RNA–Protein interactions for RNA: ENST00000542420.6

SS18-205, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2 BASIC

Gene SS18, Length 2,321 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-205ENST00000542420 TMEM9Q9P0T7 183 aa9.55□□□□□ -0.88
SS18-205ENST00000542420 RSL24D1Q9UHA3 163 aaKnown RBP9.55□□□□□ -0.88
SS18-205ENST00000542420 ZNHIT2Q9UHR6 403 aa9.55□□□□□ -0.88
SS18-205ENST00000542420 ATP6V1HQ9UI12 483 aa9.55□□□□□ -0.88
SS18-205ENST00000542420 CD84Q9UIB8 345 aa9.55□□□□□ -0.88
SS18-205ENST00000542420 PCDHGB4Q9UN71 923 aa9.55□□□□□ -0.88
SS18-205ENST00000542420 PCDHGB5Q9Y5G0 923 aa9.55□□□□□ -0.88
SS18-205ENST00000542420 HTTP42858 3142 aa9.55□□□□□ -0.88
SS18-205ENST00000542420 FAM149AA5PLN7 773 aa9.55□□□□□ -0.88
SS18-205ENST00000542420 TSPAN6O43657 245 aa9.55□□□□□ -0.88
SS18-205ENST00000542420 TPST1O60507 370 aa9.55□□□□□ -0.88
SS18-205ENST00000542420 PRAMEF4O60810 478 aa9.55□□□□□ -0.88
SS18-205ENST00000542420 SCN2BO60939 215 aa9.55□□□□□ -0.88
SS18-205ENST00000542420 LILRB5O75023 590 aa9.55□□□□□ -0.88
SS18-205ENST00000542420 OR6B1O95007 311 aa9.55□□□□□ -0.88
SS18-205ENST00000542420 EPN2O95208 641 aa9.55□□□□□ -0.88
SS18-205ENST00000542420 BMP1P13497 986 aa9.55□□□□□ -0.88
SS18-205ENST00000542420 EPCAMP16422 314 aa9.55□□□□□ -0.88
SS18-205ENST00000542420 DDX5P17844 614 aaKnown RBP9.55□□□□□ -0.88
SS18-205ENST00000542420 CDH2P19022 906 aaPredicted RBP9.55□□□□□ -0.88
SS18-205ENST00000542420 IMPA1P29218 277 aa9.55□□□□□ -0.88
SS18-205ENST00000542420 SERPINB1P30740 379 aa9.55□□□□□ -0.88
SS18-205ENST00000542420 HSD17B2P37059 387 aa9.55□□□□□ -0.88
SS18-205ENST00000542420 MTHFRP42898 656 aa9.55□□□□□ -0.88
SS18-205ENST00000542420 GSTM5P46439 218 aa9.55□□□□□ -0.88
SS18-205ENST00000542420 PHC1P78364 1004 aa9.55□□□□□ -0.88
SS18-205ENST00000542420 PPP2R2BQ00005 443 aa9.55□□□□□ -0.88
SS18-205ENST00000542420 ACSM2AQ08AH3 577 aa9.55□□□□□ -0.88
SS18-205ENST00000542420 DOC2AQ14183 400 aa9.55□□□□□ -0.88
SS18-205ENST00000542420 ACOX1Q15067 660 aa9.55□□□□□ -0.88
SS18-205ENST00000542420 SGO1Q5FBB7 561 aa9.55□□□□□ -0.88
SS18-205ENST00000542420 PRAMEF9Q5VWM5 478 aa9.55□□□□□ -0.88
SS18-205ENST00000542420 ACSM2BQ68CK6 577 aa9.55□□□□□ -0.88
SS18-205ENST00000542420 CCDC80Q76M96 950 aa9.55□□□□□ -0.88
SS18-205ENST00000542420 DET1Q7L5Y6 550 aa9.55□□□□□ -0.88
SS18-205ENST00000542420 PIWIL3Q7Z3Z3 882 aaKnown RBP9.55□□□□□ -0.88
SS18-205ENST00000542420 SYT12Q8IV01 421 aa9.55□□□□□ -0.88
SS18-205ENST00000542420 ERI1Q8IV48 349 aaKnown RBP9.55□□□□□ -0.88
SS18-205ENST00000542420 GOT1L1Q8NHS2 421 aaPredicted RBP9.55□□□□□ -0.88
SS18-205ENST00000542420 CHTF18Q8WVB6 975 aa9.55□□□□□ -0.88
SS18-205ENST00000542420 FIG4Q92562 907 aa9.55□□□□□ -0.88
SS18-205ENST00000542420 COQ8BQ96D53 544 aa9.55□□□□□ -0.88
SS18-205ENST00000542420 NUS1Q96E22 293 aa9.55□□□□□ -0.88
SS18-205ENST00000542420 SEPHS2Q99611 448 aa9.55□□□□□ -0.88
SS18-205ENST00000542420 HDAC8Q9BY41 377 aa9.55□□□□□ -0.88
SS18-205ENST00000542420 BHLHE41Q9C0J9 482 aaPredicted RBP9.55□□□□□ -0.88
SS18-205ENST00000542420 TRIM39Q9HCM9 518 aa9.55□□□□□ -0.88
SS18-205ENST00000542420 THG1LQ9NWX6 298 aaKnown RBP9.55□□□□□ -0.88
SS18-205ENST00000542420 LIMD1Q9UGP4 676 aa9.55□□□□□ -0.88
SS18-205ENST00000542420 C3orf18Q9UK00 162 aa9.55□□□□□ -0.88
SS18-205ENST00000542420 GPR89AB7ZAQ6 455 aa9.54□□□□□ -0.88
SS18-205ENST00000542420 G3V2T6 193 aa9.54□□□□□ -0.88
SS18-205ENST00000542420 H3BM21 787 aa9.54□□□□□ -0.88
SS18-205ENST00000542420 SCAMP2O15127 329 aaKnown RBP9.54□□□□□ -0.88
SS18-205ENST00000542420 MRPS14O60783 128 aaKnown RBP9.54□□□□□ -0.88
SS18-205ENST00000542420 C1orf105O95561 183 aa9.54□□□□□ -0.88
SS18-205ENST00000542420 GPR89BP0CG08 455 aa9.54□□□□□ -0.88
SS18-205ENST00000542420 ITGAMP11215 1152 aa9.54□□□□□ -0.88
SS18-205ENST00000542420 ATP6V1B1P15313 513 aa9.54□□□□□ -0.88
SS18-205ENST00000542420 EIF2DP41214 584 aaKnown RBP9.54□□□□□ -0.88
SS18-205ENST00000542420 TUBA3CQ13748 450 aa9.54□□□□□ -0.88
SS18-205ENST00000542420 AGERQ15109 404 aa9.54□□□□□ -0.88
SS18-205ENST00000542420 LARP7Q4G0J3 582 aaKnown RBP eCLIP9.54□□□□□ -0.88
SS18-205ENST00000542420 ZNF362Q5T0B9 420 aaPredicted RBP9.54□□□□□ -0.88
SS18-205ENST00000542420 MED27Q6P2C8 311 aa9.54□□□□□ -0.88
SS18-205ENST00000542420 TMEM220Q6QAJ8 160 aa9.54□□□□□ -0.88
SS18-205ENST00000542420 ERN2Q76MJ5 926 aaKnown RBP9.54□□□□□ -0.88
SS18-205ENST00000542420 R3HCC1LQ7Z5L2 792 aaKnown RBP9.54□□□□□ -0.88
SS18-205ENST00000542420 GRASPQ7Z6J2 395 aaPredicted RBP9.54□□□□□ -0.88
SS18-205ENST00000542420 FAM110BQ8TC76 370 aa9.54□□□□□ -0.88
SS18-205ENST00000542420 CYB5D2Q8WUJ1 264 aa9.54□□□□□ -0.88
SS18-205ENST00000542420 HDAC2Q92769 488 aaKnown RBP9.54□□□□□ -0.88
SS18-205ENST00000542420 MAGED4Q96JG8 741 aa9.54□□□□□ -0.88
SS18-205ENST00000542420 APOLD1Q96LR9 279 aa9.54□□□□□ -0.88
SS18-205ENST00000542420 PKP4Q99569 1192 aa9.54□□□□□ -0.88
SS18-205ENST00000542420 LMAN2LQ9H0V9 348 aa9.54□□□□□ -0.88
SS18-205ENST00000542420 TRPV5Q9NQA5 729 aa9.54□□□□□ -0.88
SS18-205ENST00000542420 HPS4Q9NQG7 708 aa9.54□□□□□ -0.88
SS18-205ENST00000542420 ZNF282Q9UDV7 671 aaPredicted RBP9.54□□□□□ -0.88
SS18-205ENST00000542420 DYRK1BQ9Y463 629 aa9.54□□□□□ -0.88
SS18-205ENST00000542420 PCDHB11Q9Y5F2 797 aa9.54□□□□□ -0.88
SS18-205ENST00000542420 TMEM247A6NEH6 219 aa9.54□□□□□ -0.88
SS18-205ENST00000542420 C1QTNF3-AMACRE9PGA6 284 aa9.54□□□□□ -0.88
SS18-205ENST00000542420 BOLA2-SMG1P6H3BVE0 249 aa9.54□□□□□ -0.88
SS18-205ENST00000542420 PLOD2O00469 737 aa9.54□□□□□ -0.88
SS18-205ENST00000542420 RNASET2O00584 256 aaKnown RBP9.54□□□□□ -0.88
SS18-205ENST00000542420 SLC16A6O15403 523 aa9.54□□□□□ -0.88
SS18-205ENST00000542420 FKBP9O95302 570 aa9.54□□□□□ -0.88
SS18-205ENST00000542420 CPNE6O95741 557 aa9.54□□□□□ -0.88
SS18-205ENST00000542420 CST1P01037 141 aa9.54□□□□□ -0.88
SS18-205ENST00000542420 SEMG1P04279 462 aa9.54□□□□□ -0.88
SS18-205ENST00000542420 PIK3CBP42338 1070 aa9.54□□□□□ -0.88
SS18-205ENST00000542420 RAD23AP54725 363 aa9.54□□□□□ -0.88
SS18-205ENST00000542420 WNT3P56703 355 aa9.54□□□□□ -0.88
SS18-205ENST00000542420 GRSF1Q12849 480 aaKnown RBP eCLIP9.54□□□□□ -0.88
SS18-205ENST00000542420 ARHGAP19Q14CB8 494 aa9.54□□□□□ -0.88
SS18-205ENST00000542420 HIST2H2ACQ16777 129 aaPredicted RBP9.54□□□□□ -0.88
SS18-205ENST00000542420 UGT8Q16880 541 aa9.54□□□□□ -0.88
SS18-205ENST00000542420 HIST2H2AA3Q6FI13 130 aa9.54□□□□□ -0.88
SS18-205ENST00000542420 ADAMTSL4Q6UY14 1074 aa9.54□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms