RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 SCG2P13521 617 aa2.01□□□□□ -2.09
HMGB1-208ENST00000490788 MYOGP15173 224 aa2.01□□□□□ -2.09
HMGB1-208ENST00000490788 GJA1P17302 382 aa2.01□□□□□ -2.09
HMGB1-208ENST00000490788 PON1P27169 355 aa2.01□□□□□ -2.09
HMGB1-208ENST00000490788 ACADLP28330 430 aa2.01□□□□□ -2.09
HMGB1-208ENST00000490788 CASP2P42575 452 aa2.01□□□□□ -2.09
HMGB1-208ENST00000490788 MRPL12P52815 198 aaKnown RBP2.01□□□□□ -2.09
HMGB1-208ENST00000490788 CSE1LP55060 971 aaKnown RBP2.01□□□□□ -2.09
HMGB1-208ENST00000490788 RCN1Q15293 331 aa2.01□□□□□ -2.09
HMGB1-208ENST00000490788 TOMM20Q15388 145 aa2.01□□□□□ -2.09
HMGB1-208ENST00000490788 ASTE1Q2TB18 679 aaPredicted RBP2.01□□□□□ -2.09
HMGB1-208ENST00000490788 RABL6Q3YEC7 729 aaPredicted RBP2.01□□□□□ -2.09
HMGB1-208ENST00000490788 CFAP58Q5T655 872 aa2.01□□□□□ -2.09
HMGB1-208ENST00000490788 N4BP2L1Q5TBK1 243 aaPredicted RBP2.01□□□□□ -2.09
HMGB1-208ENST00000490788 ALS2CLQ60I27 953 aa2.01□□□□□ -2.09
HMGB1-208ENST00000490788 FAM180BQ6P0A1 224 aa2.01□□□□□ -2.09
HMGB1-208ENST00000490788 KLC3Q6P597 504 aa2.01□□□□□ -2.09
HMGB1-208ENST00000490788 ZNF790Q6PG37 636 aa2.01□□□□□ -2.09
HMGB1-208ENST00000490788 RBMS3Q6XE24 437 aaKnown RBP2.01□□□□□ -2.09
HMGB1-208ENST00000490788 Q75L30 129 aa2.01□□□□□ -2.09
HMGB1-208ENST00000490788 NANOGNBQ7Z5D8 188 aa2.01□□□□□ -2.09
HMGB1-208ENST00000490788 ARHGAP22Q7Z5H3 698 aa2.01□□□□□ -2.09
HMGB1-208ENST00000490788 KIAA1328Q86T90 577 aa2.01□□□□□ -2.09
HMGB1-208ENST00000490788 TRPT1Q86TN4 253 aaKnown RBP2.01□□□□□ -2.09
HMGB1-208ENST00000490788 LCA5Q86VQ0 697 aa2.01□□□□□ -2.09
HMGB1-208ENST00000490788 GALNT13Q8IUC8 556 aa2.01□□□□□ -2.09
HMGB1-208ENST00000490788 ERC1Q8IUD2 1116 aa2.01□□□□□ -2.09
HMGB1-208ENST00000490788 APOBEC3FQ8IUX4 373 aaKnown RBP2.01□□□□□ -2.09
HMGB1-208ENST00000490788 MCEMP1Q8IX19 187 aa2.01□□□□□ -2.09
HMGB1-208ENST00000490788 GPALPP1Q8IXQ4 340 aa2.01□□□□□ -2.09
HMGB1-208ENST00000490788 PEX5LQ8IYB4 626 aa2.01□□□□□ -2.09
HMGB1-208ENST00000490788 ADGRF2Q8IZF7 708 aa2.01□□□□□ -2.09
HMGB1-208ENST00000490788 NDUFAF2Q8N183 169 aa2.01□□□□□ -2.09
HMGB1-208ENST00000490788 TTC39CQ8N584 583 aa2.01□□□□□ -2.09
HMGB1-208ENST00000490788 WDTC1Q8N5D0 677 aa2.01□□□□□ -2.09
HMGB1-208ENST00000490788 TMEM105Q8N8V8 129 aa2.01□□□□□ -2.09
HMGB1-208ENST00000490788 PPFIBP2Q8ND30 876 aa2.01□□□□□ -2.09
HMGB1-208ENST00000490788 MCUQ8NE86 351 aa2.01□□□□□ -2.09
HMGB1-208ENST00000490788 ERMNQ8TAM6 284 aa2.01□□□□□ -2.09
HMGB1-208ENST00000490788 FAM76AQ8TAV0 307 aa2.01□□□□□ -2.09
HMGB1-208ENST00000490788 GIMAP1Q8WWP7 306 aa2.01□□□□□ -2.09
HMGB1-208ENST00000490788 SKA1Q96BD8 255 aa2.01□□□□□ -2.09
HMGB1-208ENST00000490788 ZNF501Q96CX3 271 aaPredicted RBP2.01□□□□□ -2.09
HMGB1-208ENST00000490788 ERLEC1Q96DZ1 483 aa2.01□□□□□ -2.09
HMGB1-208ENST00000490788 C17orf77Q96MU5 243 aa2.01□□□□□ -2.09
HMGB1-208ENST00000490788 PARK7Q99497 189 aaKnown RBP2.01□□□□□ -2.09
HMGB1-208ENST00000490788 SH3GL1Q99961 368 aa2.01□□□□□ -2.09
HMGB1-208ENST00000490788 RHNO1Q9BSD3 238 aa2.01□□□□□ -2.09
HMGB1-208ENST00000490788 TCHPQ9BT92 498 aa2.01□□□□□ -2.09
HMGB1-208ENST00000490788 HGH1Q9BTY7 390 aa2.01□□□□□ -2.09
HMGB1-208ENST00000490788 ITPAQ9BY32 194 aa2.01□□□□□ -2.09
HMGB1-208ENST00000490788 PARD6BQ9BYG5 372 aa2.01□□□□□ -2.09
HMGB1-208ENST00000490788 HRH4Q9H3N8 390 aa2.01□□□□□ -2.09
HMGB1-208ENST00000490788 ZNF696Q9H7X3 374 aa2.01□□□□□ -2.09
HMGB1-208ENST00000490788 ZCCHC17Q9NP64 241 aaKnown RBP2.01□□□□□ -2.09
HMGB1-208ENST00000490788 SLC52A3Q9NQ40 469 aa2.01□□□□□ -2.09
HMGB1-208ENST00000490788 HOMER3Q9NSC5 361 aa2.01□□□□□ -2.09
HMGB1-208ENST00000490788 ADPRHL2Q9NX46 363 aa2.01□□□□□ -2.09
HMGB1-208ENST00000490788 DCAF16Q9NXF7 216 aa2.01□□□□□ -2.09
HMGB1-208ENST00000490788 ZNF624Q9P2J8 865 aaPredicted RBP2.01□□□□□ -2.09
HMGB1-208ENST00000490788 FRMD4AQ9P2Q2 1039 aaPredicted RBP2.01□□□□□ -2.09
HMGB1-208ENST00000490788 FBXL17Q9UF56 701 aa2.01□□□□□ -2.09
HMGB1-208ENST00000490788 AMACRQ9UHK6 382 aa2.01□□□□□ -2.09
HMGB1-208ENST00000490788 CFAP45Q9UL16 551 aa2.01□□□□□ -2.09
HMGB1-208ENST00000490788 ODF2LQ9ULJ1 636 aa2.01□□□□□ -2.09
HMGB1-208ENST00000490788 SLC7A7Q9UM01 511 aa2.01□□□□□ -2.09
HMGB1-208ENST00000490788 EXOC6BQ9Y2D4 811 aa2.01□□□□□ -2.09
HMGB1-208ENST00000490788 KCNK7Q9Y2U2 307 aa2.01□□□□□ -2.09
HMGB1-208ENST00000490788 ATP6V0A2Q9Y487 856 aa2.01□□□□□ -2.09
HMGB1-208ENST00000490788 PCDHGA5Q9Y5G8 931 aa2.01□□□□□ -2.09
HMGB1-208ENST00000490788 R4GN57 208 aa2.01□□□□□ -2.09
HMGB1-208ENST00000490788 MYO9AB2RTY4 2548 aa2.01□□□□□ -2.09
HMGB1-208ENST00000490788 GVINP1Q7Z2Y8 2422 aa2.01□□□□□ -2.09
HMGB1-208ENST00000490788 HECTD1Q9ULT8 2610 aa2.01□□□□□ -2.09
HMGB1-208ENST00000490788 KTN1Q86UP2 1357 aaKnown RBP2□□□□□ -2.09
HMGB1-208ENST00000490788 IBTKQ9P2D0 1353 aaPredicted RBP2□□□□□ -2.09
HMGB1-208ENST00000490788 ZNF831Q5JPB2 1677 aa2□□□□□ -2.09
HMGB1-208ENST00000490788 ITPR3Q14573 2671 aa2□□□□□ -2.09
HMGB1-208ENST00000490788 EVC2Q86UK5 1308 aa2□□□□□ -2.09
HMGB1-208ENST00000490788 A0A0B4J203 849 aa2□□□□□ -2.09
HMGB1-208ENST00000490788 ELOVL7A1L3X0 281 aa2□□□□□ -2.09
HMGB1-208ENST00000490788 OR2M5A3KFT3 312 aa2□□□□□ -2.09
HMGB1-208ENST00000490788 GOLGA6L10A6NI86 522 aa2□□□□□ -2.09
HMGB1-208ENST00000490788 A6NL46 340 aa2□□□□□ -2.09
HMGB1-208ENST00000490788 OR6C76A6NM76 312 aa2□□□□□ -2.09
HMGB1-208ENST00000490788 USO1O60763 962 aaKnown RBP2□□□□□ -2.09
HMGB1-208ENST00000490788 TSPAN9O75954 239 aa2□□□□□ -2.09
HMGB1-208ENST00000490788 RSL1D1O76021 490 aaKnown RBP2□□□□□ -2.09
HMGB1-208ENST00000490788 KIAA0754O94854 1291 aa2□□□□□ -2.09
HMGB1-208ENST00000490788 ERLIN2O94905 339 aa2□□□□□ -2.09
HMGB1-208ENST00000490788 LDLRP01130 860 aa2□□□□□ -2.09
HMGB1-208ENST00000490788 CA3P07451 260 aa2□□□□□ -2.09
HMGB1-208ENST00000490788 CCDC159P0C7I6 412 aa2□□□□□ -2.09
HMGB1-208ENST00000490788 CFC1BP0CG36 223 aa2□□□□□ -2.09
HMGB1-208ENST00000490788 CFC1P0CG37 223 aa2□□□□□ -2.09
HMGB1-208ENST00000490788 CYP2B6P20813 491 aa2□□□□□ -2.09
HMGB1-208ENST00000490788 NMBRP28336 390 aa2□□□□□ -2.09
HMGB1-208ENST00000490788 ALDH4A1P30038 563 aa2□□□□□ -2.09
HMGB1-208ENST00000490788 PRKAR2BP31323 418 aa2□□□□□ -2.09
HMGB1-208ENST00000490788 ACTN2P35609 894 aa2□□□□□ -2.09
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms