RNA–Protein interactions for RNA: ENST00000439453.5

HPS4-206, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 1 (best)

Gene HPS4, Length 3,936 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-206ENST00000439453 ARTNQ5T4W7 220 aa8.32□□□□□ -1.08
HPS4-206ENST00000439453 C14orf80Q86SX3 495 aa8.32□□□□□ -1.08
HPS4-206ENST00000439453 PHF6Q8IWS0 365 aaKnown RBP eCLIP8.32□□□□□ -1.08
HPS4-206ENST00000439453 PAF1Q8N7H5 531 aa8.32□□□□□ -1.08
HPS4-206ENST00000439453 RTL3Q8N8U3 475 aaKnown RBP8.32□□□□□ -1.08
HPS4-206ENST00000439453 SUN5Q8TC36 379 aa8.32□□□□□ -1.08
HPS4-206ENST00000439453 METTL6Q8TCB7 284 aa8.32□□□□□ -1.08
HPS4-206ENST00000439453 MYOCQ99972 504 aa8.32□□□□□ -1.08
HPS4-206ENST00000439453 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP8.32□□□□□ -1.08
HPS4-206ENST00000439453 CRNNQ9UBG3 495 aaPredicted RBP8.32□□□□□ -1.08
HPS4-206ENST00000439453 UXTQ9UBK9 157 aaPredicted RBP8.32□□□□□ -1.08
HPS4-206ENST00000439453 GPSM3Q9Y4H4 160 aa8.32□□□□□ -1.08
HPS4-206ENST00000439453 USP34Q70CQ2 3546 aa8.32□□□□□ -1.08
HPS4-206ENST00000439453 LOC100506127A0A0U1RQW1 187 aa8.32□□□□□ -1.08
HPS4-206ENST00000439453 PNMA8CA0A1B0GUJ8 204 aa8.32□□□□□ -1.08
HPS4-206ENST00000439453 MYO1GB0I1T2 1018 aa8.32□□□□□ -1.08
HPS4-206ENST00000439453 LOC110117498-PIK3R3F6TDL0 507 aa8.32□□□□□ -1.08
HPS4-206ENST00000439453 E2F3O00716 465 aa8.32□□□□□ -1.08
HPS4-206ENST00000439453 CAPN5O15484 640 aaPredicted RBP8.32□□□□□ -1.08
HPS4-206ENST00000439453 RPP40O75818 363 aaKnown RBP8.32□□□□□ -1.08
HPS4-206ENST00000439453 RPLP0P05388 317 aaKnown RBP8.32□□□□□ -1.08
HPS4-206ENST00000439453 CAPN1P07384 714 aa8.32□□□□□ -1.08
HPS4-206ENST00000439453 ABCB1P08183 1280 aaPredicted RBP8.32□□□□□ -1.08
HPS4-206ENST00000439453 OR4Q2P0C623 313 aa8.32□□□□□ -1.08
HPS4-206ENST00000439453 IL9P15248 144 aa8.32□□□□□ -1.08
HPS4-206ENST00000439453 OGNP20774 298 aaKnown RBP8.32□□□□□ -1.08
HPS4-206ENST00000439453 GRK5P34947 590 aa8.32□□□□□ -1.08
HPS4-206ENST00000439453 ARHGDIAP52565 204 aa8.32□□□□□ -1.08
HPS4-206ENST00000439453 NRG1Q02297 640 aaPredicted RBP8.32□□□□□ -1.08
HPS4-206ENST00000439453 SLC10A7Q0GE19 358 aa8.32□□□□□ -1.08
HPS4-206ENST00000439453 PROX2Q3B8N5 592 aa8.32□□□□□ -1.08
HPS4-206ENST00000439453 FAM174BQ3ZCQ3 159 aa8.32□□□□□ -1.08
HPS4-206ENST00000439453 GTDC1Q4AE62 458 aa8.32□□□□□ -1.08
HPS4-206ENST00000439453 BCL7AQ4VC05 210 aa8.32□□□□□ -1.08
HPS4-206ENST00000439453 RFTN2Q52LD8 501 aaPredicted RBP8.32□□□□□ -1.08
HPS4-206ENST00000439453 SPANXN2Q5MJ10 180 aa8.32□□□□□ -1.08
HPS4-206ENST00000439453 ANKS3Q6ZW76 656 aa8.32□□□□□ -1.08
HPS4-206ENST00000439453 CCDC71Q8IV32 467 aaPredicted RBP8.32□□□□□ -1.08
HPS4-206ENST00000439453 TTC9BQ8N6N2 239 aa8.32□□□□□ -1.08
HPS4-206ENST00000439453 C12orf76Q8N812 135 aaPredicted RBP8.32□□□□□ -1.08
HPS4-206ENST00000439453 PSD4Q8NDX1 1056 aa8.32□□□□□ -1.08
HPS4-206ENST00000439453 OR13C4Q8NGS5 318 aa8.32□□□□□ -1.08
HPS4-206ENST00000439453 OR4L1Q8NH43 312 aa8.32□□□□□ -1.08
HPS4-206ENST00000439453 BLOC1S5Q8TDH9 187 aa8.32□□□□□ -1.08
HPS4-206ENST00000439453 PIK3R3Q92569 461 aa8.32□□□□□ -1.08
HPS4-206ENST00000439453 SDHCQ99643 169 aaPredicted RBP8.32□□□□□ -1.08
HPS4-206ENST00000439453 ARPC5LQ9BPX5 153 aa8.32□□□□□ -1.08
HPS4-206ENST00000439453 RNF167Q9H6Y7 350 aa8.32□□□□□ -1.08
HPS4-206ENST00000439453 PLSCR3Q9NRY6 295 aa8.32□□□□□ -1.08
HPS4-206ENST00000439453 WDR70Q9NW82 654 aa8.32□□□□□ -1.08
HPS4-206ENST00000439453 C14orf119Q9NWQ9 140 aa8.32□□□□□ -1.08
HPS4-206ENST00000439453 HECAQ9UBI9 543 aaPredicted RBP8.32□□□□□ -1.08
HPS4-206ENST00000439453 SATB2Q9UPW6 733 aa8.32□□□□□ -1.08
HPS4-206ENST00000439453 MED16Q9Y2X0 877 aa8.32□□□□□ -1.08
HPS4-206ENST00000439453 GRIP1Q9Y3R0 1128 aa8.32□□□□□ -1.08
HPS4-206ENST00000439453 FAM220BPB1ANY3 271 aa8.31□□□□□ -1.08
HPS4-206ENST00000439453 J3KR12 359 aa8.31□□□□□ -1.08
HPS4-206ENST00000439453 SEMA3DO95025 777 aa8.31□□□□□ -1.08
HPS4-206ENST00000439453 CRYZL1O95825 349 aa8.31□□□□□ -1.08
HPS4-206ENST00000439453 HOXB6P17509 224 aaKnown RBP8.31□□□□□ -1.08
HPS4-206ENST00000439453 HOXA9P31269 272 aa8.31□□□□□ -1.08
HPS4-206ENST00000439453 HTR7P34969 479 aa8.31□□□□□ -1.08
HPS4-206ENST00000439453 MAGEA11P43364 429 aa8.31□□□□□ -1.08
HPS4-206ENST00000439453 HK3P52790 923 aa8.31□□□□□ -1.08
HPS4-206ENST00000439453 CREMQ03060 361 aa8.31□□□□□ -1.08
HPS4-206ENST00000439453 MARC1Q5VT66 337 aa8.31□□□□□ -1.08
HPS4-206ENST00000439453 KIAA1614Q5VZ46 1190 aa8.31□□□□□ -1.08
HPS4-206ENST00000439453 OR2T5Q6IEZ7 315 aa8.31□□□□□ -1.08
HPS4-206ENST00000439453 SLC46A3Q7Z3Q1 461 aa8.31□□□□□ -1.08
HPS4-206ENST00000439453 SNX20Q7Z614 316 aa8.31□□□□□ -1.08
HPS4-206ENST00000439453 C11orf74Q86VG3 221 aa8.31□□□□□ -1.08
HPS4-206ENST00000439453 OR2T29Q8NH02 315 aa8.31□□□□□ -1.08
HPS4-206ENST00000439453 HCAR2Q8TDS4 363 aa8.31□□□□□ -1.08
HPS4-206ENST00000439453 DNASE1L2Q92874 299 aa8.31□□□□□ -1.08
HPS4-206ENST00000439453 GPR21Q99679 349 aa8.31□□□□□ -1.08
HPS4-206ENST00000439453 COPS4Q9BT78 406 aa8.31□□□□□ -1.08
HPS4-206ENST00000439453 SLA2Q9H6Q3 261 aa8.31□□□□□ -1.08
HPS4-206ENST00000439453 PAQR5Q9NXK6 330 aaPredicted RBP8.31□□□□□ -1.08
HPS4-206ENST00000439453 CD274Q9NZQ7 290 aa8.31□□□□□ -1.08
HPS4-206ENST00000439453 BTBD3Q9Y2F9 522 aa8.31□□□□□ -1.08
HPS4-206ENST00000439453 AP3M1Q9Y2T2 418 aa8.31□□□□□ -1.08
HPS4-206ENST00000439453 BDP1A6H8Y1 2624 aa8.31□□□□□ -1.08
HPS4-206ENST00000439453 IRAK2O43187 625 aa8.31□□□□□ -1.08
HPS4-206ENST00000439453 IGLV3-25P01717 112 aa8.31□□□□□ -1.08
HPS4-206ENST00000439453 SLC2A4P14672 509 aa8.31□□□□□ -1.08
HPS4-206ENST00000439453 NAT1P18440 290 aa8.31□□□□□ -1.08
HPS4-206ENST00000439453 OR1D2P34982 312 aa8.31□□□□□ -1.08
HPS4-206ENST00000439453 ETV6P41212 452 aa8.31□□□□□ -1.08
HPS4-206ENST00000439453 MAGEA2P43356 314 aa8.31□□□□□ -1.08
HPS4-206ENST00000439453 SLC15A1P46059 708 aa8.31□□□□□ -1.08
HPS4-206ENST00000439453 P2RX3P56373 397 aa8.31□□□□□ -1.08
HPS4-206ENST00000439453 GPR50Q13585 617 aa8.31□□□□□ -1.08
HPS4-206ENST00000439453 STARD3Q14849 445 aa8.31□□□□□ -1.08
HPS4-206ENST00000439453 PTGR1Q14914 329 aa8.31□□□□□ -1.08
HPS4-206ENST00000439453 TYSND1Q2T9J0 566 aa8.31□□□□□ -1.08
HPS4-206ENST00000439453 SOWAHCQ53LP3 525 aaPredicted RBP8.31□□□□□ -1.08
HPS4-206ENST00000439453 PEX5LQ8IYB4 626 aa8.31□□□□□ -1.08
HPS4-206ENST00000439453 APH1BQ8WW43 257 aa8.31□□□□□ -1.08
HPS4-206ENST00000439453 TRIM63Q969Q1 353 aa8.31□□□□□ -1.08
HPS4-206ENST00000439453 TBC1D20Q96BZ9 403 aa8.31□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 51.2 ms