RNA–Protein interactions for RNA: ENST00000637578.1

CLN3-260, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,577 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-260ENST00000637578 HYKKA2RU49 373 aa18.38■□□□□ 0.53
CLN3-260ENST00000637578 CCNDBP1O95273 360 aa18.38■□□□□ 0.53
CLN3-260ENST00000637578 SYF2O95926 243 aaKnown RBP18.38■□□□□ 0.53
CLN3-260ENST00000637578 FDXRP22570 491 aa18.38■□□□□ 0.53
CLN3-260ENST00000637578 SLC9A5Q14940 896 aa18.38■□□□□ 0.53
CLN3-260ENST00000637578 EFTUD2Q15029 972 aaKnown RBP eCLIP18.38■□□□□ 0.533e-6■■■■□ 22
CLN3-260ENST00000637578 PRTGQ2VWP7 1150 aa18.38■□□□□ 0.53
CLN3-260ENST00000637578 HECTD2Q5U5R9 776 aa18.38■□□□□ 0.53
CLN3-260ENST00000637578 MED25Q71SY5 747 aa18.38■□□□□ 0.53
CLN3-260ENST00000637578 COX15Q7KZN9 410 aa18.38■□□□□ 0.53
CLN3-260ENST00000637578 RAB43Q86YS6 212 aa18.38■□□□□ 0.53
CLN3-260ENST00000637578 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP18.38■□□□□ 0.535e-8■■■■■ 65.3
CLN3-260ENST00000637578 CDKL2Q92772 493 aa18.38■□□□□ 0.53
CLN3-260ENST00000637578 PTERQ96BW5 349 aa18.38■□□□□ 0.53
CLN3-260ENST00000637578 CCDC138Q96M89 665 aa18.38■□□□□ 0.53
CLN3-260ENST00000637578 IP6K3Q96PC2 410 aa18.38■□□□□ 0.53
CLN3-260ENST00000637578 PARD6BQ9BYG5 372 aa18.38■□□□□ 0.53
CLN3-260ENST00000637578 WDR54Q9H977 334 aa18.38■□□□□ 0.53
CLN3-260ENST00000637578 SYNPO2LQ9H987 977 aa18.38■□□□□ 0.53
CLN3-260ENST00000637578 STOX2Q9P2F5 926 aaPredicted RBP18.38■□□□□ 0.53
CLN3-260ENST00000637578 PTRH2Q9Y3E5 179 aaKnown RBP18.38■□□□□ 0.53
CLN3-260ENST00000637578 MED13Q9UHV7 2174 aa18.38■□□□□ 0.53
CLN3-260ENST00000637578 PCSK5Q92824 1860 aa18.38■□□□□ 0.53
CLN3-260ENST00000637578 H0YGG7 62 aa18.38■□□□□ 0.53
CLN3-260ENST00000637578 MED26O95402 600 aa18.38■□□□□ 0.53
CLN3-260ENST00000637578 PDGFAP04085 211 aa18.38■□□□□ 0.53
CLN3-260ENST00000637578 UMODP07911 640 aa18.38■□□□□ 0.53
CLN3-260ENST00000637578 PIM1P11309 404 aaPredicted RBP18.38■□□□□ 0.53
CLN3-260ENST00000637578 PHBP35232 272 aa18.38■□□□□ 0.53
CLN3-260ENST00000637578 CASRP41180 1078 aa18.38■□□□□ 0.53
CLN3-260ENST00000637578 FOLR3P41439 243 aa18.38■□□□□ 0.53
CLN3-260ENST00000637578 ARF3P61204 181 aaPredicted RBP18.38■□□□□ 0.53
CLN3-260ENST00000637578 CHAF1BQ13112 559 aa18.38■□□□□ 0.53
CLN3-260ENST00000637578 ATP1A4Q13733 1029 aa18.38■□□□□ 0.53
CLN3-260ENST00000637578 STRA8Q7Z7C7 330 aa18.38■□□□□ 0.53
CLN3-260ENST00000637578 MRGPREQ86SM8 312 aa18.38■□□□□ 0.53
CLN3-260ENST00000637578 SLC26A11Q86WA9 606 aa18.38■□□□□ 0.53
CLN3-260ENST00000637578 CTAGE3PQ8IX95 158 aa18.38■□□□□ 0.53
CLN3-260ENST00000637578 NACC2Q96BF6 587 aa18.38■□□□□ 0.53
CLN3-260ENST00000637578 OR2A5Q96R48 311 aa18.38■□□□□ 0.53
CLN3-260ENST00000637578 OLFM1Q99784 485 aa18.38■□□□□ 0.53
CLN3-260ENST00000637578 MCMBPQ9BTE3 642 aa18.38■□□□□ 0.53
CLN3-260ENST00000637578 ACSS2Q9NR19 701 aa18.38■□□□□ 0.53
CLN3-260ENST00000637578 NSMCE4AQ9NXX6 385 aa18.38■□□□□ 0.53
CLN3-260ENST00000637578 UTP6Q9NYH9 597 aaKnown RBP18.38■□□□□ 0.53
CLN3-260ENST00000637578 EZRP15311 586 aaKnown RBP18.37■□□□□ 0.53
CLN3-260ENST00000637578 NR1D1P20393 614 aa18.37■□□□□ 0.53
CLN3-260ENST00000637578 IL2P60568 153 aa18.37■□□□□ 0.53
CLN3-260ENST00000637578 FAM45BPQ6NSW5 357 aa18.37■□□□□ 0.53
CLN3-260ENST00000637578 ASB18Q6ZVZ8 466 aa18.37■□□□□ 0.53
CLN3-260ENST00000637578 TRMT10CQ7L0Y3 403 aaKnown RBP18.37■□□□□ 0.53
CLN3-260ENST00000637578 TMEM151BQ8IW70 566 aa18.37■□□□□ 0.53
CLN3-260ENST00000637578 MYO1HQ8N1T3 1032 aa18.37■□□□□ 0.53
CLN3-260ENST00000637578 ARHGEF39Q8N4T4 335 aa18.37■□□□□ 0.53
CLN3-260ENST00000637578 FAM45AQ8TCE6 357 aa18.37■□□□□ 0.53
CLN3-260ENST00000637578 PDLIM5Q96HC4 596 aaKnown RBP18.37■□□□□ 0.53
CLN3-260ENST00000637578 HRH2P25021 359 aa18.36■□□□□ 0.53
CLN3-260ENST00000637578 CCL11P51671 97 aa18.36■□□□□ 0.53
CLN3-260ENST00000637578 RRADP55042 308 aa18.36■□□□□ 0.53
CLN3-260ENST00000637578 FOXL2P58012 376 aa18.36■□□□□ 0.53
CLN3-260ENST00000637578 KLRB1Q12918 225 aa18.36■□□□□ 0.53
CLN3-260ENST00000637578 TSTA3Q13630 321 aaPredicted RBP18.36■□□□□ 0.53
CLN3-260ENST00000637578 NKG7Q16617 165 aa18.36■□□□□ 0.53
CLN3-260ENST00000637578 PHKG1Q16816 387 aa18.36■□□□□ 0.53
CLN3-260ENST00000637578 ZC3HC1Q86WB0 502 aaKnown RBP18.36■□□□□ 0.53
CLN3-260ENST00000637578 PPM1NQ8N819 430 aa18.36■□□□□ 0.53
CLN3-260ENST00000637578 GPATCH11Q8N954 259 aa18.36■□□□□ 0.53
CLN3-260ENST00000637578 UHMK1Q8TAS1 419 aaKnown RBP18.36■□□□□ 0.53
CLN3-260ENST00000637578 ZDHHC19Q8WVZ1 309 aaPredicted RBP18.36■□□□□ 0.53
CLN3-260ENST00000637578 LINGO1Q96FE5 620 aa18.36■□□□□ 0.53
CLN3-260ENST00000637578 C10orf90Q96M02 699 aa18.36■□□□□ 0.53
CLN3-260ENST00000637578 FUT8Q9BYC5 575 aa18.36■□□□□ 0.53
CLN3-260ENST00000637578 ACSS3Q9H6R3 686 aa18.36■□□□□ 0.53
CLN3-260ENST00000637578 ANKRD12Q6UB98 2062 aa18.35■□□□□ 0.53
CLN3-260ENST00000637578 HEATR5BQ9P2D3 2071 aa18.35■□□□□ 0.53
CLN3-260ENST00000637578 VSTM2BA6NLU5 285 aa18.35■□□□□ 0.53
CLN3-260ENST00000637578 RIPK2O43353 540 aa18.35■□□□□ 0.53
CLN3-260ENST00000637578 OTX2P32243 289 aa18.35■□□□□ 0.53
CLN3-260ENST00000637578 PGGT1BP53609 377 aa18.35■□□□□ 0.53
CLN3-260ENST00000637578 PDAP1Q13442 181 aaKnown RBP18.35■□□□□ 0.53
CLN3-260ENST00000637578 ZXDCQ2QGD7 858 aaPredicted RBP18.35■□□□□ 0.53
CLN3-260ENST00000637578 PRMT9Q6P2P2 845 aa18.35■□□□□ 0.53
CLN3-260ENST00000637578 PPP1R32Q7Z5V6 425 aa18.35■□□□□ 0.53
CLN3-260ENST00000637578 DTWD1Q8N5C7 304 aa18.35■□□□□ 0.53
CLN3-260ENST00000637578 CYTH2Q99418 400 aa18.35■□□□□ 0.53
CLN3-260ENST00000637578 SPSB2Q99619 263 aa18.35■□□□□ 0.53
CLN3-260ENST00000637578 CPNE1Q99829 537 aa18.35■□□□□ 0.53
CLN3-260ENST00000637578 SLC25A23Q9BV35 468 aa18.35■□□□□ 0.53
CLN3-260ENST00000637578 SGPP1Q9BX95 441 aa18.35■□□□□ 0.53
CLN3-260ENST00000637578 PCBD2Q9H0N5 130 aa18.35■□□□□ 0.53
CLN3-260ENST00000637578 CCDC177Q9NQR7 707 aaPredicted RBP18.35■□□□□ 0.53
CLN3-260ENST00000637578 CUEDC1Q9NWM3 386 aaPredicted RBP18.35■□□□□ 0.53
CLN3-260ENST00000637578 PCDHGB7Q9Y5F8 929 aa18.35■□□□□ 0.53
CLN3-260ENST00000637578 CCDC88CQ9P219 2028 aa18.35■□□□□ 0.53
CLN3-260ENST00000637578 EIF2S1P05198 315 aaKnown RBP18.34■□□□□ 0.53
CLN3-260ENST00000637578 OR1D4P47884 311 aa18.34■□□□□ 0.53
CLN3-260ENST00000637578 TBPL1P62380 186 aa18.34■□□□□ 0.53
CLN3-260ENST00000637578 NAB1Q13506 487 aa18.34■□□□□ 0.53
CLN3-260ENST00000637578 MUM1Q2TAK8 710 aa18.34■□□□□ 0.53
CLN3-260ENST00000637578 AGTRAPQ6RW13 159 aa18.34■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms