RNA–Protein interactions for RNA: ENST00000526553.5

CD44-223, Transcript of CD44 molecule (Indian blood group), human

TSL 4

Gene CD44, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-223	ENST00000526553	C6orf163	Q5TEZ5	329 aa		4.02	□□□□□ -1.77
CD44-223	ENST00000526553	LCN1P1	Q5VSP4	162 aa		4.02	□□□□□ -1.77
CD44-223	ENST00000526553	SLC25A47	Q6Q0C1	308 aa		4.02	□□□□□ -1.77
CD44-223	ENST00000526553	TMEM207	Q6UWW9	146 aa		4.02	□□□□□ -1.77
CD44-223	ENST00000526553	DET1	Q7L5Y6	550 aa		4.02	□□□□□ -1.77
CD44-223	ENST00000526553	GTSCR1	Q86UQ5	136 aa		4.02	□□□□□ -1.77
CD44-223	ENST00000526553	NUP93	Q8N1F7	819 aa		4.02	□□□□□ -1.77
CD44-223	ENST00000526553	ZNF713	Q8N859	430 aa	Predicted RBP	4.02	□□□□□ -1.77
CD44-223	ENST00000526553	OR1L3	Q8NH93	324 aa		4.02	□□□□□ -1.77
CD44-223	ENST00000526553	THOC1	Q96FV9	657 aa	Known RBP	4.02	□□□□□ -1.77
CD44-223	ENST00000526553	LINC00615	Q96LM1	132 aa	Predicted RBP	4.02	□□□□□ -1.77
CD44-223	ENST00000526553	RMDN2	Q96LZ7	410 aa		4.02	□□□□□ -1.77
CD44-223	ENST00000526553	C10orf90	Q96M02	699 aa		4.02	□□□□□ -1.77
CD44-223	ENST00000526553	NSMCE3	Q96MG7	304 aa		4.02	□□□□□ -1.77
CD44-223	ENST00000526553	ATOH8	Q96SQ7	321 aa		4.02	□□□□□ -1.77
CD44-223	ENST00000526553	GPATCH1	Q9BRR8	931 aa	Known RBP	4.02	□□□□□ -1.77
CD44-223	ENST00000526553	CDK19	Q9BWU1	502 aa		4.02	□□□□□ -1.77
CD44-223	ENST00000526553	CNOT10	Q9H9A5	744 aa	Known RBP	4.02	□□□□□ -1.77
CD44-223	ENST00000526553	MAN2C1	Q9NTJ4	1040 aa		4.02	□□□□□ -1.77
CD44-223	ENST00000526553	MTRR	Q9UBK8	725 aa		4.02	□□□□□ -1.77
CD44-223	ENST00000526553	LEF1	Q9UJU2	399 aa	Predicted RBP	4.02	□□□□□ -1.77
CD44-223	ENST00000526553	CPSF3	Q9UKF6	684 aa	Known RBP	4.02	□□□□□ -1.77
CD44-223	ENST00000526553	POMT1	Q9Y6A1	747 aa		4.02	□□□□□ -1.77
CD44-223	ENST00000526553	MYH15	Q9Y2K3	1946 aa		4.01	□□□□□ -1.77
CD44-223	ENST00000526553	CECR2	Q9BXF3	1484 aa		4.01	□□□□□ -1.77
CD44-223	ENST00000526553	HTR3E	A5X5Y0	456 aa		4.01	□□□□□ -1.77
CD44-223	ENST00000526553	C15orf61	A6NNL5	157 aa		4.01	□□□□□ -1.77
CD44-223	ENST00000526553	ZNF195	O14628	629 aa		4.01	□□□□□ -1.77
CD44-223	ENST00000526553	EPHB6	O15197	1021 aa		4.01	□□□□□ -1.77
CD44-223	ENST00000526553	DDHD2	O94830	711 aa		4.01	□□□□□ -1.77
CD44-223	ENST00000526553	SLCO2B1	O94956	709 aa		4.01	□□□□□ -1.77
CD44-223	ENST00000526553	MOCS3	O95396	460 aa		4.01	□□□□□ -1.77
CD44-223	ENST00000526553	SEC24A	O95486	1093 aa		4.01	□□□□□ -1.77
CD44-223	ENST00000526553	CLDN1	O95832	211 aa		4.01	□□□□□ -1.77
CD44-223	ENST00000526553	GP1BB	P13224	206 aa		4.01	□□□□□ -1.77
CD44-223	ENST00000526553	IRF2	P14316	349 aa		4.01	□□□□□ -1.77
CD44-223	ENST00000526553	PSMA3	P25788	255 aa		4.01	□□□□□ -1.77
CD44-223	ENST00000526553	TLX1	P31314	330 aa	Predicted RBP	4.01	□□□□□ -1.77
CD44-223	ENST00000526553	LHX1	P48742	406 aa		4.01	□□□□□ -1.77
CD44-223	ENST00000526553	HUNK	P57058	714 aa		4.01	□□□□□ -1.77
CD44-223	ENST00000526553	GCNT1	Q02742	428 aa		4.01	□□□□□ -1.77
CD44-223	ENST00000526553	CUL3	Q13618	768 aa		4.01	□□□□□ -1.77
CD44-223	ENST00000526553	E2F5	Q15329	346 aa		4.01	□□□□□ -1.77
CD44-223	ENST00000526553	VWC2	Q2TAL6	325 aa		4.01	□□□□□ -1.77
CD44-223	ENST00000526553	MCMDC2	Q4G0Z9	681 aa		4.01	□□□□□ -1.77
CD44-223	ENST00000526553	C6orf136	Q5SQH8	315 aa		4.01	□□□□□ -1.77
CD44-223	ENST00000526553	WLS	Q5T9L3	541 aa		4.01	□□□□□ -1.77
CD44-223	ENST00000526553	UGT3A1	Q6NUS8	523 aa		4.01	□□□□□ -1.77
CD44-223	ENST00000526553	SHQ1	Q6PI26	577 aa	Known RBP	4.01	□□□□□ -1.77
CD44-223	ENST00000526553	TIGD4	Q8IY51	512 aa		4.01	□□□□□ -1.77
CD44-223	ENST00000526553	GPRC5A	Q8NFJ5	357 aa		4.01	□□□□□ -1.77
CD44-223	ENST00000526553	VANGL1	Q8TAA9	524 aa	Predicted RBP	4.01	□□□□□ -1.77
CD44-223	ENST00000526553	SMAP2	Q8WU79	429 aa	Predicted RBP	4.01	□□□□□ -1.77
CD44-223	ENST00000526553	GATAD1	Q8WUU5	269 aa		4.01	□□□□□ -1.77
CD44-223	ENST00000526553	ROBO4	Q8WZ75	1007 aa		4.01	□□□□□ -1.77
CD44-223	ENST00000526553	PIGB	Q92521	554 aa		4.01	□□□□□ -1.77
CD44-223	ENST00000526553	ARHGAP45	Q92619	1136 aa		4.01	□□□□□ -1.77
CD44-223	ENST00000526553	CCDC114	Q96M63	670 aa		4.01	□□□□□ -1.77
CD44-223	ENST00000526553	USP28	Q96RU2	1077 aa		4.01	□□□□□ -1.77
CD44-223	ENST00000526553	DESI2	Q9BSY9	194 aa		4.01	□□□□□ -1.77
CD44-223	ENST00000526553	MLPH	Q9BV36	600 aa	Predicted RBP	4.01	□□□□□ -1.77
CD44-223	ENST00000526553	FAM49A	Q9H0Q0	323 aa	Predicted RBP	4.01	□□□□□ -1.77
CD44-223	ENST00000526553		Q9H8V8	135 aa		4.01	□□□□□ -1.77
CD44-223	ENST00000526553	CHST11	Q9NPF2	352 aa		4.01	□□□□□ -1.77
CD44-223	ENST00000526553	PPP1R3C	Q9UQK1	317 aa		4.01	□□□□□ -1.77
CD44-223	ENST00000526553	PPP2R2C	Q9Y2T4	447 aa		4.01	□□□□□ -1.77
CD44-223	ENST00000526553	BICRA	Q9NZM4	1560 aa		4.01	□□□□□ -1.77
CD44-223	ENST00000526553	COL2A1	P02458	1487 aa	Predicted RBP	4	□□□□□ -1.77
CD44-223	ENST00000526553	CC2D2A	Q9P2K1	1620 aa		4	□□□□□ -1.77
CD44-223	ENST00000526553	IGKV3D-20	A0A0C4DH25	116 aa		4	□□□□□ -1.77
CD44-223	ENST00000526553	BICDL2	A1A5D9	508 aa		4	□□□□□ -1.77
CD44-223	ENST00000526553	IFIT3	O14879	490 aa	Known RBP	4	□□□□□ -1.77
CD44-223	ENST00000526553	SPRY1	O43609	319 aa	Predicted RBP	4	□□□□□ -1.77
CD44-223	ENST00000526553	CELF2	O95319	508 aa	Known RBP	4	□□□□□ -1.77
CD44-223	ENST00000526553	PENK	P01210	267 aa	Predicted RBP	4	□□□□□ -1.77
CD44-223	ENST00000526553	DARS	P14868	501 aa	Known RBP	4	□□□□□ -1.77
CD44-223	ENST00000526553	PTMS	P20962	102 aa		4	□□□□□ -1.77
CD44-223	ENST00000526553	CDC25C	P30307	473 aa		4	□□□□□ -1.77
CD44-223	ENST00000526553	NAGLU	P54802	743 aa		4	□□□□□ -1.77
CD44-223	ENST00000526553	GUCY2D	Q02846	1103 aa		4	□□□□□ -1.77
CD44-223	ENST00000526553	DRP2	Q13474	957 aa		4	□□□□□ -1.77
CD44-223	ENST00000526553	PTK6	Q13882	451 aa		4	□□□□□ -1.77
CD44-223	ENST00000526553	MORF4L2	Q15014	288 aa		4	□□□□□ -1.77
CD44-223	ENST00000526553	TYSND1	Q2T9J0	566 aa		4	□□□□□ -1.77
CD44-223	ENST00000526553	MPP7	Q5T2T1	576 aa		4	□□□□□ -1.77
CD44-223	ENST00000526553	MOXD1	Q6UVY6	613 aa		4	□□□□□ -1.77
CD44-223	ENST00000526553	C11orf57	Q6ZUT1	292 aa	Predicted RBP	4	□□□□□ -1.77
CD44-223	ENST00000526553	BTN2A1	Q7KYR7	527 aa		4	□□□□□ -1.77
CD44-223	ENST00000526553	SPATA19	Q7Z5L4	167 aa		4	□□□□□ -1.77
CD44-223	ENST00000526553	PTAR1	Q7Z6K3	402 aa	Predicted RBP	4	□□□□□ -1.77
CD44-223	ENST00000526553	NDUFAF2	Q8N183	169 aa		4	□□□□□ -1.77
CD44-223	ENST00000526553	GOLGA6L2	Q8N9W4	650 aa	Predicted RBP	4	□□□□□ -1.77
CD44-223	ENST00000526553	OR4K1	Q8NGD4	311 aa		4	□□□□□ -1.77
CD44-223	ENST00000526553	C9orf43	Q8TAL5	461 aa	Predicted RBP	4	□□□□□ -1.77
CD44-223	ENST00000526553	AGAP3	Q96P47	875 aa		4	□□□□□ -1.77
CD44-223	ENST00000526553	VGLL1	Q99990	258 aa		4	□□□□□ -1.77
CD44-223	ENST00000526553	CABLES2	Q9BTV7	478 aa		4	□□□□□ -1.77
CD44-223	ENST00000526553	WWTR1	Q9GZV5	400 aa		4	□□□□□ -1.77
CD44-223	ENST00000526553	TLE6	Q9H808	572 aa		4	□□□□□ -1.77
CD44-223	ENST00000526553	PAK5	Q9P286	719 aa		4	□□□□□ -1.77

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