RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 EFCAB11Q9BUY7 163 aa8.88□□□□□ -0.99
LDLR-210ENST00000559340 NLNQ9BYT8 704 aa8.88□□□□□ -0.99
LDLR-210ENST00000559340 IPPKQ9H8X2 491 aa8.88□□□□□ -0.99
LDLR-210ENST00000559340 EML4Q9HC35 981 aaKnown RBP8.88□□□□□ -0.99
LDLR-210ENST00000559340 PRM3Q9NNZ6 103 aa8.88□□□□□ -0.99
LDLR-210ENST00000559340 SLC17A7Q9P2U7 560 aa8.88□□□□□ -0.99
LDLR-210ENST00000559340 ADGRE2Q9UHX3 823 aa8.88□□□□□ -0.99
LDLR-210ENST00000559340 SERTAD3Q9UJW9 196 aa8.88□□□□□ -0.99
LDLR-210ENST00000559340 PLCL2Q9UPR0 1127 aa8.88□□□□□ -0.99
LDLR-210ENST00000559340 CROCCQ5TZA2 2017 aa8.88□□□□□ -0.99
LDLR-210ENST00000559340 SCN3AQ9NY46 2000 aa8.88□□□□□ -0.99
LDLR-210ENST00000559340 KMT2BQ9UMN6 2715 aaPredicted RBP8.87□□□□□ -0.99
LDLR-210ENST00000559340 IGHV5-51A0A0C4DH38 117 aa8.87□□□□□ -0.99
LDLR-210ENST00000559340 KRT87PA6NCN2 255 aa8.87□□□□□ -0.99
LDLR-210ENST00000559340 H7BY64 318 aa8.87□□□□□ -0.99
LDLR-210ENST00000559340 E2F3O00716 465 aa8.87□□□□□ -0.99
LDLR-210ENST00000559340 NPHS1O60500 1241 aa8.87□□□□□ -0.99
LDLR-210ENST00000559340 SIX3O95343 332 aaPredicted RBP8.87□□□□□ -0.99
LDLR-210ENST00000559340 CLDN9O95484 217 aa8.87□□□□□ -0.99
LDLR-210ENST00000559340 RPS17P08708 135 aaKnown RBP8.87□□□□□ -0.99
LDLR-210ENST00000559340 MSL3P1P0C860 447 aa8.87□□□□□ -0.99
LDLR-210ENST00000559340 EBLN1P0CF75 366 aa8.87□□□□□ -0.99
LDLR-210ENST00000559340 DHRS4L1P0CG22 281 aa8.87□□□□□ -0.99
LDLR-210ENST00000559340 EZRP15311 586 aaKnown RBP8.87□□□□□ -0.99
LDLR-210ENST00000559340 ST6GAL1P15907 406 aa8.87□□□□□ -0.99
LDLR-210ENST00000559340 NR1D1P20393 614 aa8.87□□□□□ -0.99
LDLR-210ENST00000559340 MAGP20916 626 aa8.87□□□□□ -0.99
LDLR-210ENST00000559340 MPSTP25325 297 aa8.87□□□□□ -0.99
LDLR-210ENST00000559340 PSMB5P28074 263 aa8.87□□□□□ -0.99
LDLR-210ENST00000559340 SERPINB1P30740 379 aa8.87□□□□□ -0.99
LDLR-210ENST00000559340 ALDH3A1P30838 453 aa8.87□□□□□ -0.99
LDLR-210ENST00000559340 CASP2P42575 452 aa8.87□□□□□ -0.99
LDLR-210ENST00000559340 GDF5P43026 501 aa8.87□□□□□ -0.99
LDLR-210ENST00000559340 ETV4P43268 484 aa8.87□□□□□ -0.99
LDLR-210ENST00000559340 SEPHS1P49903 392 aa8.87□□□□□ -0.99
LDLR-210ENST00000559340 NAGLUP54802 743 aa8.87□□□□□ -0.99
LDLR-210ENST00000559340 PKNOX1P55347 436 aa8.87□□□□□ -0.99
LDLR-210ENST00000559340 RPS15AP62244 130 aaKnown RBP8.87□□□□□ -0.99
LDLR-210ENST00000559340 PHEXP78562 749 aa8.87□□□□□ -0.99
LDLR-210ENST00000559340 CHIT1Q13231 466 aa8.87□□□□□ -0.99
LDLR-210ENST00000559340 RBBP7Q16576 425 aa8.87□□□□□ -0.99
LDLR-210ENST00000559340 C18orf21Q32NC0 220 aaPredicted RBP8.87□□□□□ -0.99
LDLR-210ENST00000559340 UNC50Q53HI1 259 aa8.87□□□□□ -0.99
LDLR-210ENST00000559340 TCTE1Q5JU00 501 aa8.87□□□□□ -0.99
LDLR-210ENST00000559340 C10orf62Q5T681 223 aaPredicted RBP8.87□□□□□ -0.99
LDLR-210ENST00000559340 TMEM164Q5U3C3 297 aa8.87□□□□□ -0.99
LDLR-210ENST00000559340 ATG16L1Q676U5 607 aa8.87□□□□□ -0.99
LDLR-210ENST00000559340 RAB11FIP2Q7L804 512 aa8.87□□□□□ -0.99
LDLR-210ENST00000559340 GOLGA7Q7Z5G4 137 aa8.87□□□□□ -0.99
LDLR-210ENST00000559340 MILR1Q7Z6M3 343 aa8.87□□□□□ -0.99
LDLR-210ENST00000559340 TMPRSS11BQ86T26 416 aa8.87□□□□□ -0.99
LDLR-210ENST00000559340 PAQR7Q86WK9 346 aa8.87□□□□□ -0.99
LDLR-210ENST00000559340 CHCHD4Q8N4Q1 142 aa8.87□□□□□ -0.99
LDLR-210ENST00000559340 OR4K1Q8NGD4 311 aa8.87□□□□□ -0.99
LDLR-210ENST00000559340 WDR36Q8NI36 951 aaKnown RBP8.87□□□□□ -0.99
LDLR-210ENST00000559340 FLVCR1-AS1Q8TAF5 88 aa8.87□□□□□ -0.99
LDLR-210ENST00000559340 RAB3IL1Q8TBN0 382 aa8.87□□□□□ -0.99
LDLR-210ENST00000559340 ZNF483Q8TF39 744 aaPredicted RBP8.87□□□□□ -0.99
LDLR-210ENST00000559340 DYDC1Q8WWB3 177 aa8.87□□□□□ -0.99
LDLR-210ENST00000559340 NEIL2Q969S2 332 aa8.87□□□□□ -0.99
LDLR-210ENST00000559340 RERGQ96A58 199 aaPredicted RBP8.87□□□□□ -0.99
LDLR-210ENST00000559340 ESAMQ96AP7 390 aa8.87□□□□□ -0.99
LDLR-210ENST00000559340 WDR34Q96EX3 536 aa8.87□□□□□ -0.99
LDLR-210ENST00000559340 SLC41A2Q96JW4 573 aa8.87□□□□□ -0.99
LDLR-210ENST00000559340 PRAP1Q96NZ9 151 aa8.87□□□□□ -0.99
LDLR-210ENST00000559340 FCRL4Q96PJ5 515 aa8.87□□□□□ -0.99
LDLR-210ENST00000559340 ZPBPQ9BS86 351 aa8.87□□□□□ -0.99
LDLR-210ENST00000559340 NTMT1Q9BV86 223 aa8.87□□□□□ -0.99
LDLR-210ENST00000559340 NT5DC2Q9H857 520 aa8.87□□□□□ -0.99
LDLR-210ENST00000559340 ACTR8Q9H981 624 aa8.87□□□□□ -0.99
LDLR-210ENST00000559340 PFDN4Q9NQP4 134 aa8.87□□□□□ -0.99
LDLR-210ENST00000559340 PCTPQ9UKL6 214 aa8.87□□□□□ -0.99
LDLR-210ENST00000559340 PCDHGA11Q9Y5H2 935 aa8.87□□□□□ -0.99
LDLR-210ENST00000559340 COL27A1Q8IZC6 1860 aaPredicted RBP8.87□□□□□ -0.99
LDLR-210ENST00000559340 KCNE1BA0A087WTH5 132 aa8.86□□□□□ -0.99
LDLR-210ENST00000559340 TRBC2A0A5B9 178 aa8.86□□□□□ -0.99
LDLR-210ENST00000559340 OR2A25A4D2G3 310 aa8.86□□□□□ -0.99
LDLR-210ENST00000559340 URADA6NGE7 173 aa8.86□□□□□ -0.99
LDLR-210ENST00000559340 ANKDD1BA6NHY2 528 aa8.86□□□□□ -0.99
LDLR-210ENST00000559340 TMEM114B3SHH9 223 aa8.86□□□□□ -0.99
LDLR-210ENST00000559340 B4E171 279 aa8.86□□□□□ -0.99
LDLR-210ENST00000559340 KIF1CO43896 1103 aaKnown RBP8.86□□□□□ -0.99
LDLR-210ENST00000559340 CRCPO75575 148 aa8.86□□□□□ -0.99
LDLR-210ENST00000559340 ENO1P06733 434 aaKnown RBP8.86□□□□□ -0.99
LDLR-210ENST00000559340 HBQ1P09105 142 aa8.86□□□□□ -0.99
LDLR-210ENST00000559340 JMJD7P0C870 316 aa8.86□□□□□ -0.99
LDLR-210ENST00000559340 CDH1P12830 882 aa8.86□□□□□ -0.99
LDLR-210ENST00000559340 AHRP35869 848 aa8.86□□□□□ -0.99
LDLR-210ENST00000559340 TSPAN7P41732 249 aa8.86□□□□□ -0.99
LDLR-210ENST00000559340 RAB15P59190 212 aa8.86□□□□□ -0.99
LDLR-210ENST00000559340 PPP1CAP62136 330 aa8.86□□□□□ -0.99
LDLR-210ENST00000559340 CSNK1G2P78368 415 aa8.86□□□□□ -0.99
LDLR-210ENST00000559340 MC2RQ01718 297 aa8.86□□□□□ -0.99
LDLR-210ENST00000559340 GALNT1Q10472 559 aaPredicted RBP8.86□□□□□ -0.99
LDLR-210ENST00000559340 LCP2Q13094 533 aa8.86□□□□□ -0.99
LDLR-210ENST00000559340 TARDBPQ13148 414 aaKnown RBP eCLIP8.86□□□□□ -0.99
LDLR-210ENST00000559340 IL11RAQ14626 422 aa8.86□□□□□ -0.99
LDLR-210ENST00000559340 PCLAFQ15004 111 aa8.86□□□□□ -0.99
LDLR-210ENST00000559340 ZXDCQ2QGD7 858 aaPredicted RBP8.86□□□□□ -0.99
LDLR-210ENST00000559340 FBXO48Q5FWF7 155 aa8.86□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms