RNA–Protein interactions for RNA: ENST00000415083.6

SS18-203, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SS18, Length 3,414 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-203ENST00000415083 SLC12A9Q9BXP2 914 aa9.55□□□□□ -0.88
SS18-203ENST00000415083 TM9SF3Q9HD45 589 aa9.55□□□□□ -0.88
SS18-203ENST00000415083 AFF4Q9UHB7 1163 aaKnown RBP9.55□□□□□ -0.88
SS18-203ENST00000415083 CD84Q9UIB8 345 aa9.55□□□□□ -0.88
SS18-203ENST00000415083 RNF6Q9Y252 685 aa9.55□□□□□ -0.88
SS18-203ENST00000415083 YIPF1Q9Y548 306 aa9.55□□□□□ -0.88
SS18-203ENST00000415083 CHD9Q3L8U1 2897 aa9.55□□□□□ -0.88
SS18-203ENST00000415083 SPTBN5Q9NRC6 3674 aaKnown RBP9.55□□□□□ -0.88
SS18-203ENST00000415083 TBKBP1A7MCY6 615 aa9.55□□□□□ -0.88
SS18-203ENST00000415083 GFYI3L273 518 aa9.55□□□□□ -0.88
SS18-203ENST00000415083 M0R129 80 aa9.55□□□□□ -0.88
SS18-203ENST00000415083 CLIC1O00299 241 aa9.55□□□□□ -0.88
SS18-203ENST00000415083 CCNDBP1O95273 360 aa9.55□□□□□ -0.88
SS18-203ENST00000415083 NADKO95544 446 aaPredicted RBP9.55□□□□□ -0.88
SS18-203ENST00000415083 CASP9P55211 416 aa9.55□□□□□ -0.88
SS18-203ENST00000415083 TPD52P55327 224 aaPredicted RBP9.55□□□□□ -0.88
SS18-203ENST00000415083 RAB15P59190 212 aa9.55□□□□□ -0.88
SS18-203ENST00000415083 RPP38P78345 283 aaKnown RBP9.55□□□□□ -0.88
SS18-203ENST00000415083 TOP3AQ13472 1001 aaPredicted RBP9.55□□□□□ -0.88
SS18-203ENST00000415083 GTF2H3Q13889 308 aa9.55□□□□□ -0.88
SS18-203ENST00000415083 CARTPTQ16568 116 aa9.55□□□□□ -0.88
SS18-203ENST00000415083 ZNF385BQ569K4 471 aa9.55□□□□□ -0.88
SS18-203ENST00000415083 TTC29Q8NA56 475 aaPredicted RBP9.55□□□□□ -0.88
SS18-203ENST00000415083 ECHDC3Q96DC8 303 aa9.55□□□□□ -0.88
SS18-203ENST00000415083 CMTM7Q96FZ5 175 aa9.55□□□□□ -0.88
SS18-203ENST00000415083 LYSMD1Q96S90 227 aa9.55□□□□□ -0.88
SS18-203ENST00000415083 HEPHQ9BQS7 1158 aa9.55□□□□□ -0.88
SS18-203ENST00000415083 TMEM121BQ9BXQ6 578 aaPredicted RBP9.55□□□□□ -0.88
SS18-203ENST00000415083 ASPSCR1Q9BZE9 553 aa9.55□□□□□ -0.88
SS18-203ENST00000415083 ATG10Q9H0Y0 220 aa9.55□□□□□ -0.88
SS18-203ENST00000415083 PARVBQ9HBI1 364 aa9.55□□□□□ -0.88
SS18-203ENST00000415083 NMRK2Q9NPI5 230 aa9.55□□□□□ -0.88
SS18-203ENST00000415083 FKBP14Q9NWM8 211 aa9.55□□□□□ -0.88
SS18-203ENST00000415083 ARL15Q9NXU5 204 aa9.55□□□□□ -0.88
SS18-203ENST00000415083 DAPK2Q9UIK4 370 aa9.55□□□□□ -0.88
SS18-203ENST00000415083 ANGPTL3Q9Y5C1 460 aa9.55□□□□□ -0.88
SS18-203ENST00000415083 PCDHB7Q9Y5E2 793 aa9.55□□□□□ -0.88
SS18-203ENST00000415083 KIF26AQ9ULI4 1882 aaPredicted RBP9.55□□□□□ -0.88
SS18-203ENST00000415083 PABPN1LA6NDY0 278 aaKnown RBP9.54□□□□□ -0.88
SS18-203ENST00000415083 RFXANKO14593 260 aa9.54□□□□□ -0.88
SS18-203ENST00000415083 CA12O43570 354 aa9.54□□□□□ -0.88
SS18-203ENST00000415083 OLFM2O95897 454 aa9.54□□□□□ -0.88
SS18-203ENST00000415083 GABRB1P18505 474 aa9.54□□□□□ -0.88
SS18-203ENST00000415083 SPAM1P38567 509 aa9.54□□□□□ -0.88
SS18-203ENST00000415083 RGS4P49798 205 aa9.54□□□□□ -0.88
SS18-203ENST00000415083 HNRNPFP52597 415 aaKnown RBP9.54□□□□□ -0.88
SS18-203ENST00000415083 AP1S1P61966 158 aa9.54□□□□□ -0.88
SS18-203ENST00000415083 ZNF846Q147U1 533 aa9.54□□□□□ -0.88
SS18-203ENST00000415083 INAQ16352 499 aa9.54□□□□□ -0.88
SS18-203ENST00000415083 TRIM16LQ309B1 348 aa9.54□□□□□ -0.88
SS18-203ENST00000415083 COX20Q5RI15 118 aa9.54□□□□□ -0.88
SS18-203ENST00000415083 CCDC81Q6ZN84 652 aa9.54□□□□□ -0.88
SS18-203ENST00000415083 UBE2R2Q712K3 238 aaPredicted RBP9.54□□□□□ -0.88
SS18-203ENST00000415083 FKBP9P1Q75LS8 142 aa9.54□□□□□ -0.88
SS18-203ENST00000415083 PHF10Q8WUB8 498 aaKnown RBP9.54□□□□□ -0.88
SS18-203ENST00000415083 AUTS2Q8WXX7 1259 aa9.54□□□□□ -0.88
SS18-203ENST00000415083 CDK5RAP1Q96SZ6 601 aaKnown RBP9.54□□□□□ -0.88
SS18-203ENST00000415083 EPS8L2Q9H6S3 715 aa9.54□□□□□ -0.88
SS18-203ENST00000415083 NECTIN3Q9NQS3 549 aa9.54□□□□□ -0.88
SS18-203ENST00000415083 SERTM1A2A2V5 107 aa9.54□□□□□ -0.88
SS18-203ENST00000415083 FPGTO14772 594 aa9.54□□□□□ -0.88
SS18-203ENST00000415083 OPRD1P41143 372 aa9.54□□□□□ -0.88
SS18-203ENST00000415083 SMARCB1Q12824 385 aa9.54□□□□□ -0.88
SS18-203ENST00000415083 MTA1Q13330 715 aa9.54□□□□□ -0.88
SS18-203ENST00000415083 DUOXA1Q1HG43 343 aa9.54□□□□□ -0.88
SS18-203ENST00000415083 METTL2BQ6P1Q9 378 aaKnown RBP9.54□□□□□ -0.88
SS18-203ENST00000415083 LIN28BQ6ZN17 250 aaKnown RBP eCLIP9.54□□□□□ -0.884e-6■■□□□ 11.5
SS18-203ENST00000415083 CYP2U1Q7Z449 544 aa9.54□□□□□ -0.88
SS18-203ENST00000415083 CBARPQ8N350 705 aaPredicted RBP9.54□□□□□ -0.88
SS18-203ENST00000415083 TMEM132CQ8N3T6 1108 aa9.54□□□□□ -0.88
SS18-203ENST00000415083 PCSK9Q8NBP7 692 aaKnown RBP9.54□□□□□ -0.88
SS18-203ENST00000415083 PROX1Q92786 737 aa9.54□□□□□ -0.88
SS18-203ENST00000415083 CCDC138Q96M89 665 aa9.54□□□□□ -0.88
SS18-203ENST00000415083 CRLS1Q9UJA2 301 aa9.54□□□□□ -0.88
SS18-203ENST00000415083 SH2B3Q9UQQ2 575 aa9.54□□□□□ -0.88
SS18-203ENST00000415083 VCANP13611 3396 aa9.54□□□□□ -0.88
SS18-203ENST00000415083 NUP210Q8TEM1 1887 aaPredicted RBP9.54□□□□□ -0.88
SS18-203ENST00000415083 A8MU76 341 aa9.54□□□□□ -0.88
SS18-203ENST00000415083 E7EQ34 232 aa9.54□□□□□ -0.88
SS18-203ENST00000415083 NPC1O15118 1278 aa9.54□□□□□ -0.88
SS18-203ENST00000415083 PFDN6O15212 129 aa9.54□□□□□ -0.88
SS18-203ENST00000415083 RFPL2O75678 378 aa9.54□□□□□ -0.88
SS18-203ENST00000415083 DNAJB5O75953 348 aa9.54□□□□□ -0.88
SS18-203ENST00000415083 COL6A1P12109 1028 aa9.54□□□□□ -0.88
SS18-203ENST00000415083 ITGALP20701 1170 aa9.54□□□□□ -0.88
SS18-203ENST00000415083 TMED10P49755 219 aaKnown RBP9.54□□□□□ -0.88
SS18-203ENST00000415083 ITGA1P56199 1179 aa9.54□□□□□ -0.88
SS18-203ENST00000415083 CXCR4P61073 352 aa9.54□□□□□ -0.88
SS18-203ENST00000415083 SELENBP1Q13228 472 aa9.54□□□□□ -0.88
SS18-203ENST00000415083 MPEG1Q2M385 716 aa9.54□□□□□ -0.88
SS18-203ENST00000415083 UBE2UQ5VVX9 321 aa9.54□□□□□ -0.88
SS18-203ENST00000415083 WDR53Q7Z5U6 358 aaPredicted RBP9.54□□□□□ -0.88
SS18-203ENST00000415083 NPAS4Q8IUM7 802 aa9.54□□□□□ -0.88
SS18-203ENST00000415083 BBS7Q8IWZ6 715 aa9.54□□□□□ -0.88
SS18-203ENST00000415083 KIAA1958Q8N8K9 716 aa9.54□□□□□ -0.88
SS18-203ENST00000415083 FAM83FQ8NEG4 500 aaPredicted RBP9.54□□□□□ -0.88
SS18-203ENST00000415083 LGALS12Q96DT0 336 aa9.54□□□□□ -0.88
SS18-203ENST00000415083 NRBF2Q96F24 287 aa9.54□□□□□ -0.88
SS18-203ENST00000415083 TRMT2BQ96GJ1 504 aaKnown RBP9.54□□□□□ -0.88
SS18-203ENST00000415083 DACH2Q96NX9 599 aa9.54□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms