RNA–Protein interactions for RNA: ENST00000540931.1

CLSTN3-210, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-210ENST00000540931 MANEAQ5SRI9 462 aa16.83■□□□□ 0.28
CLSTN3-210ENST00000540931 TLDC1Q6P9B6 456 aa16.83■□□□□ 0.28
CLSTN3-210ENST00000540931 PPP1R3BQ86XI6 285 aa16.83■□□□□ 0.28
CLSTN3-210ENST00000540931 FAM129CQ86XR2 697 aa16.83■□□□□ 0.28
CLSTN3-210ENST00000540931 RCBTB1Q8NDN9 531 aa16.83■□□□□ 0.28
CLSTN3-210ENST00000540931 PPP4R1Q8TF05 950 aa16.83■□□□□ 0.28
CLSTN3-210ENST00000540931 RERGQ96A58 199 aaPredicted RBP16.83■□□□□ 0.28
CLSTN3-210ENST00000540931 ZFYVE21Q9BQ24 234 aa16.83■□□□□ 0.28
CLSTN3-210ENST00000540931 ERVK-6Q9BXR3 956 aa16.83■□□□□ 0.28
CLSTN3-210ENST00000540931 THSD1Q9NS62 852 aa16.83■□□□□ 0.28
CLSTN3-210ENST00000540931 FGF21Q9NSA1 209 aa16.83■□□□□ 0.28
CLSTN3-210ENST00000540931 ZNF358Q9NW07 568 aa16.83■□□□□ 0.28
CLSTN3-210ENST00000540931 SLC39A1Q9NY26 324 aa16.83■□□□□ 0.28
CLSTN3-210ENST00000540931 ADGRE2Q9UHX3 823 aa16.83■□□□□ 0.28
CLSTN3-210ENST00000540931 PCDHGA7Q9Y5G6 932 aa16.83■□□□□ 0.28
CLSTN3-210ENST00000540931 KCNE1BA0A087WTH5 132 aa16.82■□□□□ 0.28
CLSTN3-210ENST00000540931 HMGB1P1B2RPK0 211 aaPredicted RBP16.82■□□□□ 0.28
CLSTN3-210ENST00000540931 TK2O00142 265 aa16.82■□□□□ 0.28
CLSTN3-210ENST00000540931 NVLO15381 856 aaKnown RBP16.82■□□□□ 0.28
CLSTN3-210ENST00000540931 TAPBPO15533 448 aa16.82■□□□□ 0.28
CLSTN3-210ENST00000540931 SNUPNO95149 360 aaKnown RBP16.82■□□□□ 0.28
CLSTN3-210ENST00000540931 MLYCDO95822 493 aa16.82■□□□□ 0.28
CLSTN3-210ENST00000540931 PROCP04070 461 aa16.82■□□□□ 0.28
CLSTN3-210ENST00000540931 FGF5P12034 268 aa16.82■□□□□ 0.28
CLSTN3-210ENST00000540931 CPA3P15088 417 aa16.82■□□□□ 0.28
CLSTN3-210ENST00000540931 IMPDH1P20839 514 aa16.82■□□□□ 0.28
CLSTN3-210ENST00000540931 SERPINB1P30740 379 aa16.82■□□□□ 0.28
CLSTN3-210ENST00000540931 CASP2P42575 452 aa16.82■□□□□ 0.28
CLSTN3-210ENST00000540931 HSPA7P48741 367 aa16.82■□□□□ 0.28
CLSTN3-210ENST00000540931 EMP3P54852 163 aa16.82■□□□□ 0.28
CLSTN3-210ENST00000540931 DNAJB13P59910 316 aa16.82■□□□□ 0.28
CLSTN3-210ENST00000540931 TUBB3Q13509 450 aa16.82■□□□□ 0.28
CLSTN3-210ENST00000540931 KIAA1614Q5VZ46 1190 aa16.82■□□□□ 0.28
CLSTN3-210ENST00000540931 LIPJQ5W064 366 aa16.82■□□□□ 0.28
CLSTN3-210ENST00000540931 ATG9BQ674R7 924 aa16.82■□□□□ 0.28
CLSTN3-210ENST00000540931 ZNF425Q6IV72 752 aa16.82■□□□□ 0.28
CLSTN3-210ENST00000540931 NIPAL1Q6NVV3 410 aa16.82■□□□□ 0.28
CLSTN3-210ENST00000540931 ZYG11AQ6WRX3 759 aa16.82■□□□□ 0.28
CLSTN3-210ENST00000540931 ADCK2Q7Z695 626 aa16.82■□□□□ 0.28
CLSTN3-210ENST00000540931 EXOC3L1Q86VI1 746 aa16.82■□□□□ 0.28
CLSTN3-210ENST00000540931 TMEM151AQ8N4L1 468 aa16.82■□□□□ 0.28
CLSTN3-210ENST00000540931 PTGR2Q8N8N7 351 aaPredicted RBP16.82■□□□□ 0.28
CLSTN3-210ENST00000540931 SNX31Q8N9S9 440 aa16.82■□□□□ 0.28
CLSTN3-210ENST00000540931 OR4K1Q8NGD4 311 aa16.82■□□□□ 0.28
CLSTN3-210ENST00000540931 PYCR2Q96C36 320 aa16.82■□□□□ 0.28
CLSTN3-210ENST00000540931 REPS1Q96D71 796 aa16.82■□□□□ 0.28
CLSTN3-210ENST00000540931 PTCD3Q96EY7 689 aaKnown RBP16.82■□□□□ 0.28
CLSTN3-210ENST00000540931 ZNF578Q96N58 590 aaPredicted RBP16.82■□□□□ 0.28
CLSTN3-210ENST00000540931 TMEM79Q9BSE2 394 aa16.82■□□□□ 0.28
CLSTN3-210ENST00000540931 FAM117AQ9C073 453 aa16.82■□□□□ 0.28
CLSTN3-210ENST00000540931 NT5DC2Q9H857 520 aa16.82■□□□□ 0.28
CLSTN3-210ENST00000540931 SIDT1Q9NXL6 827 aaKnown RBP16.82■□□□□ 0.28
CLSTN3-210ENST00000540931 KLK13Q9UKR3 277 aa16.82■□□□□ 0.28
CLSTN3-210ENST00000540931 LHX6Q9UPM6 363 aa16.82■□□□□ 0.28
CLSTN3-210ENST00000540931 ANKRD12Q6UB98 2062 aa16.81■□□□□ 0.28
CLSTN3-210ENST00000540931 PTPRBP23467 1997 aa16.81■□□□□ 0.28
CLSTN3-210ENST00000540931 TYROBPO43914 113 aa16.81■□□□□ 0.28
CLSTN3-210ENST00000540931 C1GALT1C1LP0DN25 315 aa16.81■□□□□ 0.28
CLSTN3-210ENST00000540931 PSMB5P28074 263 aa16.81■□□□□ 0.28
CLSTN3-210ENST00000540931 AHRP35869 848 aa16.81■□□□□ 0.28
CLSTN3-210ENST00000540931 SERPINB5P36952 375 aa16.81■□□□□ 0.28
CLSTN3-210ENST00000540931 HNF4AP41235 474 aa16.81■□□□□ 0.28
CLSTN3-210ENST00000540931 ARSFP54793 590 aa16.81■□□□□ 0.28
CLSTN3-210ENST00000540931 ITGA1P56199 1179 aa16.81■□□□□ 0.28
CLSTN3-210ENST00000540931 PPP1CAP62136 330 aa16.81■□□□□ 0.28
CLSTN3-210ENST00000540931 GABREP78334 506 aa16.81■□□□□ 0.28
CLSTN3-210ENST00000540931 FOXM1Q08050 763 aa16.81■□□□□ 0.28
CLSTN3-210ENST00000540931 FAM214AQ32MH5 1076 aa16.81■□□□□ 0.28
CLSTN3-210ENST00000540931 C3orf38Q5JPI3 329 aa16.81■□□□□ 0.28
CLSTN3-210ENST00000540931 NXPE4Q6UWF7 544 aa16.81■□□□□ 0.28
CLSTN3-210ENST00000540931 RNF44Q7L0R7 432 aa16.81■□□□□ 0.28
CLSTN3-210ENST00000540931 PAQR7Q86WK9 346 aa16.81■□□□□ 0.28
CLSTN3-210ENST00000540931 KIRREL3Q8IZU9 778 aa16.81■□□□□ 0.28
CLSTN3-210ENST00000540931 DNAJC22Q8N4W6 341 aa16.81■□□□□ 0.28
CLSTN3-210ENST00000540931 TCP10LQ8TDR4 215 aa16.81■□□□□ 0.28
CLSTN3-210ENST00000540931 ATP6V1E2Q96A05 226 aa16.81■□□□□ 0.28
CLSTN3-210ENST00000540931 PHF21BQ96EK2 531 aa16.81■□□□□ 0.28
CLSTN3-210ENST00000540931 L3HYPDHQ96EM0 354 aa16.81■□□□□ 0.28
CLSTN3-210ENST00000540931 WDR34Q96EX3 536 aa16.81■□□□□ 0.28
CLSTN3-210ENST00000540931 SLC46A1Q96NT5 459 aa16.81■□□□□ 0.28
CLSTN3-210ENST00000540931 OR6C1Q96RD1 312 aa16.81■□□□□ 0.28
CLSTN3-210ENST00000540931 TRMOQ9BU70 441 aa16.81■□□□□ 0.28
CLSTN3-210ENST00000540931 DRC3Q9H069 523 aa16.81■□□□□ 0.28
CLSTN3-210ENST00000540931 ABCF3Q9NUQ8 709 aa16.81■□□□□ 0.28
CLSTN3-210ENST00000540931 COPG2Q9UBF2 871 aa16.81■□□□□ 0.28
CLSTN3-210ENST00000540931 SRPK3Q9UPE1 567 aa16.81■□□□□ 0.28
CLSTN3-210ENST00000540931 SATB2Q9UPW6 733 aa16.81■□□□□ 0.28
CLSTN3-210ENST00000540931 TRBC2A0A5B9 178 aa16.8■□□□□ 0.28
CLSTN3-210ENST00000540931 KRT87PA6NCN2 255 aa16.8■□□□□ 0.28
CLSTN3-210ENST00000540931 URADA6NGE7 173 aa16.8■□□□□ 0.28
CLSTN3-210ENST00000540931 A8MT66 165 aa16.8■□□□□ 0.28
CLSTN3-210ENST00000540931 H7BY64 318 aa16.8■□□□□ 0.28
CLSTN3-210ENST00000540931 DYNC1I1O14576 645 aa16.8■□□□□ 0.28
CLSTN3-210ENST00000540931 OTCP00480 354 aa16.8■□□□□ 0.28
CLSTN3-210ENST00000540931 CAPNS1P04632 268 aa16.8■□□□□ 0.28
CLSTN3-210ENST00000540931 FGF3P11487 239 aaPredicted RBP16.8■□□□□ 0.28
CLSTN3-210ENST00000540931 SKP1P63208 163 aa16.8■□□□□ 0.28
CLSTN3-210ENST00000540931 IRF8Q02556 426 aa16.8■□□□□ 0.28
CLSTN3-210ENST00000540931 CAMK2BQ13554 666 aa16.8■□□□□ 0.28
CLSTN3-210ENST00000540931 GTF2H2Q13888 395 aa16.8■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms