CLK3-201ENST00000345005 CCINQ13939 588 aa12.39□□□□□ -0.43
CLK3-201ENST00000345005 RAB39AQ14964 217 aa12.39□□□□□ -0.43
CLK3-201ENST00000345005 CCDC85BQ15834 202 aaPredicted RBP12.39□□□□□ -0.43
CLK3-201ENST00000345005 BCL2A1Q16548 175 aa12.39□□□□□ -0.43
CLK3-201ENST00000345005 IMPG1Q17R60 797 aa12.39□□□□□ -0.43
CLK3-201ENST00000345005 PLA2G4EQ3MJ16 856 aa12.39□□□□□ -0.43
CLK3-201ENST00000345005 CCSMST1Q4G0I0 132 aa12.39□□□□□ -0.43
CLK3-201ENST00000345005 IER5LQ5T953 404 aa12.39□□□□□ -0.43
CLK3-201ENST00000345005 BROXQ5VW32 411 aa12.39□□□□□ -0.43
CLK3-201ENST00000345005 METRNLQ641Q3 311 aa12.39□□□□□ -0.43
CLK3-201ENST00000345005 NIPAL1Q6NVV3 410 aa12.39□□□□□ -0.43
CLK3-201ENST00000345005 DUS1LQ6P1R4 473 aaKnown RBP12.39□□□□□ -0.43
CLK3-201ENST00000345005 ZNF773Q6PK81 442 aa12.39□□□□□ -0.43
CLK3-201ENST00000345005 BLOC1S3Q6QNY0 202 aa12.39□□□□□ -0.43
CLK3-201ENST00000345005 LAYNQ6UX15 382 aa12.39□□□□□ -0.43
CLK3-201ENST00000345005 USP51Q70EK9 711 aa12.39□□□□□ -0.43
CLK3-201ENST00000345005 PDZD3Q86UT5 571 aa12.39□□□□□ -0.43
CLK3-201ENST00000345005 CHPT1Q8WUD6 406 aa12.39□□□□□ -0.43
CLK3-201ENST00000345005 CYGBQ8WWM9 190 aa12.39□□□□□ -0.43
CLK3-201ENST00000345005 MED8Q96G25 268 aa12.39□□□□□ -0.43
CLK3-201ENST00000345005 YIPF2Q9BWQ6 316 aa12.39□□□□□ -0.43
CLK3-201ENST00000345005 ELOVL6Q9H5J4 265 aa12.39□□□□□ -0.43
CLK3-201ENST00000345005 GPN2Q9H9Y4 310 aaPredicted RBP12.39□□□□□ -0.43
CLK3-201ENST00000345005 POLR1BQ9H9Y6 1135 aa12.39□□□□□ -0.43
CLK3-201ENST00000345005 TMEM165Q9HC07 324 aa12.39□□□□□ -0.43
CLK3-201ENST00000345005 ITM2CQ9NQX7 267 aa12.39□□□□□ -0.43
CLK3-201ENST00000345005 MAP10Q9P2G4 905 aa12.39□□□□□ -0.43
CLK3-201ENST00000345005 PRKAB1Q9Y478 270 aa12.39□□□□□ -0.43
CLK3-201ENST00000345005 KCNE1BA0A087WTH5 132 aa12.38□□□□□ -0.43
CLK3-201ENST00000345005 A0A1W2PP18 115 aa12.38□□□□□ -0.43
CLK3-201ENST00000345005 SERTM1A2A2V5 107 aa12.38□□□□□ -0.43
CLK3-201ENST00000345005 KRT87PA6NCN2 255 aa12.38□□□□□ -0.43
CLK3-201ENST00000345005 IFRD1O00458 451 aaPredicted RBP12.38□□□□□ -0.43
CLK3-201ENST00000345005 PLOD2O00469 737 aa12.38□□□□□ -0.43
CLK3-201ENST00000345005 NR5A2O00482 541 aa12.38□□□□□ -0.43
CLK3-201ENST00000345005 MAN2B1O00754 1011 aa12.38□□□□□ -0.43
CLK3-201ENST00000345005 NARSO43776 548 aaKnown RBP12.38□□□□□ -0.43
CLK3-201ENST00000345005 KCNJ13O60928 360 aa12.38□□□□□ -0.43
CLK3-201ENST00000345005 SLC22A3O75751 556 aa12.38□□□□□ -0.43
CLK3-201ENST00000345005 ALBP02768 609 aa12.38□□□□□ -0.43
CLK3-201ENST00000345005 RPN2P04844 631 aa12.38□□□□□ -0.43
CLK3-201ENST00000345005 OCM2P0CE71 109 aa12.38□□□□□ -0.43
CLK3-201ENST00000345005 OCMP0CE72 109 aaPredicted RBP12.38□□□□□ -0.43
CLK3-201ENST00000345005 SRFP11831 508 aa12.38□□□□□ -0.43
CLK3-201ENST00000345005 SLC2A4P14672 509 aa12.38□□□□□ -0.43
CLK3-201ENST00000345005 JUPP14923 745 aa12.38□□□□□ -0.43
CLK3-201ENST00000345005 GNPDA1P46926 289 aa12.38□□□□□ -0.43
CLK3-201ENST00000345005 CDH15P55291 814 aa12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 130 ms