RNA–Protein interactions for RNA: ENST00000447182.6

SDCBP-204, Transcript of syndecan binding protein, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SDCBP, Length 2,103 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-204ENST00000447182 UBE2R2Q712K3 238 aaPredicted RBP18.5■□□□□ 0.55
SDCBP-204ENST00000447182 DSG4Q86SJ6 1040 aa18.5■□□□□ 0.55
SDCBP-204ENST00000447182 SLC22A15Q8IZD6 547 aa18.5■□□□□ 0.55
SDCBP-204ENST00000447182 OR8J2Q8NGG1 315 aa18.5■□□□□ 0.55
SDCBP-204ENST00000447182 OR6K2Q8NGY2 324 aa18.5■□□□□ 0.55
SDCBP-204ENST00000447182 UBE2FQ969M7 185 aa18.5■□□□□ 0.55
SDCBP-204ENST00000447182 C7orf34Q96L11 122 aa18.5■□□□□ 0.55
SDCBP-204ENST00000447182 MAGEB10Q96LZ2 347 aaPredicted RBP18.5■□□□□ 0.55
SDCBP-204ENST00000447182 FRG2BQ96QU4 278 aa18.5■□□□□ 0.55
SDCBP-204ENST00000447182 MYOCQ99972 504 aa18.5■□□□□ 0.55
SDCBP-204ENST00000447182 SPATA9Q9BWV2 254 aa18.5■□□□□ 0.55
SDCBP-204ENST00000447182 PLCXD1Q9NUJ7 323 aa18.5■□□□□ 0.55
SDCBP-204ENST00000447182 FAM120CQ9NX05 1096 aaKnown RBP18.5■□□□□ 0.55
SDCBP-204ENST00000447182 ZDHHC3Q9NYG2 299 aa18.5■□□□□ 0.55
SDCBP-204ENST00000447182 PCDHGA6Q9Y5G7 932 aa18.5■□□□□ 0.55
SDCBP-204ENST00000447182 NUP214P35658 2090 aaPredicted RBP18.49■□□□□ 0.55
SDCBP-204ENST00000447182 SAGE2PA6NJ88 616 aa18.49■□□□□ 0.55
SDCBP-204ENST00000447182 AOAHP28039 575 aa18.49■□□□□ 0.55
SDCBP-204ENST00000447182 CCR7P32248 378 aa18.49■□□□□ 0.55
SDCBP-204ENST00000447182 C21orf58P58505 322 aa18.49■□□□□ 0.55
SDCBP-204ENST00000447182 TBCEQ15813 527 aaPredicted RBP18.49■□□□□ 0.55
SDCBP-204ENST00000447182 ZNF404Q494X3 552 aa18.49■□□□□ 0.55
SDCBP-204ENST00000447182 CST9Q5W186 159 aa18.49■□□□□ 0.55
SDCBP-204ENST00000447182 GALNT10Q86SR1 603 aa18.49■□□□□ 0.55
SDCBP-204ENST00000447182 SYNPOQ8N3V7 929 aa18.49■□□□□ 0.55
SDCBP-204ENST00000447182 HJURPQ8NCD3 748 aaPredicted RBP18.49■□□□□ 0.55
SDCBP-204ENST00000447182 DNASE1L2Q92874 299 aa18.49■□□□□ 0.55
SDCBP-204ENST00000447182 HCSTQ9UBK5 93 aa18.49■□□□□ 0.55
SDCBP-204ENST00000447182 PCDHB7Q9Y5E2 793 aa18.49■□□□□ 0.55
SDCBP-204ENST00000447182 NT5C1B-RDH14C9J2C7 533 aa18.49■□□□□ 0.55
SDCBP-204ENST00000447182 NBNO60934 754 aa18.49■□□□□ 0.55
SDCBP-204ENST00000447182 BMP1P13497 986 aa18.49■□□□□ 0.55
SDCBP-204ENST00000447182 CCND3P30281 292 aaPredicted RBP18.49■□□□□ 0.55
SDCBP-204ENST00000447182 LIPAP38571 399 aa18.49■□□□□ 0.55
SDCBP-204ENST00000447182 PXNP49023 591 aaPredicted RBP18.49■□□□□ 0.55
SDCBP-204ENST00000447182 GATMP50440 423 aa18.49■□□□□ 0.55
SDCBP-204ENST00000447182 ZNF33BQ06732 778 aa18.49■□□□□ 0.55
SDCBP-204ENST00000447182 ELP6Q0PNE2 266 aa18.49■□□□□ 0.55
SDCBP-204ENST00000447182 ZNF181Q2M3W8 571 aa18.49■□□□□ 0.55
SDCBP-204ENST00000447182 TMEM173Q86WV6 379 aaPredicted RBP18.49■□□□□ 0.55
SDCBP-204ENST00000447182 LYSMD1Q96S90 227 aa18.49■□□□□ 0.55
SDCBP-204ENST00000447182 ERVK-11Q9UQG0 969 aa18.49■□□□□ 0.55
SDCBP-204ENST00000447182 PABPN1LA6NDY0 278 aaKnown RBP18.48■□□□□ 0.55
SDCBP-204ENST00000447182 METTL15A6NJ78 407 aa18.48■□□□□ 0.55
SDCBP-204ENST00000447182 GFRA2O00451 464 aa18.48■□□□□ 0.55
SDCBP-204ENST00000447182 SMAD6O43541 496 aaKnown RBP18.48■□□□□ 0.55
SDCBP-204ENST00000447182 GALTP07902 379 aa18.48■□□□□ 0.55
SDCBP-204ENST00000447182 TGFBR1P36897 503 aa18.48■□□□□ 0.55
SDCBP-204ENST00000447182 CLK1P49759 484 aaKnown RBP18.48■□□□□ 0.55
SDCBP-204ENST00000447182 ZNF157P51786 506 aaPredicted RBP18.48■□□□□ 0.55
SDCBP-204ENST00000447182 CRHR2Q13324 411 aa18.48■□□□□ 0.55
SDCBP-204ENST00000447182 PTCHD3Q3KNS1 767 aa18.48■□□□□ 0.55
SDCBP-204ENST00000447182 RETSATQ6NUM9 610 aa18.48■□□□□ 0.55
SDCBP-204ENST00000447182 ZNF621Q6ZSS3 439 aa18.48■□□□□ 0.55
SDCBP-204ENST00000447182 SYT12Q8IV01 421 aa18.48■□□□□ 0.55
SDCBP-204ENST00000447182 LYSMD2Q8IV50 215 aa18.48■□□□□ 0.55
SDCBP-204ENST00000447182 GPR26Q8NDV2 337 aa18.48■□□□□ 0.55
SDCBP-204ENST00000447182 PSMA8Q8TAA3 256 aa18.48■□□□□ 0.55
SDCBP-204ENST00000447182 WFDC5Q8TCV5 224 aa18.48■□□□□ 0.55
SDCBP-204ENST00000447182 ASB11Q8WXH4 323 aa18.48■□□□□ 0.55
SDCBP-204ENST00000447182 COPS4Q9BT78 406 aa18.48■□□□□ 0.55
SDCBP-204ENST00000447182 CEP44Q9C0F1 390 aa18.48■□□□□ 0.55
SDCBP-204ENST00000447182 SACM1LQ9NTJ5 587 aa18.48■□□□□ 0.55
SDCBP-204ENST00000447182 RNF6Q9Y252 685 aa18.48■□□□□ 0.55
SDCBP-204ENST00000447182 PLXNB3Q9ULL4 1909 aa18.48■□□□□ 0.55
SDCBP-204ENST00000447182 C2orf78A6NCI8 922 aa18.47■□□□□ 0.55
SDCBP-204ENST00000447182 ZBBXA8MT70 800 aa18.47■□□□□ 0.55
SDCBP-204ENST00000447182 AIREO43918 545 aa18.47■□□□□ 0.55
SDCBP-204ENST00000447182 NUAK1O60285 661 aa18.47■□□□□ 0.55
SDCBP-204ENST00000447182 PRAMEF4O60810 478 aa18.47■□□□□ 0.55
SDCBP-204ENST00000447182 MYO1DO94832 1006 aa18.47■□□□□ 0.55
SDCBP-204ENST00000447182 HIST1H2AGP0C0S8 130 aaPredicted RBP18.47■□□□□ 0.55
SDCBP-204ENST00000447182 HIST1H2ADP20671 130 aa18.47■□□□□ 0.55
SDCBP-204ENST00000447182 SERPINB1P30740 379 aa18.47■□□□□ 0.55
SDCBP-204ENST00000447182 FLT3LGP49771 235 aa18.47■□□□□ 0.55
SDCBP-204ENST00000447182 PRAMEF9Q5VWM5 478 aa18.47■□□□□ 0.55
SDCBP-204ENST00000447182 CYP2U1Q7Z449 544 aa18.47■□□□□ 0.55
SDCBP-204ENST00000447182 P3H2Q8IVL5 708 aa18.47■□□□□ 0.55
SDCBP-204ENST00000447182 UPF1Q92900 1129 aaKnown RBP eCLIP18.47■□□□□ 0.55
SDCBP-204ENST00000447182 HIST1H2AHQ96KK5 128 aa18.47■□□□□ 0.55
SDCBP-204ENST00000447182 HIST1H2AJQ99878 128 aa18.47■□□□□ 0.55
SDCBP-204ENST00000447182 H2AFJQ9BTM1 129 aa18.47■□□□□ 0.55
SDCBP-204ENST00000447182 C2orf49Q9BVC5 232 aaPredicted RBP18.47■□□□□ 0.55
SDCBP-204ENST00000447182 NXF2Q9GZY0 626 aaKnown RBP18.47■□□□□ 0.55
SDCBP-204ENST00000447182 KLHL25Q9H0H3 589 aa18.47■□□□□ 0.55
SDCBP-204ENST00000447182 POLE4Q9NR33 117 aa18.47■□□□□ 0.55
SDCBP-204ENST00000447182 FKBP14Q9NWM8 211 aa18.47■□□□□ 0.55
SDCBP-204ENST00000447182 PSORS1C1Q9UIG5 152 aa18.47■□□□□ 0.55
SDCBP-204ENST00000447182 PNMA8BQ9ULN7 279 aaPredicted RBP18.47■□□□□ 0.55
SDCBP-204ENST00000447182 PCDHB11Q9Y5F2 797 aa18.47■□□□□ 0.55
SDCBP-204ENST00000447182 PCDHGB3Q9Y5G1 929 aa18.47■□□□□ 0.55
SDCBP-204ENST00000447182 IGLV3-16A0A075B6K0 115 aa18.47■□□□□ 0.55
SDCBP-204ENST00000447182 AGAP5A6NIR3 686 aa18.47■□□□□ 0.55
SDCBP-204ENST00000447182 M0R082 166 aa18.47■□□□□ 0.55
SDCBP-204ENST00000447182 PARNO95453 639 aaKnown RBP18.47■□□□□ 0.55
SDCBP-204ENST00000447182 EIF2S1P05198 315 aaKnown RBP18.47■□□□□ 0.55
SDCBP-204ENST00000447182 JUPP14923 745 aa18.47■□□□□ 0.55
SDCBP-204ENST00000447182 KCNJ10P78508 379 aa18.47■□□□□ 0.55
SDCBP-204ENST00000447182 B4GALNT1Q00973 533 aa18.47■□□□□ 0.55
SDCBP-204ENST00000447182 CSTF3Q12996 717 aaKnown RBP18.47■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 57 ms