RNA–Protein interactions for RNA: ENST00000448428.1

PRPF40A-203, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 5

Gene PRPF40A, Length 490 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-203ENST00000448428 HKDC1Q2TB90 917 aa12.16□□□□□ -0.46
PRPF40A-203ENST00000448428 PRAMEF13Q5VWM6 474 aa12.16□□□□□ -0.46
PRPF40A-203ENST00000448428 CPZQ66K79 652 aa12.16□□□□□ -0.46
PRPF40A-203ENST00000448428 SBSNQ6UWP8 590 aa12.16□□□□□ -0.46
PRPF40A-203ENST00000448428 COX15Q7KZN9 410 aa12.16□□□□□ -0.46
PRPF40A-203ENST00000448428 ADCK2Q7Z695 626 aa12.16□□□□□ -0.46
PRPF40A-203ENST00000448428 PTRH1Q86Y79 214 aaKnown RBP12.16□□□□□ -0.46
PRPF40A-203ENST00000448428 MMGT1Q8N4V1 131 aa12.16□□□□□ -0.46
PRPF40A-203ENST00000448428 NKAPQ8N5F7 415 aaKnown RBP12.16□□□□□ -0.46
PRPF40A-203ENST00000448428 OR2Y1Q8NGV0 311 aa12.16□□□□□ -0.46
PRPF40A-203ENST00000448428 ANKRD49Q8WVL7 239 aa12.16□□□□□ -0.46
PRPF40A-203ENST00000448428 CDKL2Q92772 493 aa12.16□□□□□ -0.46
PRPF40A-203ENST00000448428 CPNE1Q99829 537 aa12.16□□□□□ -0.46
PRPF40A-203ENST00000448428 SGPP1Q9BX95 441 aa12.16□□□□□ -0.46
PRPF40A-203ENST00000448428 ING2Q9H160 280 aa12.16□□□□□ -0.46
PRPF40A-203ENST00000448428 ZDHHC18Q9NUE0 388 aa12.16□□□□□ -0.46
PRPF40A-203ENST00000448428 RUVBL1Q9Y265 456 aaKnown RBP12.16□□□□□ -0.46
PRPF40A-203ENST00000448428 MAU2Q9Y6X3 613 aa12.16□□□□□ -0.46
PRPF40A-203ENST00000448428 MKRN2OSH3BPM6 223 aa12.15□□□□□ -0.46
PRPF40A-203ENST00000448428 CDC7O00311 574 aa12.15□□□□□ -0.46
PRPF40A-203ENST00000448428 WISP3O95389 354 aaPredicted RBP12.15□□□□□ -0.46
PRPF40A-203ENST00000448428 GUCA1CO95843 209 aa12.15□□□□□ -0.46
PRPF40A-203ENST00000448428 ALBP02768 609 aa12.15□□□□□ -0.46
PRPF40A-203ENST00000448428 TUBB4AP04350 444 aa12.15□□□□□ -0.46
PRPF40A-203ENST00000448428 UMODP07911 640 aa12.15□□□□□ -0.46
PRPF40A-203ENST00000448428 ENO2P09104 434 aaPredicted RBP12.15□□□□□ -0.46
PRPF40A-203ENST00000448428 NR1D1P20393 614 aa12.15□□□□□ -0.46
PRPF40A-203ENST00000448428 HRH2P25021 359 aa12.15□□□□□ -0.46
PRPF40A-203ENST00000448428 EMP3P54852 163 aa12.15□□□□□ -0.46
PRPF40A-203ENST00000448428 AP1S2P56377 157 aa12.15□□□□□ -0.46
PRPF40A-203ENST00000448428 CSNK1G2P78368 415 aa12.15□□□□□ -0.46
PRPF40A-203ENST00000448428 POU4F1Q01851 419 aa12.15□□□□□ -0.46
PRPF40A-203ENST00000448428 ILF2Q12905 390 aaKnown RBP12.15□□□□□ -0.46
PRPF40A-203ENST00000448428 ATP1A4Q13733 1029 aa12.15□□□□□ -0.46
PRPF40A-203ENST00000448428 NKG7Q16617 165 aa12.15□□□□□ -0.46
PRPF40A-203ENST00000448428 MUM1Q2TAK8 710 aa12.15□□□□□ -0.46
PRPF40A-203ENST00000448428 KBTBD12Q3ZCT8 623 aa12.15□□□□□ -0.46
PRPF40A-203ENST00000448428 LCTLQ6UWM7 567 aa12.15□□□□□ -0.46
PRPF40A-203ENST00000448428 RAB43Q86YS6 212 aa12.15□□□□□ -0.46
PRPF40A-203ENST00000448428 CSNK1A1LQ8N752 337 aa12.15□□□□□ -0.46
PRPF40A-203ENST00000448428 NOA1Q8NC60 698 aaKnown RBP12.15□□□□□ -0.46
PRPF40A-203ENST00000448428 OR56A3Q8NH54 315 aa12.15□□□□□ -0.46
PRPF40A-203ENST00000448428 ANKRD7Q92527 254 aa12.15□□□□□ -0.46
PRPF40A-203ENST00000448428 RERGQ96A58 199 aaPredicted RBP12.15□□□□□ -0.46
PRPF40A-203ENST00000448428 FKBP10Q96AY3 582 aa12.15□□□□□ -0.46
PRPF40A-203ENST00000448428 PYCR2Q96C36 320 aa12.15□□□□□ -0.46
PRPF40A-203ENST00000448428 FBXL8Q96CD0 374 aa12.15□□□□□ -0.46
PRPF40A-203ENST00000448428 CABS1Q96KC9 395 aa12.15□□□□□ -0.46
PRPF40A-203ENST00000448428 C10orf90Q96M02 699 aa12.15□□□□□ -0.46
PRPF40A-203ENST00000448428 RBBP8Q99708 897 aa12.15□□□□□ -0.46
PRPF40A-203ENST00000448428 CAB39LQ9H9S4 337 aa12.15□□□□□ -0.46
PRPF40A-203ENST00000448428 ZNF304Q9HCX3 659 aa12.15□□□□□ -0.46
PRPF40A-203ENST00000448428 ACSS2Q9NR19 701 aa12.15□□□□□ -0.46
PRPF40A-203ENST00000448428 TXNDC16Q9P2K2 825 aa12.15□□□□□ -0.46
PRPF40A-203ENST00000448428 DMGDHQ9UI17 866 aaKnown RBP12.15□□□□□ -0.46
PRPF40A-203ENST00000448428 NOVA2Q9UNW9 492 aaKnown RBP12.15□□□□□ -0.46
PRPF40A-203ENST00000448428 TP53TG5Q9Y2B4 290 aa12.15□□□□□ -0.46
PRPF40A-203ENST00000448428 SMG1Q96Q15 3661 aaKnown RBP12.15□□□□□ -0.47
PRPF40A-203ENST00000448428 SCN3AQ9NY46 2000 aa12.15□□□□□ -0.47
PRPF40A-203ENST00000448428 NUP210LQ5VU65 1888 aa12.14□□□□□ -0.47
PRPF40A-203ENST00000448428 KCNE1BA0A087WTH5 132 aa12.14□□□□□ -0.47
PRPF40A-203ENST00000448428 PABPN1LA6NDY0 278 aaKnown RBP12.14□□□□□ -0.47
PRPF40A-203ENST00000448428 NPEPPSL1A6NEC2 478 aa12.14□□□□□ -0.47
PRPF40A-203ENST00000448428 P2RX6O15547 441 aa12.14□□□□□ -0.47
PRPF40A-203ENST00000448428 SUV39H1O43463 412 aa12.14□□□□□ -0.47
PRPF40A-203ENST00000448428 SLC28A2O43868 658 aa12.14□□□□□ -0.47
PRPF40A-203ENST00000448428 FAM155BO75949 473 aa12.14□□□□□ -0.47
PRPF40A-203ENST00000448428 STATHP02808 62 aa12.14□□□□□ -0.47
PRPF40A-203ENST00000448428 PDGFAP04085 211 aa12.14□□□□□ -0.47
PRPF40A-203ENST00000448428 CCND1P24385 295 aa12.14□□□□□ -0.47
PRPF40A-203ENST00000448428 GP5P40197 560 aa12.14□□□□□ -0.47
PRPF40A-203ENST00000448428 SLC12A2P55011 1212 aa12.14□□□□□ -0.47
PRPF40A-203ENST00000448428 USP10Q14694 798 aaKnown RBP12.14□□□□□ -0.47
PRPF40A-203ENST00000448428 PPP1R3AQ16821 1122 aa12.14□□□□□ -0.47
PRPF40A-203ENST00000448428 LACTB2Q53H82 288 aaPredicted RBP12.14□□□□□ -0.47
PRPF40A-203ENST00000448428 CAPN13Q6MZZ7 669 aaPredicted RBP12.14□□□□□ -0.47
PRPF40A-203ENST00000448428 TCTN3Q6NUS6 607 aa12.14□□□□□ -0.47
PRPF40A-203ENST00000448428 PRMT9Q6P2P2 845 aa12.14□□□□□ -0.47
PRPF40A-203ENST00000448428 SHISA6Q6ZSJ9 500 aa12.14□□□□□ -0.47
PRPF40A-203ENST00000448428 MED25Q71SY5 747 aa12.14□□□□□ -0.47
PRPF40A-203ENST00000448428 PRICKLE2Q7Z3G6 844 aa12.14□□□□□ -0.47
PRPF40A-203ENST00000448428 PPP1R32Q7Z5V6 425 aa12.14□□□□□ -0.47
PRPF40A-203ENST00000448428 MRGPREQ86SM8 312 aa12.14□□□□□ -0.47
PRPF40A-203ENST00000448428 C17orf64Q86WR6 236 aa12.14□□□□□ -0.47
PRPF40A-203ENST00000448428 CTAGE3PQ8IX95 158 aa12.14□□□□□ -0.47
PRPF40A-203ENST00000448428 ARHGEF39Q8N4T4 335 aa12.14□□□□□ -0.47
PRPF40A-203ENST00000448428 PPM1NQ8N819 430 aa12.14□□□□□ -0.47
PRPF40A-203ENST00000448428 TMEM102Q8N9M5 508 aaPredicted RBP12.14□□□□□ -0.47
PRPF40A-203ENST00000448428 FBF1Q8TES7 1133 aa12.14□□□□□ -0.47
PRPF40A-203ENST00000448428 COL26A1Q96A83 441 aa12.14□□□□□ -0.47
PRPF40A-203ENST00000448428 IP6K3Q96PC2 410 aa12.14□□□□□ -0.47
PRPF40A-203ENST00000448428 OR4K3Q96R72 315 aa12.14□□□□□ -0.47
PRPF40A-203ENST00000448428 SPSB2Q99619 263 aa12.14□□□□□ -0.47
PRPF40A-203ENST00000448428 GPR22Q99680 433 aa12.14□□□□□ -0.47
PRPF40A-203ENST00000448428 HAUS8Q9BT25 410 aa12.14□□□□□ -0.47
PRPF40A-203ENST00000448428 SLC26A1Q9H2B4 701 aa12.14□□□□□ -0.47
PRPF40A-203ENST00000448428 WDR54Q9H977 334 aa12.14□□□□□ -0.47
PRPF40A-203ENST00000448428 POPDC3Q9HBV1 291 aa12.14□□□□□ -0.47
PRPF40A-203ENST00000448428 GPAMQ9HCL2 828 aa12.14□□□□□ -0.47
PRPF40A-203ENST00000448428 CTSFQ9UBX1 484 aa12.14□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms