RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 CNTN6Q9UQ52 1028 aa12.3□□□□□ -0.44
SDC3-201ENST00000336798 TMEM233B4DJY2 109 aa12.3□□□□□ -0.44
SDC3-201ENST00000336798 TLR4O00206 839 aa12.3□□□□□ -0.44
SDC3-201ENST00000336798 MEN1O00255 615 aa12.3□□□□□ -0.44
SDC3-201ENST00000336798 VILLO15195 856 aa12.3□□□□□ -0.44
SDC3-201ENST00000336798 ITGA10O75578 1167 aa12.3□□□□□ -0.44
SDC3-201ENST00000336798 CSNK2A2P19784 350 aaPredicted RBP12.3□□□□□ -0.44
SDC3-201ENST00000336798 USP43Q70EL4 1123 aa12.3□□□□□ -0.44
SDC3-201ENST00000336798 HMGN2P46Q86SG4 172 aa12.3□□□□□ -0.44
SDC3-201ENST00000336798 PCDH19Q8TAB3 1148 aa12.3□□□□□ -0.44
SDC3-201ENST00000336798 SLC22A17Q8WUG5 538 aa12.3□□□□□ -0.44
SDC3-201ENST00000336798 C7orf26Q96N11 449 aa12.3□□□□□ -0.44
SDC3-201ENST00000336798 B3GAT2Q9NPZ5 323 aa12.3□□□□□ -0.44
SDC3-201ENST00000336798 P2RX2Q9UBL9 471 aa12.3□□□□□ -0.44
SDC3-201ENST00000336798 MAP2P11137 1827 aaKnown RBP12.29□□□□□ -0.44
SDC3-201ENST00000336798 OTOL1A6NHN0 477 aaPredicted RBP12.29□□□□□ -0.44
SDC3-201ENST00000336798 C2CD4BA6NLJ0 364 aa12.29□□□□□ -0.44
SDC3-201ENST00000336798 PDLIM1O00151 329 aa12.29□□□□□ -0.44
SDC3-201ENST00000336798 GKP32189 559 aa12.29□□□□□ -0.44
SDC3-201ENST00000336798 SNU13P55769 128 aaKnown RBP12.29□□□□□ -0.44
SDC3-201ENST00000336798 MCCD1P59942 119 aaPredicted RBP12.29□□□□□ -0.44
SDC3-201ENST00000336798 TEAD2Q15562 447 aa12.29□□□□□ -0.44
SDC3-201ENST00000336798 CTU1Q7Z7A3 348 aaKnown RBP12.29□□□□□ -0.44
SDC3-201ENST00000336798 POP5Q969H6 163 aaKnown RBP12.29□□□□□ -0.44
SDC3-201ENST00000336798 MAFBQ9Y5Q3 323 aaPredicted RBP12.29□□□□□ -0.44
SDC3-201ENST00000336798 PLD2O14939 933 aa12.29□□□□□ -0.44
SDC3-201ENST00000336798 KCNJ13O60928 360 aa12.29□□□□□ -0.44
SDC3-201ENST00000336798 ECI2O75521 394 aa12.29□□□□□ -0.44
SDC3-201ENST00000336798 GPIP06744 558 aa12.29□□□□□ -0.44
SDC3-201ENST00000336798 PRKACBP22694 351 aa12.29□□□□□ -0.44
SDC3-201ENST00000336798 MEF2AQ02078 507 aaPredicted RBP12.29□□□□□ -0.44
SDC3-201ENST00000336798 TATDN1Q6P1N9 297 aa12.29□□□□□ -0.44
SDC3-201ENST00000336798 CPNE8Q86YQ8 564 aa12.29□□□□□ -0.44
SDC3-201ENST00000336798 RASGEF1CQ8N431 466 aa12.29□□□□□ -0.44
SDC3-201ENST00000336798 HSPBAP1Q96EW2 488 aa12.29□□□□□ -0.44
SDC3-201ENST00000336798 ZNF347Q96SE7 839 aa12.29□□□□□ -0.44
SDC3-201ENST00000336798 CCM2Q9BSQ5 444 aa12.29□□□□□ -0.44
SDC3-201ENST00000336798 PCDHGB7Q9Y5F8 929 aa12.29□□□□□ -0.44
SDC3-201ENST00000336798 PEX16Q9Y5Y5 336 aa12.29□□□□□ -0.44
SDC3-201ENST00000336798 VWDEQ8N2E2 1590 aa12.29□□□□□ -0.44
SDC3-201ENST00000336798 PRORSD1PA6NEY8 169 aa12.29□□□□□ -0.44
SDC3-201ENST00000336798 ITM2AO43736 263 aa12.29□□□□□ -0.44
SDC3-201ENST00000336798 CYP11A1P05108 521 aa12.29□□□□□ -0.44
SDC3-201ENST00000336798 KLK3P07288 261 aaPredicted RBP12.29□□□□□ -0.44
SDC3-201ENST00000336798 TACSTD2P09758 323 aa12.29□□□□□ -0.44
SDC3-201ENST00000336798 CD36P16671 472 aa12.29□□□□□ -0.44
SDC3-201ENST00000336798 GRIA1P42261 906 aa12.29□□□□□ -0.44
SDC3-201ENST00000336798 ASPAP45381 313 aa12.29□□□□□ -0.44
SDC3-201ENST00000336798 CD83Q01151 205 aa12.29□□□□□ -0.44
SDC3-201ENST00000336798 ECH1Q13011 328 aa12.29□□□□□ -0.44
SDC3-201ENST00000336798 DSC3Q14574 896 aa12.29□□□□□ -0.44
SDC3-201ENST00000336798 SLC10A6Q3KNW5 377 aa12.29□□□□□ -0.44
SDC3-201ENST00000336798 CDKL4Q5MAI5 379 aa12.29□□□□□ -0.44
SDC3-201ENST00000336798 ZSCAN4Q8NAM6 433 aaPredicted RBP12.29□□□□□ -0.44
SDC3-201ENST00000336798 DOK4Q8TEW6 326 aa12.29□□□□□ -0.44
SDC3-201ENST00000336798 NPLQ9BXD5 320 aaPredicted RBP12.29□□□□□ -0.44
SDC3-201ENST00000336798 MUC13Q9H3R2 512 aa12.29□□□□□ -0.44
SDC3-201ENST00000336798 DTLQ9NZJ0 730 aa12.29□□□□□ -0.44
SDC3-201ENST00000336798 VPS29Q9UBQ0 182 aa12.29□□□□□ -0.44
SDC3-201ENST00000336798 PCDHGC3Q9UN70 934 aa12.29□□□□□ -0.44
SDC3-201ENST00000336798 GLTPD2A6NH11 291 aa12.29□□□□□ -0.44
SDC3-201ENST00000336798 SLC2A2P11168 524 aaPredicted RBP12.29□□□□□ -0.44
SDC3-201ENST00000336798 CHRM1P11229 460 aaPredicted RBP12.29□□□□□ -0.44
SDC3-201ENST00000336798 VIPR1P32241 457 aa12.29□□□□□ -0.44
SDC3-201ENST00000336798 MLLT1Q03111 559 aaPredicted RBP12.29□□□□□ -0.44
SDC3-201ENST00000336798 LGI4Q8N135 537 aa12.29□□□□□ -0.44
SDC3-201ENST00000336798 DENND2DQ9H6A0 471 aaPredicted RBP12.29□□□□□ -0.44
SDC3-201ENST00000336798 ATXN7L1Q9ULK2 861 aaPredicted RBP12.29□□□□□ -0.44
SDC3-201ENST00000336798 ATRNL1Q5VV63 1379 aa12.29□□□□□ -0.44
SDC3-201ENST00000336798 FAM234BA2RU67 622 aa12.29□□□□□ -0.44
SDC3-201ENST00000336798 C11orf98E9PRG8 122 aa12.29□□□□□ -0.44
SDC3-201ENST00000336798 FAM227AF5H4B4 570 aa12.29□□□□□ -0.44
SDC3-201ENST00000336798 EI24O14681 340 aa12.29□□□□□ -0.44
SDC3-201ENST00000336798 DNAJA2O60884 412 aa12.29□□□□□ -0.44
SDC3-201ENST00000336798 MRPL3P09001 348 aaKnown RBP12.29□□□□□ -0.44
SDC3-201ENST00000336798 RGS19P49795 217 aa12.29□□□□□ -0.44
SDC3-201ENST00000336798 MAD2L1BPQ15013 274 aaPredicted RBP12.29□□□□□ -0.44
SDC3-201ENST00000336798 KHDC1Q4VXA5 237 aaKnown RBP12.29□□□□□ -0.44
SDC3-201ENST00000336798 SLC35F1Q5T1Q4 408 aa12.29□□□□□ -0.44
SDC3-201ENST00000336798 SLITRK4Q8IW52 837 aa12.29□□□□□ -0.44
SDC3-201ENST00000336798 NLGN4XQ8N0W4 816 aa12.29□□□□□ -0.44
SDC3-201ENST00000336798 POGLUT1Q8NBL1 392 aa12.29□□□□□ -0.44
SDC3-201ENST00000336798 OR5K1Q8NHB7 308 aa12.29□□□□□ -0.44
SDC3-201ENST00000336798 NIFKQ9BYG3 293 aaKnown RBP12.29□□□□□ -0.44
SDC3-201ENST00000336798 SLC5A7Q9GZV3 580 aa12.29□□□□□ -0.44
SDC3-201ENST00000336798 ANKRA2Q9H9E1 313 aa12.29□□□□□ -0.44
SDC3-201ENST00000336798 SLC2A6Q9UGQ3 507 aa12.29□□□□□ -0.44
SDC3-201ENST00000336798 PCDHGA6Q9Y5G7 932 aa12.29□□□□□ -0.44
SDC3-201ENST00000336798 CPNE6O95741 557 aa12.28□□□□□ -0.44
SDC3-201ENST00000336798 HEXBP07686 556 aa12.28□□□□□ -0.44
SDC3-201ENST00000336798 JMJD7P0C870 316 aa12.28□□□□□ -0.44
SDC3-201ENST00000336798 RAP2AP10114 183 aa12.28□□□□□ -0.44
SDC3-201ENST00000336798 TUBG1P23258 451 aa12.28□□□□□ -0.44
SDC3-201ENST00000336798 KCNQ1P51787 676 aa12.28□□□□□ -0.44
SDC3-201ENST00000336798 PNLIPRP1P54315 467 aa12.28□□□□□ -0.44
SDC3-201ENST00000336798 LAPTM4AQ15012 233 aa12.28□□□□□ -0.44
SDC3-201ENST00000336798 SLC2A7Q6PXP3 512 aa12.28□□□□□ -0.44
SDC3-201ENST00000336798 LRRTM4Q86VH4 590 aa12.28□□□□□ -0.44
SDC3-201ENST00000336798 ZNF227Q86WZ6 799 aa12.28□□□□□ -0.44
SDC3-201ENST00000336798 TMEM17Q86X19 198 aa12.28□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms